mRNA_H-elongata_contig61014.13646.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61014.13646.1
Unique NamemRNA_H-elongata_contig61014.13646.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig61014.13646.1 vs. uniprot
Match: D7FSQ2_ECTSI (RNA_pol_Rbc25 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSQ2_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 1.020e-25
Identity = 49/62 (79.03%), Postives = 54/62 (87.10%), Query Frame = 1
Query:   19 TTQVAPSKFSGHSLEVLTSQIETKFVDRVIVNVGLCLGLHSYESIGDPYVYPSDGSAHYKAR 204
            T  VAPSKFSG +L+VLT+QIE KF DRVI NVGLC+ LHSYESIGDPYVYPSDG+AHYK R
Sbjct:   27 TIWVAPSKFSGDALDVLTAQIEAKFADRVIANVGLCICLHSYESIGDPYVYPSDGAAHYKVR 88          
BLAST of mRNA_H-elongata_contig61014.13646.1 vs. uniprot
Match: A0A835YK61_9STRA (RNA polymerase III subunit Rpc25-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK61_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 4.750e-14
Identity = 33/67 (49.25%), Postives = 48/67 (71.64%), Query Frame = 1
Query:    1 IAALPSTTQVAPSKFSGHSLEVLTSQIETKFVDRVIVNVGLCLGLHSYESIGDPYVYPSDGSAHYKA 201
            +A +    +V P  F   +L+VLT  ++ K+ ++VI+NVGL + LHS+ES+GD  VYPSDGSAHY+A
Sbjct:    4 LATVRDNLKVIPESFDRPTLDVLTEVVDMKYSNKVIINVGLAICLHSFESVGDALVYPSDGSAHYEA 70          
BLAST of mRNA_H-elongata_contig61014.13646.1 vs. uniprot
Match: A0A6V1SWR7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1SWR7_HETAK)

HSP 1 Score: 72.0 bits (175), Expect = 7.490e-14
Identity = 30/67 (44.78%), Postives = 48/67 (71.64%), Query Frame = 1
Query:    1 IAALPSTTQVAPSKFSGHSLEVLTSQIETKFVDRVIVNVGLCLGLHSYESIGDPYVYPSDGSAHYKA 201
            +A +  + ++ PS F  + ++ LT +I+ K+ ++VI++VGLC+ L  +E IGD Y+YP DGSAHYKA
Sbjct:    4 LAVVKDSVKIHPSAFDKNQIQALTEEIDHKYANKVILDVGLCICLFDFEHIGDAYIYPLDGSAHYKA 70          
BLAST of mRNA_H-elongata_contig61014.13646.1 vs. uniprot
Match: A0A4D9CXH6_9STRA (RNA_pol_Rbc25 domain-containing protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CXH6_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 2.700e-11
Identity = 26/66 (39.39%), Postives = 49/66 (74.24%), Query Frame = 1
Query:    1 IAALPSTTQVAPSKFSGHSLEVLTSQIETKFVDRVIVNVGLCLGLHSYESIGDPYVYPSDGSAHYK 198
            +A +  T +V P+ F+ + +EVLT +++ K+ +R++++VGL + L+ +  IGD Y+YPSDG+AH++
Sbjct:    4 LAVIRDTIKVPPASFNRNQIEVLTEEVDRKYANRIVMDVGLGVCLYDFVDIGDAYLYPSDGAAHHR 69          
BLAST of mRNA_H-elongata_contig61014.13646.1 vs. uniprot
Match: A0A7S3H250_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H250_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 3.940e-11
Identity = 28/55 (50.91%), Postives = 41/55 (74.55%), Query Frame = 1
Query:   25 QVAPSKFSGHSLEVLTSQIETKFVDRVIVNVGLCLGLHSYESIGDPYVYPSDGSA 189
            + AP +F   + EVL  QIE K+ +RV+++VGLC+  + + SIGDPY+YPS+GSA
Sbjct:    5 KTAPDQFGRDAAEVLKEQIEIKYANRVLLHVGLCITFYDFISIGDPYLYPSEGSA 59          
BLAST of mRNA_H-elongata_contig61014.13646.1 vs. uniprot
Match: A0A7S2SVH5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVH5_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 2.420e-10
Identity = 27/65 (41.54%), Postives = 44/65 (67.69%), Query Frame = 1
Query:    1 IAALPSTTQVAPSKFSGHSLEVLTSQIETKFVDRVIVNVGLCLGLHSYESIGDPYVYPSDGSAHY 195
            ++ L    +VAP KF    +EVL+ +++ K+ ++VI N+GLC+  H ++SI +  VYPSDG AH+
Sbjct:    4 LSVLRDVVRVAPDKFDRDLVEVLSEELDKKYANKVIPNIGLCICTHDFKSIEEAKVYPSDGGAHH 68          
BLAST of mRNA_H-elongata_contig61014.13646.1 vs. uniprot
