mRNA_H-elongata_contig6108.13656.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig6108.13656.1 vs. uniprot
Match: D8LC96_ECTSI (Peroxisomal membrane protein PEX16 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC96_ECTSI) HSP 1 Score: 445 bits (1144), Expect = 1.350e-144 Identity = 263/506 (51.98%), Postives = 330/506 (65.22%), Query Frame = 2
Query: 74 EHQHSQHVAGDGWSYAKFVRRNPIGARSLESLLQYAGFFAPTRWADRDLAIESGYAAASLASLMHSLILLNDRLGDGLGPDGPD------------QIHSQSGTPGSTI--EHCSKPRTSSSTTFAERMRVILAMITNVQVVLEKLSRQHGGERRRRQAIIYVEALKAVSRLLLLAFTGEMMLAGGVYVPG-KPRSPQCRDRAKRATCREVNLAERSTNAQHFLE--ADSLPST-LRSPEIYTGRRSGVRFVIPPRASFVWRGRGRSSR-GCVGRQAISGEA---SYSQRKPKGPCTACQTSSDSFTELHETEQESWTPETNGRVDGGDTCYEENPQQRQTRLSSRYDGGGKSEPGFSQAWLMAGEVSHILRPLVYSYSCGSTGERSWRPWLVSLGMDVFAYACTARAGG--GKVASLLPVRSGVDGQGVPILPFLDSEEAAELKRRKLLWFLYLMRSPAFQLLVEPLSRGAAGVFEGVPLLGGMVTYAVNMLLYVQRHHFYISAS 1519
+ Q + +GW YA FVR NP AR++E+LL+Y+GFFAP R+ADRDL+IESGYA +SLA+L H IL++ + G GLG G D Q+H+ PGS+I + ++ R SS+T A+RMRV LAMI NVQ+V+EKL+ QHGG RRR+QAI+Y+E LKA++RLLLLA T EM++ GG YV G R+P +R K REV+L N E D PS PE+YTG+RSGV+ ++PPRAS VW GRGRS+R G V R A + + S+R G +SS SF G +GG + + S + +++ G QAWLMAGEV HILRPL YSY C +TGERSWRPWL+SLGMD A+ACTARAGG G +A L P+ GVP+LP+LD E+AAEL+RRK+LWFLYLMRSPAF+LL EP+SRGAAGVFEGVP+LGGM YA+NMLLYVQRHHFY SAS
Sbjct: 3 QQQRDPRASEEGWCYANFVRHNPTAARTVETLLRYSGFFAPARFADRDLSIESGYALSSLAALAHDQILIHGQ-GGGLGRGGQDGGAANDDGLDGGQVHALGIAPGSSIRLDPKNRERPSSTTVVAQRMRVALAMIANVQIVVEKLAAQHGGPRRRQQAIVYLETLKALARLLLLACTREMVVGGGSYVSGGNRRTPPLGNRNKAGAWREVDLNGARLNQAQSSEFAVDRPPSPPCPPPEVYTGKRSGVKLIVPPRASVVWSGRGRSNRSGGVSRLAATASSPSCGSSRRSADGVFQNDSSSSSSFR---------------GCANGGQGIGTGGSMEAASDESCVWRQRREAQGG--QAWLMAGEVIHILRPLAYSYGCAATGERSWRPWLISLGMDAAAFACTARAGGSSGAMALLTPIGE-AGSSGVPVLPYLDEEQAAELRRRKMLWFLYLMRSPAFELLAEPVSRGAAGVFEGVPILGGMAGYALNMLLYVQRHHFYTSAS 489
BLAST of mRNA_H-elongata_contig6108.13656.1 vs. uniprot
Match: A0A835Z8Q5_9STRA (Peroxisomal membrane protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Q5_9STRA) HSP 1 Score: 224 bits (571), Expect = 1.740e-59 Identity = 162/470 (34.47%), Postives = 226/470 (48.09%), Query Frame = 2
Query: 116 YAKFVRRNPIGARSLESLLQYAGFFAPTRWADRDLAIESGYAAASLASLMHSLILLNDRLGDGLGPDGPDQIHSQSGTPGSTIEHCSKPRTSSSTTFAERMRVILAMITNVQVVLEKLSRQHGGERRRRQAIIYVEALKAVSRLLLLAFTGEMMLAGGVYVPGKP--RSPQCRDRAKRATCREVNLA--ERSTNAQHFLEADSLPSTLRSPEIYTGRRSGVRFVIPPRAS----------FVWRGRGRSSRGCVGRQAISGEASYSQRKPKGPCTACQTSSDSFTELHETEQESWTPETNGRVDGGDTCYEENPQQRQTRLSSRYDGGGKSEPGFSQAWLMAGEVSHILRPLVYSYSCGSTGERSWRPWLVSLGMDVFAYACTARAGGGKVASLLPVRSGVDGQGVPILPFLDSEEAAELKRRKLLWFLYLMRSPAFQLLVEPLSRGAAGVFEGVPLLGGMVTYAVNMLL 1483
