mRNA_H-elongata_contig6096.13638.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig6096.13638.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE) HSP 1 Score: 237 bits (604), Expect = 1.360e-70 Identity = 140/388 (36.08%), Postives = 216/388 (55.67%), Query Frame = 1
Query: 1 ENYLPTPATAPIRMLLTTAVVKDGELRHFDATQAFLRADIDEYMYIEIPDEYQECPGPVRLLNKAIYGLVQAGRCWNNKV*DDISAIGFKQAKADPCVFRKVVDGEGEVVVIVHVDGILAHAKAKATMDIFATELGQKVQLKDIRDDMY*MGCHITRNRKARELQIDQHLYVESMVEKFDIPATPGVKTLPKADKPRNPEEKEEIKKLPYREAVGALM*TTMMRRLDTANAVRAVPRFCENPGPVHKKVVIKIMSYLLHTRDRRITYG-GQGCGLCMVAYTDSDYGACLNTRRLVSRTVLMLVKGMTSWYSTIQELTASRTSEAEYVALLEEIKEILNFR*VQEFMEPSTRAGGVNMFKDNEEATKLATNKHSSRRTKHIDAKHHMVR 1161
E Y PT A + +R+L A ++ LRHFD QAF+++D+DE +++ +P+ G + LNK++YGL QA R W++ + + +GF Q AD CVFR + +G V ++VHVD I + + + D F +L V +K++ D + GC R+ A L+I Q Y E + +F + + LP K ++ EE+ P+RE +G+LM R D ANAVRAV R+C +P +H + + I+ Y++ T D IT+ G GL M + D+DY + RR VS ++M G SW+S Q+ T+EAEYV+L + +KE+L R V FM P + +F+DN+ A +LA N S+ +KHID +HH +R
Sbjct: 10 ETYAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERC-DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEI-PLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIR 395
BLAST of mRNA_H-elongata_contig6096.13638.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE) HSP 1 Score: 237 bits (604), Expect = 8.310e-69 Identity = 140/388 (36.08%), Postives = 216/388 (55.67%), Query Frame = 1
Query: 1 ENYLPTPATAPIRMLLTTAVVKDGELRHFDATQAFLRADIDEYMYIEIPDEYQECPGPVRLLNKAIYGLVQAGRCWNNKV*DDISAIGFKQAKADPCVFRKVVDGEGEVVVIVHVDGILAHAKAKATMDIFATELGQKVQLKDIRDDMY*MGCHITRNRKARELQIDQHLYVESMVEKFDIPATPGVKTLPKADKPRNPEEKEEIKKLPYREAVGALM*TTMMRRLDTANAVRAVPRFCENPGPVHKKVVIKIMSYLLHTRDRRITYG-GQGCGLCMVAYTDSDYGACLNTRRLVSRTVLMLVKGMTSWYSTIQELTASRTSEAEYVALLEEIKEILNFR*VQEFMEPSTRAGGVNMFKDNEEATKLATNKHSSRRTKHIDAKHHMVR 1161
E Y PT A + +R+L A ++ LRHFD QAF+++D+DE +++ +P+ G + LNK++YGL QA R W++ + + +GF Q AD CVFR + +G V ++VHVD I + + + D F +L V +K++ D + GC R+ A L+I Q Y E + +F + + LP K ++ EE+ P+RE +G+LM R D ANAVRAV R+C +P +H + + I+ Y++ T D IT+ G GL M + D+DY + RR VS ++M G SW+S Q+ T+EAEYV+L + +KE+L R V FM P + +F+DN+ A +LA N S+ +KHID +HH +R
Sbjct: 184 ETYAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERC-DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEI-PLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIR 569
BLAST of mRNA_H-elongata_contig6096.13638.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE) HSP 1 Score: 237 bits (604), Expect = 4.250e-66 Identity = 140/388 (36.08%), Postives = 216/388 (55.67%), Query Frame = 1
Query: 1 ENYLPTPATAPIRMLLTTAVVKDGELRHFDATQAFLRADIDEYMYIEIPDEYQECPGPVRLLNKAIYGLVQAGRCWNNKV*DDISAIGFKQAKADPCVFRKVVDGEGEVVVIVHVDGILAHAKAKATMDIFATELGQKVQLKDIRDDMY*MGCHITRNRKARELQIDQHLYVESMVEKFDIPATPGVKTLPKADKPRNPEEKEEIKKLPYREAVGALM*TTMMRRLDTANAVRAVPRFCENPGPVHKKVVIKIMSYLLHTRDRRITYG-GQGCGLCMVAYTDSDYGACLNTRRLVSRTVLMLVKGMTSWYSTIQELTASRTSEAEYVALLEEIKEILNFR*VQEFMEPSTRAGGVNMFKDNEEATKLATNKHSSRRTKHIDAKHHMVR 1161