Match: A0A2P4YAB6_9STRA (DNA-directed RNA polymerase III subunit RPC8 (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YAB6_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.330e-9
Identity = 25/55 (45.45%), Postives = 39/55 (70.91%), Query Frame = 1
Query:   28 VAPSKFSGHSLEVLTSQIETKFVDRVIVNVGLCLGLHSYESIGDPYVYPSDGSAH 192
            VAP  F     +VL  +I+ K+ ++VI +VGLC+ L+ + SIGD +V+PSDG++H
Sbjct:   13 VAPELFDADYTQVLVEEIDRKYANKVIADVGLCITLYDFVSIGDAFVHPSDGTSH 67          
BLAST of mRNA_H-elongata_contig61014.13646.1 vs. uniprot
Match: A0A1V9Z282_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z282_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.460e-9
Identity = 26/56 (46.43%), Postives = 40/56 (71.43%), Query Frame = 1
Query:   25 QVAPSKFSGHSLEVLTSQIETKFVDRVIVNVGLCLGLHSYESIGDPYVYPSDGSAH 192
            Q+AP  FS     VLT +I+ K+ ++VI +VGLC+ L+ +  IGD Y++PSDG++H
Sbjct:   12 QIAPELFSTDYSSVLTEEIDRKYANKVIADVGLCITLYDFIEIGDAYIHPSDGTSH 67          
BLAST of mRNA_H-elongata_contig61014.13646.1 vs. uniprot
Match: A0A2R5GFT2_9STRA (DNA-directed RNA polymerase III subunit rpc8 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GFT2_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.850e-9
Identity = 26/61 (42.62%), Postives = 41/61 (67.21%), Query Frame = 1
Query:   10 LPSTTQVAPSKFSGHSLEVLTSQIETKFVDRVIVNVGLCLGLHSYESIGDPYVYPSDGSAH 192
            L  T +V PS+F    L VLT  +++K+ ++V+ NVGLC+ L  + +IGD Y++P DG+ H
Sbjct:    7 LRDTLRVDPSQFGREKLSVLTRLVDSKYANKVVPNVGLCVCLKEFVTIGDAYIFPGDGACH 67          
BLAST of mRNA_H-elongata_contig61014.13646.1 vs. uniprot
Match: A0A067CHA1_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CHA1_SAPPC)

HSP 1 Score: 60.8 bits (146), Expect = 2.150e-9
Identity = 25/56 (44.64%), Postives = 39/56 (69.64%), Query Frame = 1
Query:   25 QVAPSKFSGHSLEVLTSQIETKFVDRVIVNVGLCLGLHSYESIGDPYVYPSDGSAH 192
            Q+AP  F      VLT +I+ K+ ++VI +VGLC+ L+ +  IGD Y++PSDG++H
Sbjct:   12 QIAPELFGTDYSSVLTEEIDRKYANKVIADVGLCITLYDFIEIGDAYIHPSDGTSH 67          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61014.13646.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSQ2_ECTSI1.020e-2579.03RNA_pol_Rbc25 domain-containing protein n=1 Tax=Ec... [more]
A0A835YK61_9STRA4.750e-1449.25RNA polymerase III subunit Rpc25-domain-containing... [more]
A0A6V1SWR7_HETAK7.490e-1444.78Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A4D9CXH6_9STRA2.700e-1139.39RNA_pol_Rbc25 domain-containing protein n=4 Tax=Mo... [more]
A0A7S3H250_9STRA3.940e-1150.91Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S2SVH5_9STRA2.420e-1041.54Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A2P4YAB6_9STRA1.330e-945.45DNA-directed RNA polymerase III subunit RPC8 (Frag... [more]
A0A1V9Z282_9STRA1.460e-946.43Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A2R5GFT2_9STRA1.850e-942.62DNA-directed RNA polymerase III subunit rpc8 n=1 T... [more]
A0A067CHA1_SAPPC2.150e-944.64Uncharacterized protein n=3 Tax=Saprolegniaceae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61014contigH-elongata_contig61014:914..1144 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.9
Seed ortholog evalue8.5e-21
Seed eggNOG ortholog2880.D7FSQ2
Preferred namePOLR3H
KEGG rclassRC00050,RC00087,RC00088,RC00099,RC00116,RC00649,RC01715,RC01734,RC02273,RC02795
KEGG koko:K00121,ko:K03022
KEGG ReactionR00435,R00441,R00442,R00443,R00623,R00754,R02124,R04880,R05233,R05234,R06917,R06927,R06983,R07105,R08281,R08306,R08310
