prot_H-elongata_contig61014.13646.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig61014.13646.1
Unique Nameprot_H-elongata_contig61014.13646.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length77
Homology
BLAST of mRNA_H-elongata_contig61014.13646.1 vs. uniprot
Match: D7FSQ2_ECTSI (RNA_pol_Rbc25 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSQ2_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 1.020e-25
Identity = 49/62 (79.03%), Postives = 54/62 (87.10%), Query Frame = 0
Query:    7 TTQVAPSKFSGHSLEVLTSQIETKFVDRVIVNVGLCLGLHSYESIGDPYVYPSDGSAHYKAR 68
            T  VAPSKFSG +L+VLT+QIE KF DRVI NVGLC+ LHSYESIGDPYVYPSDG+AHYK R
Sbjct:   27 TIWVAPSKFSGDALDVLTAQIEAKFADRVIANVGLCICLHSYESIGDPYVYPSDGAAHYKVR 88          
BLAST of mRNA_H-elongata_contig61014.13646.1 vs. uniprot
Match: A0A835YK61_9STRA (RNA polymerase III subunit Rpc25-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK61_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 4.750e-14
Identity = 33/67 (49.25%), Postives = 48/67 (71.64%), Query Frame = 0
Query:    1 IAALPSTTQVAPSKFSGHSLEVLTSQIETKFVDRVIVNVGLCLGLHSYESIGDPYVYPSDGSAHYKA 67
            +A +    +V P  F   +L+VLT  ++ K+ ++VI+NVGL + LHS+ES+GD  VYPSDGSAHY+A
Sbjct:    4 LATVRDNLKVIPESFDRPTLDVLTEVVDMKYSNKVIINVGLAICLHSFESVGDALVYPSDGSAHYEA 70          
BLAST of mRNA_H-elongata_contig61014.13646.1 vs. uniprot
Match: A0A6V1SWR7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1SWR7_HETAK)

HSP 1 Score: 72.0 bits (175), Expect = 7.490e-14
Identity = 30/67 (44.78%), Postives = 48/67 (71.64%), Query Frame = 0
Query:    1 IAALPSTTQVAPSKFSGHSLEVLTSQIETKFVDRVIVNVGLCLGLHSYESIGDPYVYPSDGSAHYKA 67
            +A +  + ++ PS F  + ++ LT +I+ K+ ++VI++VGLC+ L  +E IGD Y+YP DGSAHYKA
Sbjct:    4 LAVVKDSVKIHPSAFDKNQIQALTEEIDHKYANKVILDVGLCICLFDFEHIGDAYIYPLDGSAHYKA 70          
BLAST of mRNA_H-elongata_contig61014.13646.1 vs. uniprot
Match: A0A4D9CXH6_9STRA (RNA_pol_Rbc25 domain-containing protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CXH6_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 2.700e-11
Identity = 26/66 (39.39%), Postives = 49/66 (74.24%), Query Frame = 0
Query:    1 IAALPSTTQVAPSKFSGHSLEVLTSQIETKFVDRVIVNVGLCLGLHSYESIGDPYVYPSDGSAHYK 66
            +A +  T +V P+ F+ + +EVLT +++ K+ +R++++VGL + L+ +  IGD Y+YPSDG+AH++
Sbjct:    4 LAVIRDTIKVPPASFNRNQIEVLTEEVDRKYANRIVMDVGLGVCLYDFVDIGDAYLYPSDGAAHHR 69          
BLAST of mRNA_H-elongata_contig61014.13646.1 vs. uniprot
Match: A0A7S3H250_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H250_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 3.940e-11
Identity = 28/55 (50.91%), Postives = 41/55 (74.55%), Query Frame = 0
Query:    9 QVAPSKFSGHSLEVLTSQIETKFVDRVIVNVGLCLGLHSYESIGDPYVYPSDGSA 63
            + AP +F   + EVL  QIE K+ +RV+++VGLC+  + + SIGDPY+YPS+GSA
Sbjct:    5 KTAPDQFGRDAAEVLKEQIEIKYANRVLLHVGLCITFYDFISIGDPYLYPSEGSA 59          
BLAST of mRNA_H-elongata_contig61014.13646.1 vs. uniprot
Match: A0A7S2SVH5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVH5_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 2.420e-10
Identity = 27/65 (41.54%), Postives = 44/65 (67.69%), Query Frame = 0
Query:    1 IAALPSTTQVAPSKFSGHSLEVLTSQIETKFVDRVIVNVGLCLGLHSYESIGDPYVYPSDGSAHY 65
            ++ L    +VAP KF    +EVL+ +++ K+ ++VI N+GLC+  H ++SI +  VYPSDG AH+
Sbjct:    4 LSVLRDVVRVAPDKFDRDLVEVLSEELDKKYANKVIPNIGLCICTHDFKSIEEAKVYPSDGGAHH 68          
BLAST of mRNA_H-elongata_contig61014.13646.1 vs. uniprot
Match: A0A2P4YAB6_9STRA (DNA-directed RNA polymerase III subunit RPC8 (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YAB6_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.330e-9
Identity = 25/55 (45.45%), Postives = 39/55 (70.91%), Query Frame = 0
Query:   10 VAPSKFSGHSLEVLTSQIETKFVDRVIVNVGLCLGLHSYESIGDPYVYPSDGSAH 64
            VAP  F     +VL  +I+ K+ ++VI +VGLC+ L+ + SIGD +V+PSDG++H
Sbjct:   13 VAPELFDADYTQVLVEEIDRKYANKVIADVGLCITLYDFVSIGDAFVHPSDGTSH 67          
BLAST of mRNA_H-elongata_contig61014.13646.1 vs. uniprot
Match: A0A1V9Z282_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z282_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.460e-9
Identity = 26/56 (46.43%), Postives = 40/56 (71.43%), Query Frame = 0
Query:    9 QVAPSKFSGHSLEVLTSQIETKFVDRVIVNVGLCLGLHSYESIGDPYVYPSDGSAH 64
            Q+AP  FS     VLT +I+ K+ ++VI +VGLC+ L+ +  IGD Y++PSDG++H
Sbjct:   12 QIAPELFSTDYSSVLTEEIDRKYANKVIADVGLCITLYDFIEIGDAYIHPSDGTSH 67          
BLAST of mRNA_H-elongata_contig61014.13646.1 vs. uniprot
Match: A0A2R5GFT2_9STRA (DNA-directed RNA polymerase III subunit rpc8 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GFT2_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.850e-9
Identity = 26/61 (42.62%), Postives = 41/61 (67.21%), Query Frame = 0
Query:    4 LPSTTQVAPSKFSGHSLEVLTSQIETKFVDRVIVNVGLCLGLHSYESIGDPYVYPSDGSAH 64
            L  T +V PS+F    L VLT  +++K+ ++V+ NVGLC+ L  + +IGD Y++P DG+ H
Sbjct:    7 LRDTLRVDPSQFGREKLSVLTRLVDSKYANKVVPNVGLCVCLKEFVTIGDAYIFPGDGACH 67          
BLAST of mRNA_H-elongata_contig61014.13646.1 vs. uniprot
Match: A0A067CHA1_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CHA1_SAPPC)