Y+ FV+ NP A LES+L+Y+GF AP ++ +R+L +E+GYAA+SLA L+H DG+ + P Q H Q T G +R L ++ +++VV EK++ GG RRRQ I +E KAV RL +LA T EM+LAGG + PG P R R V L +R+ N +P +Y G+R G ++ +P RA G + GC Q S++ C Q ++ G DG EE+ R G P +AWL+ GE H +RP YS +CG GE +W PWL+S+ +DV + ACTARA + VR G G G + P E+ AEL+RRK+ W LYL+R+PAF+LL+ P + GAAG F GVP+LGG+ +YA+ MLL
Sbjct: 10 YSAFVKANPGTANLLESVLRYSGFLAPAQFGERELLVEAGYAASSLAGLLH----------DGI--NAPQQQHQQRSTGGHEEG------------VVATLRTALVVLAHIEVVAEKVAAASGGAVRRRQLITAIEVAKAVMRLTILALTREMLLAGGHHAPGAPPLRGQTIAGRVGSRVLSTVGLGLEDRAENGTGH-------GPPPAPVMYQGKRCGRKYALPARAQARHGSAPGLRLGANGSAPALNGCSSAQ----NGSHTDMYGAASCCGLQHAACG----------------GGHGDGAGWMAEEDEDGELERHRRWLHAGRAPAPPPPKAWLLLGEGLHAIRPAAYSAACGRLGEAAWAPWLLSMSVDVASRACTARA--------VEVRGG-RGNGGALTP----EQRAELRRRKVQWVLYLLRTPAFELLLGPAATGAAGAFGGVPVLGGLASYALQMLL 415
BLAST of mRNA_H-elongata_contig6108.13656.1 vs. uniprot
Match: A0A7S2SSB6_9STRA (Peroxisomal membrane protein PEX16 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSB6_9STRA) HSP 1 Score: 120 bits (301), Expect = 1.900e-25 Identity = 127/468 (27.14%), Postives = 195/468 (41.67%), Query Frame = 2
Query: 113 SYAKFVRRNPIGARSLESLLQYAGFFAPTRWADRDLAIESGYAAASLASLMHSLILLNDRLGDGLGPDGPDQIHSQSGTPGSTIEHCSKPRTSSSTTFAERMRVILAMITNVQVVLEKLSRQHGGERRRRQAIIYVEALKAVSRLLLLAFTGEMMLAGGVYVPGKPRSPQCRDRAKRATCREVNLAERSTNAQHFLEA-DSLPSTLRSPEIYTGRRSGVRFVIPPRASFVWRGRGRSSRGCVGRQAISGEASYSQRKPKGPCTACQTSSDSFTELHETEQESWTPETNGRVDGGDTCYEEN--PQQRQTRLSSRYDGGGKSEPGFSQAWLMAGEVSHILRPLVYSYSCGSTGERSWRPWLVSLGMDVFAYACTARAGGGKVASLLPVRSGVDGQGVPILPFLDSEEAAELKRRKLLWFLYLMRSPAFQLLVEPLSRGAAGVFEGVPLLGGMVTYAVNMLLYVQRHHFY 1507
SYA FVRR + LE+ + A ++ P+R++ + E GYA ++L L+H IL S S +P ++ CS +S + LA+ +N+QV+LE+LSR+ GE R+ II +E LK + RL+L+ +++ GG Y+P P + A AT E A A D L +T+R +Y GRR G + A G + +G+ + T S DS + E P G + G D E P R + + + W+MA E + RPLV R WR +V+L +D+ + C RA +R G L E E +RRKL++ YL+R+P + L P++ F +P+ GG+ Y + + Y+QRHHFY
Sbjct: 16 SYAAFVRRREPWVKMLETAIANASYYFPSRFSSTEELSELGYAVSNLLGLVHDTILA-----------------SPSASP-LELQGCS-----ASEQITLGAEIALAVTSNIQVLLEQLSRRVQGEEGRQTIIIRIETLKFLLRLVLIFRRQTLLVDGGNYMPPLRAGPN-QTAALDATSSEAXXXXXEERAAAEANAVDDLLTTVRQRHVYVGRRCGKSMHLGDVA------------GAQCEMSTAGDNGLA-------ATPVWLSEDS-------DGEDTLP---GTISGRDGQAEAPIVPPHAPHRTNEEAE-------SLRRRWIMASEALYFSRPLV-QVLLTYRARRRWRALVVALLIDILSLWCWFRAE--------KLRRGA----------LSLEVCEERRRRKLMYAYYLLRAPLWDSLSRPVADTVHSSFASIPVAGGIANYLYSFVDYLQRHHFY 404