KEGG Pathwayko00010,ko00071,ko00230,ko00240,ko00350,ko00625,ko00626,ko00680,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01200,ko01220,ko03020,ko04623,ko05169,ko05204,map00010,map00071,map00230,map00240,map00350,map00625,map00626,map00680,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01200,map01220,map03020,map04623,map05169,map05204
KEGG ModuleM00181
GOsGO:0000228,GO:0000428,GO:0000785,GO:0000790,GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005666,GO:0005694,GO:0006139,GO:0006351,GO:0006352,GO:0006383,GO:0006384,GO:0006399,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009304,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0030880,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042797,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0046483,GO:0055029,GO:0061695,GO:0070013,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.transcription initiation from RNA polymerase III promoter
EggNOG OGsCOG1095@1,KOG3297@2759
EC1.1.1.1,1.1.1.284
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRNA polymerase Rpb7, N-terminal
Ec32 orthologEc-03_002970.1
Exons1
Model size231
Cds size231
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930985.1937172-CDS-H-elongata_contig61014:913..11441622930985.1937172-CDS-H-elongata_contig61014:913..1144Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61014 914..1144 -
1691679651.1577702-CDS-H-elongata_contig61014:913..11441691679651.1577702-CDS-H-elongata_contig61014:913..1144Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61014 914..1144 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61014.13646.1prot_H-elongata_contig61014.13646.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61014 914..1144 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61014.13646.1

>prot_H-elongata_contig61014.13646.1 ID=prot_H-elongata_contig61014.13646.1|Name=mRNA_H-elongata_contig61014.13646.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
IAALPSTTQVAPSKFSGHSLEVLTSQIETKFVDRVIVNVGLCLGLHSYES
IGDPYVYPSDGSAHYKARNSWLGCPR*
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mRNA from alignment at H-elongata_contig61014:914..1144-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61014.13646.1 ID=mRNA_H-elongata_contig61014.13646.1|Name=mRNA_H-elongata_contig61014.13646.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=231bp|location=Sequence derived from alignment at H-elongata_contig61014:914..1144- (Himanthalia elongata Himel1 dioecious)
ATCGCGGCACTGCCATCGACGACACAGGTGGCCCCCAGCAAGTTCAGCGG CCATTCCCTGGAAGTCTTGACATCGCAAATAGAGACCAAGTTTGTCGACA GAGTGATCGTGAACGTAGGCCTTTGTCTGGGATTGCACAGCTACGAGAGC ATCGGTGACCCGTACGTGTACCCCTCCGATGGTTCCGCCCACTACAAGGC GAGAAATTCGTGGCTCGGTTGCCCTAGATGA
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Coding sequence (CDS) from alignment at H-elongata_contig61014:914..1144-

>mRNA_H-elongata_contig61014.13646.1 ID=mRNA_H-elongata_contig61014.13646.1|Name=mRNA_H-elongata_contig61014.13646.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig61014:914..1144- (Himanthalia elongata Himel1 dioecious)
ATCGCGGCACTGCCATCGACGACACAGGTGGCCCCCAGCAAGTTCAGCGG
CCATTCCCTGGAAGTCTTGACATCGCAAATAGAGACCAAGTTTGTCGACA
GAGTGATCGTGAACGTAGGCCTTTGTCTGGGATTGCACAGCTACGAGAGC
ATCGGTGACCCGTACGTGTACCCCTCCGATGGTTCCGCCCACTACAAGGC
GAGAAATTCGTGGCTCGGTTGCCCTAGATGAATCGCGGCACTGCCATCGA
CGACACAGGTGGCCCCCAGCAAGTTCAGCGGCCATTCCCTGGAAGTCTTG
ACATCGCAAATAGAGACCAAGTTTGTCGACAGAGTGATCGTGAACGTAGG
CCTTTGTCTGGGATTGCACAGCTACGAGAGCATCGGTGACCCGTACGTGT
ACCCCTCCGATGGTTCCGCCCACTACAAGGCGAGAAATTCGTGGCTCGGT
TGCCCTAGATGA
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