E Y PT A + +R+L A ++ LRHFD QAF+++D+DE +++ +P+ G + LNK++YGL QA R W++ + + +GF Q AD CVFR + +G V ++VHVD I + + + D F +L V +K++ D + GC R+ A L+I Q Y E + +F + + LP K ++ EE+ P+RE +G+LM R D ANAVRAV R+C +P +H + + I+ Y++ T D IT+ G GL M + D+DY + RR VS ++M G SW+S Q+ T+EAEYV+L + +KE+L R V FM P + +F+DN+ A +LA N S+ +KHID +HH +R
Sbjct: 705 ETYAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERC-DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEI-PLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIR 1090
BLAST of mRNA_H-elongata_contig6096.13638.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE) HSP 1 Score: 216 bits (549), Expect = 1.950e-62 Identity = 131/388 (33.76%), Postives = 214/388 (55.15%), Query Frame = 1
Query: 1 ENYLPTPATAPIRMLLTTAVVKDGELRHFDATQAFLRADIDEYMYIEIPDEYQECPGPVRLLNKAIYGLVQAGRCWNNKV*DDISAIGFKQAKADPCVFRKVVDGEGEVVVIVHVDGILAHAKAKATMDIFATELGQKVQLKDIRDDMY*MGCHITRNRKARELQIDQHLYVESMVEKFDIPATPGVKTLPKADKPRNPEEKEEIKKLPYREAVGALM*TTMMRRLDTANAVRAVPRFCENPGPVHKKVVIKIMSYLLHTRDRRITYG-GQGCGLCMVAYTDSDYGACLNTRRLVSRTVLMLVKGMTSWYSTIQELTASRTSEAEYVALLEEIKEILNFR*VQEFMEPSTRAGGVNMFKDNEEATKLATNKHSSRRTKHIDAKHHMVR 1161
E + PT + + +R+L A ++ +L HFD QAF+++++DE +++ +P G + L K++YGL QA R W++ + + +GF Q AD CVFR + +G ++++VHVD I A + K D F +L + V +K++ + + C R+ + L+I Q + E + ++ I V LP + K + +E E +P+RE VG+LM R D ANAVRAV R+C +P VH K + I+ Y+ T IT+ G G+ M + D+DY + RR VS ++M G +W+S Q+ T+EAEYVA+ + +KE+L R V FM P + +F+DN+ A ++A N ++ +KHID +HH +R
Sbjct: 10 ELFAPTVSVSSVRLLAALACEQNLDLCHFDIQQAFVQSELDEDVFMRLPQGCGRLSGLIVKLCKSLYGLKQASRHWHSHLTRCLLLLGFLQCLADACVFRLMEEGRVIMIIVVHVDDIFAVGQ-KERCDKFGEDLNEMVPVKNLGELRWYSACFYERDVERGLLRISQQRFAEELAAEYGIEWGRSV-PLPVSVKLTDFDENEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIR 395
BLAST of mRNA_H-elongata_contig6096.13638.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE) HSP 1 Score: 222 bits (565), Expect = 2.350e-62 Identity = 131/388 (33.76%), Postives = 213/388 (54.90%), Query Frame = 1
Query: 1 ENYLPTPATAPIRMLLTTAVVKDGELRHFDATQAFLRADIDEYMYIEIPDEYQECPGPVRLLNKAIYGLVQAGRCWNNKV*DDISAIGFKQAKADPCVFRKVVDGEGEVVVIVHVDGILAHAKAKATMDIFATELGQKVQLKDIRDDMY*MGCHITRNRKARELQIDQHLYVESMVEKFDIPATPGVKTLPKADKPRNPEEKEEIKKLPYREAVGALM*TTMMRRLDTANAVRAVPRFCENPGPVHKKVVIKIMSYLLHTRDRRITYGGQGC-GLCMVAYTDSDYGACLNTRRLVSRTVLMLVKGMTSWYSTIQELTASRTSEAEYVALLEEIKEILNFR*VQEFMEPSTRAGGVNMFKDNEEATKLATNKHSSRRTKHIDAKHHMVR 1161
E + PT A IR+++ A + EL H D QAF ++ +D + +++P G + LNK++YGL QA R + ++ D+ IGF+Q+ +DPCV R ++ E ++ +HVD IL +A K ++ LG + K++ + + +GC +R+R+A ++I Q Y+ S++E+F+I T + P D R+ E EE +P+RE VG LM R +T+NAVR V R P K KI+SYL T + Y + + Y D+D+ + RR VS ++++ + SW+S Q+ + TSEAEY+A+ + +KE L + + + PS + +++F+DNE A LA N SS R+KHID +HH +R
Sbjct: 296 ETFSPTANAASIRLVVALACKYNLELLHLDIEQAFFQSKLDHEVLMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLLRIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDIL-YAGTKRLAEVIVEALGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIRSVLERFNICRTSSIPASPANDS-RSVMEDEEAGDVPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVLVAGCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEALFVNGMLQLLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLR 681