HSP 1 Score: 60.8 bits (146), Expect = 2.150e-9
Identity = 25/56 (44.64%), Postives = 39/56 (69.64%), Query Frame = 0
Query:    9 QVAPSKFSGHSLEVLTSQIETKFVDRVIVNVGLCLGLHSYESIGDPYVYPSDGSAH 64
            Q+AP  F      VLT +I+ K+ ++VI +VGLC+ L+ +  IGD Y++PSDG++H
Sbjct:   12 QIAPELFGTDYSSVLTEEIDRKYANKVIADVGLCITLYDFIEIGDAYIHPSDGTSH 67          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61014.13646.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSQ2_ECTSI1.020e-2579.03RNA_pol_Rbc25 domain-containing protein n=1 Tax=Ec... [more]
A0A835YK61_9STRA4.750e-1449.25RNA polymerase III subunit Rpc25-domain-containing... [more]
A0A6V1SWR7_HETAK7.490e-1444.78Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A4D9CXH6_9STRA2.700e-1139.39RNA_pol_Rbc25 domain-containing protein n=4 Tax=Mo... [more]
A0A7S3H250_9STRA3.940e-1150.91Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S2SVH5_9STRA2.420e-1041.54Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A2P4YAB6_9STRA1.330e-945.45DNA-directed RNA polymerase III subunit RPC8 (Frag... [more]
A0A1V9Z282_9STRA1.460e-946.43Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A2R5GFT2_9STRA1.850e-942.62DNA-directed RNA polymerase III subunit rpc8 n=1 T... [more]
A0A067CHA1_SAPPC2.150e-944.64Uncharacterized protein n=3 Tax=Saprolegniaceae Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036898RNA polymerase Rpb7-like, N-terminal domain superfamilyGENE3D3.30.1490.120coord: 1..71
e-value: 8.9E-15
score: 56.4
IPR036898RNA polymerase Rpb7-like, N-terminal domain superfamilySUPERFAMILY88798N-terminal, heterodimerisation domain of RBP7 (RpoE)coord: 4..67
IPR005576RNA polymerase Rpb7-like , N-terminalPFAMPF03876SHS2_Rpb7-Ncoord: 9..68
e-value: 2.0E-8
score: 34.5
NoneNo IPR availablePANTHERPTHR12709DNA-DIRECTED RNA POLYMERASE II, IIIcoord: 3..66
NoneNo IPR availablePANTHERPTHR12709:SF1DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC8coord: 3..66

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61014contigH-elongata_contig61014:914..1144 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61014.13646.1mRNA_H-elongata_contig61014.13646.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig61014 914..1144 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig61014.13646.1 ID=prot_H-elongata_contig61014.13646.1|Name=mRNA_H-elongata_contig61014.13646.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
IAALPSTTQVAPSKFSGHSLEVLTSQIETKFVDRVIVNVGLCLGLHSYES
IGDPYVYPSDGSAHYKARNSWLGCPR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036898RNA_pol_Rpb7-like_N_sf
IPR005576Rpb7-like_N