BLAST of mRNA_H-elongata_contig6108.13656.1 vs. uniprot
Match: A0A1W0AC00_9STRA (Peroxisomal membrane protein PEX16 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0AC00_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 1.740e-16 Identity = 55/143 (38.46%), Postives = 79/143 (55.24%), Query Frame = 2
Query: 1094 MAGEVSHILRPLVYSYSCGSTGERSWRPWLVSLGMDVFAYACTARAGGGKVASLLPVRSGVDGQGVPILPFLDSEEAAELKRRKLLWFLYLMRSPAFQLLVEPLSRGAAGVFEGVPLLGGMVTYAV-NMLLYVQRHHFYISAS 1519
+AGEV HILRP++Y+ C E+SW P+L S ++ AC++ G + ++ L V D A EL+RRK+ LYL+R+P F +PL+ A + VPLLG ++ +A+ N L Y QR HFY SAS
Sbjct: 192 LAGEVLHILRPVIYAILCQRKTEQSWIPFLASFSTEILGIACSSA--GLEHSNKLSV---------------DPLVAEELRRRKMCLLLYLLRNPFFSSATQPLADNVANATKPVPLLGRLLQFAIDNGLHYYQRRHFYTSAS 317
BLAST of mRNA_H-elongata_contig6108.13656.1 vs. uniprot
Match: W7TST8_9STRA (Peroxisomal membrane protein PEX16 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TST8_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 1.970e-16 Identity = 133/538 (24.72%), Postives = 208/538 (38.66%), Query Frame = 2
Query: 113 SYAKFVRRNPIGARSLESLLQYAGFFAPTRWADR---DLAIESGYAAASLASLMHSLILLNDRLGDGLGPDGPDQIHSQSGTPGSTIEHCSKPRTSSSTTFAERMRVILAMITNVQVVLEKLSRQHGGERRRRQAIIYVEALKAVSRLLLLAFTGE-------MMLAGGVYVPGKPRSPQCRDRAKRATCREVNLAERSTNAQHFLEADS---------LPSTLRSP---------EIYTGRRSGVRFVIPPRASFVWRGRGRSSRGCVGRQAISGEASY-SQRKPKGPCTACQ----------TSSDSFTELHETEQES--WTPETNGRVDGGDTCYEENPQQRQTRLSSRYDGGGKSEPGFSQAWLMAGEVSHILRPLVY-------------------------SYSCGSTGERSWRPWLVSLG--MDVFAYACTARA-GGGKVASLLPVRSGVDGQGVPILPFLDSEEAAELKRRKLLWFLYLMRSPAFQLLVEPLSRGAAGVFEGVPLLGGMVTYAVNMLLYVQRHHFYISAS 1519
SY FVR + + R LE L++ FF P+R+ + ++ E AA+++ +L++ L+LL R TP E +R+ + L +I++ +V+ EK+S G+ ++++EALK + RL L++ + ++L GG +P R + + +L +++ A +E D LP + P E GRR+G +F F ++ +G+ Y S R G T C +S+ S TE + S T + G G + EE P+ Q R L+AGE+ HILRPLV S G + LV L MD+ +Y CT A GG A L EL+RRK LW LYL+R+P F+ L P++R G +PL+GG+ +Y+ L+Y+QRH S S
Sbjct: 6 SYISFVRNHALFVRPLEGLIRTVTFFLPSRFYENGNGEIVSEGALAASNVMTLVNDLVLLGPR-----------------NTPLLPKEE-------------DRLGLTLLLISHTEVLAEKIS-MRLGDGTDHLVVLWLEALKVLLRLRLVSLQQQHGGNANVVLLDGGRAIPTFHRPVESARPSSSTPGETSSLGVKNSGATSGVEEDQEDEEVLLRVLPEEVARPKRAECREGQEWKRGRRTGRKFRY-----FS--------------ESYNGDDDYGSNRHLIGDLTRCNARWTLSSPSPSSASSSTESGASTSPSAPTTGDCEGVAVGIEWTREERPEVAQARARL----------------LLAGEILHILRPLVLASLRWALARRRRVKGRAVAAPPMGRSLRRGPLHSAAPESLLVLLPALMDLVSYQCTTGALNGGDNA-------------------LKQSCEDELRRRKNLWLLYLLRTPVFEGLTHPVTRAVDGSLVRLPLVGGLASYSYQALIYIQRHFTLTSGS 458
BLAST of mRNA_H-elongata_contig6108.13656.1 vs. uniprot
Match: A0A4D8XZS9_SALSN (Peroxisomal membrane protein PEX16 n=7 Tax=Salvia TaxID=21880 RepID=A0A4D8XZS9_SALSN) HSP 1 Score: 87.0 bits (214), Expect = 1.640e-14 Identity = 54/153 (35.29%), Postives = 77/153 (50.33%), Query Frame = 2
Query: 1064 SEPGFSQAWLMAGEVSHILRPLVYSYSCGSTGERSWRPWLVSLGMDVFAYACTARAGGGKVASLLPV-RSGVDGQGVPILPFLDSEEAAELKRRKLLWFLYLMRSPAFQLLVEPLSRGAAGVFEGVPLLGGMVTYAVNMLLYVQRHHFYISAS 1519
SE G + GEV +ILRPL+Y G RSW PWL SLG+D+ G G ++ + + + +D + L + E ELKRRKLLW LYLMR P F GA + E +P++G + + +L+ Q + Y+S S
Sbjct: 234 SEKGMPGGLFLTGEVMYILRPLIYVLLVRKYGARSWFPWLTSLGVDL--------VGSGVISFVTTLWHNSIDFR-------LSNNEKNELKRRKLLWALYLMRDPFFTKHTRQRLDGAQKLLEPIPIVGLLSEKVIELLVGAQTRYTYMSGS 371
BLAST of mRNA_H-elongata_contig6108.13656.1 vs. uniprot
Match: UPI00077282A9 (peroxisome biogenesis protein 16 isoform X2 n=1 Tax=Ricinus communis TaxID=3988 RepID=UPI00077282A9) HSP 1 Score: 84.0 bits (206), Expect = 2.060e-14 Identity = 56/152 (36.84%), Postives = 71/152 (46.71%), Query Frame = 2
Query: 1064 SEPGFSQAWLMAGEVSHILRPLVYSYSCGSTGERSWRPWLVSLGMDVFAYACTARAGGGKVASLLPVRSGVDGQGVPILPFLDSEEAAELKRRKLLWFLYLMRSPAFQLLVEPLSRGAAGVFEGVPLLGGMVTYAVNMLLYVQRHHFYISAS 1519
SE GF A + GEV I RPL+Y G RSW PW +SL +D + +S DG+G L DSE+ ELKRRKLLW LYLMR P F V E VP++G + V ++ Q + Y+S S
Sbjct: 91 SERGFHGALFVMGEVLFITRPLIYVLFIRKYGIRSWIPWFLSLAVDFIGIGLLTQV----------TKSRHDGKGQQ-LSLTDSEKD-ELKRRKLLWALYLMRDPFFNKYTRQRLESTEKVLEPVPIIGLITAKIVELVTGAQTRYTYMSGS 230
BLAST of mRNA_H-elongata_contig6108.13656.1 vs. uniprot
Match: A0A2P2KGJ9_RHIMU (Peroxisomal membrane protein PEX16 n=4 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2KGJ9_RHIMU) HSP 1 Score: 86.3 bits (212), Expect = 2.890e-14 Identity = 57/152 (37.50%), Postives = 71/152 (46.71%), Query Frame = 2
Query: 1064 SEPGFSQAWLMAGEVSHILRPLVYSYSCGSTGERSWRPWLVSLGMDVFAYACTARAGGGKVASLLPVRSGVDGQGVPILPFLDSEEAAELKRRKLLWFLYLMRSPAFQLLVEPLSRGAAGVFEGVPLLGGMVTYAVNMLLYVQRHHFYISAS 1519
SE G A + GE I RPL+Y G RSW PW +SLG+D G G +A L+ R G GQ L E ELKRRKLLW LYLMR P F + E VP++G + V +L+ Q + Y+S S
Sbjct: 230 SEKGIHGALFVMGEFLFITRPLIYVLFIRRYGIRSWIPWFLSLGVDFI--------GTGILAQLIKSRYGGKGQKF----HLTVSEQDELKRRKLLWALYLMRDPFFSKYTRKRLESTQKLLEPVPIVGFLTEKIVELLIGAQSRYTYMSGS 369
BLAST of mRNA_H-elongata_contig6108.13656.1 vs. uniprot
Match: A0A6N2AK06_SOLCI (Peroxisomal membrane protein PEX16 (Fragment) n=7 Tax=Solanum TaxID=4107 RepID=A0A6N2AK06_SOLCI) HSP 1 Score: 85.5 bits (210), Expect = 4.650e-14 Identity = 53/152 (34.87%), Postives = 77/152 (50.66%), Query Frame = 2
Query: 1064 SEPGFSQAWLMAGEVSHILRPLVYSYSCGSTGERSWRPWLVSLGMDVFAYACTARAGGGKVASLLPVRSGVDGQGVPILPFLDSEEAAELKRRKLLWFLYLMRSPAFQLLVEPLSRGAAGVFEGVPLLGGMVTYAVNMLLYVQRHHFYISAS 1519
S+ G + + GE+ I+RPLVY G RSW PW VSL +D+ + + +L+ SG + Q L F DSE+ ELKRR++LW LYLMR P F + + +P+LG + + +L+ VQ + YIS S
Sbjct: 220 SDKGVPGGFFVTGEILFIIRPLVYVLLMRKYGTRSWFPWCVSLAVDLIGNSILS-------VTLMSQHSGKNQQ----LQFSDSEKD-ELKRRRMLWALYLMRDPLFTKYTRQRLESTQRLVQPIPILGFVAEKIIEILIGVQTRYTYISGS 359
BLAST of mRNA_H-elongata_contig6108.13656.1 vs. uniprot
Match: A0A1R3I7X7_COCAP (Peroxisomal membrane protein PEX16 n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3I7X7_COCAP) HSP 1 Score: 85.1 bits (209), Expect = 5.690e-14 Identity = 54/152 (35.53%), Postives = 77/152 (50.66%), Query Frame = 2
Query: 1064 SEPGFSQAWLMAGEVSHILRPLVYSYSCGSTGERSWRPWLVSLGMDVFAYACTARAGGGKVASLLPVRSGVDGQGVPILPFLDSEEAAELKRRKLLWFLYLMRSPAFQLLVEPLSRGAAGVFEGVPLLGGMVTYAVNMLLYVQRHHFYISAS 1519
SE GF+ A + GEV I RPL+Y G RSW+PW +SL +D G G ++ ++ +SG G+ L + E E+KRRKLLW LYLMR P F+ + E VPL+G + V +++ Q + Y+S S
Sbjct: 212 SEKGFNGALFVLGEVLFITRPLIYVLFIRRYGLRSWKPWFISLAVDFI--------GVGFISHVM--QSGKGGREQRFN--LSASEKDEVKRRKLLWALYLMREPFFEKYTRRKLESTEKILEPVPLIGTLAGKIVELVVGAQSRYTYMSGS 351 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6108.13656.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig6108.13656.1 >prot_H-elongata_contig6108.13656.1 ID=prot_H-elongata_contig6108.13656.1|Name=mRNA_H-elongata_contig6108.13656.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=484bp MEHQHSQHVAGDGWSYAKFVRRNPIGARSLESLLQYAGFFAPTRWADRDLback to top mRNA from alignment at H-elongata_contig6108:6348..10204- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig6108.13656.1 ID=mRNA_H-elongata_contig6108.13656.1|Name=mRNA_H-elongata_contig6108.13656.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3857bp|location=Sequence derived from alignment at H-elongata_contig6108:6348..10204- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig6108:6348..10204- >mRNA_H-elongata_contig6108.13656.1 ID=mRNA_H-elongata_contig6108.13656.1|Name=mRNA_H-elongata_contig6108.13656.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2904bp|location=Sequence derived from alignment at H-elongata_contig6108:6348..10204- (Himanthalia elongata Himel1 dioecious)back to top |