BLAST of mRNA_H-elongata_contig6096.13638.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE) HSP 1 Score: 223 bits (568), Expect = 4.170e-61 Identity = 143/389 (36.76%), Postives = 211/389 (54.24%), Query Frame = 1
Query: 13 PTPATAPIRMLLTTAVVKDGELRHFDATQAFLRADIDEYMYIEIPDEYQECPGPVRLLNKAIYGLVQAGRCWNNKV*DDISAIGFKQAKADPCVFRKVVDGEGEVVVIVHVDGILAHAKAKATMDIFATELGQKVQLKDIRDDMY*MGCHITRNRKARELQIDQHLYVESMVEKFD------IPATPGVKTLPKADKPRNPEEKEEIKKLPYREAVGALM*TTMMRRLDTANAVRAVPRFCENPGPVHKKVVIKIMSYLLHTRDRRITYGGQGCGLCMVAYTDSDYGACLNTRRLVSRTVLMLVKGMTSWYSTIQELTASRTSEAEYVALLEEIKEILNFR*VQEFMEPSTRAGGVNMFKDNEEATKLATNKHSSRRTKHIDAKHHMVR 1161
P P++A I+++L A K L H+D QA+ A +DE +++++P + + +AIYGL Q+GR W D + GF+Q KADPCVFRK+VD ++++++VD IL + ++ A+ L +K K++ + + GC I R+ +A L+I Q Y++SMVE+FD IPATPG PK E EE + P REA+G++M + R D + AVRAV R P H + KI+ YL TRD ITY +G GL + Y D+ Y A RR VS + + S S Q + + ++EAEY+A E +KE L R V F+ P T + + +DN+ A L N SS RTKHID ++H +R
Sbjct: 824 PCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLAS-LNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASY-ADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIR 1202
BLAST of mRNA_H-elongata_contig6096.13638.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 223 bits (568), Expect = 4.840e-61 Identity = 143/389 (36.76%), Postives = 211/389 (54.24%), Query Frame = 1
Query: 13 PTPATAPIRMLLTTAVVKDGELRHFDATQAFLRADIDEYMYIEIPDEYQECPGPVRLLNKAIYGLVQAGRCWNNKV*DDISAIGFKQAKADPCVFRKVVDGEGEVVVIVHVDGILAHAKAKATMDIFATELGQKVQLKDIRDDMY*MGCHITRNRKARELQIDQHLYVESMVEKFD------IPATPGVKTLPKADKPRNPEEKEEIKKLPYREAVGALM*TTMMRRLDTANAVRAVPRFCENPGPVHKKVVIKIMSYLLHTRDRRITYGGQGCGLCMVAYTDSDYGACLNTRRLVSRTVLMLVKGMTSWYSTIQELTASRTSEAEYVALLEEIKEILNFR*VQEFMEPSTRAGGVNMFKDNEEATKLATNKHSSRRTKHIDAKHHMVR 1161
P P++A I+++L A K L H+D QA+ A +DE +++++P + + +AIYGL Q+GR W D + GF+Q KADPCVFRK+VD ++++++VD IL + ++ A+ L +K K++ + + GC I R+ +A L+I Q Y++SMVE+FD IPATPG PK E EE + P REA+G++M + R D + AVRAV R P H + KI+ YL TRD ITY +G GL + Y D+ Y A RR VS + + S S Q + + ++EAEY+A E +KE L R V F+ P T + + +DN+ A L N SS RTKHID ++H +R
Sbjct: 1203 PCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLAS-LNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASY-ADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIR 1581
BLAST of mRNA_H-elongata_contig6096.13638.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 223 bits (568), Expect = 4.890e-61 Identity = 143/389 (36.76%), Postives = 211/389 (54.24%), Query Frame = 1
Query: 13 PTPATAPIRMLLTTAVVKDGELRHFDATQAFLRADIDEYMYIEIPDEYQECPGPVRLLNKAIYGLVQAGRCWNNKV*DDISAIGFKQAKADPCVFRKVVDGEGEVVVIVHVDGILAHAKAKATMDIFATELGQKVQLKDIRDDMY*MGCHITRNRKARELQIDQHLYVESMVEKFD------IPATPGVKTLPKADKPRNPEEKEEIKKLPYREAVGALM*TTMMRRLDTANAVRAVPRFCENPGPVHKKVVIKIMSYLLHTRDRRITYGGQGCGLCMVAYTDSDYGACLNTRRLVSRTVLMLVKGMTSWYSTIQELTASRTSEAEYVALLEEIKEILNFR*VQEFMEPSTRAGGVNMFKDNEEATKLATNKHSSRRTKHIDAKHHMVR 1161
P P++A I+++L A K L H+D QA+ A +DE +++++P + + +AIYGL Q+GR W D + GF+Q KADPCVFRK+VD ++++++VD IL + ++ A+ L +K K++ + + GC I R+ +A L+I Q Y++SMVE+FD IPATPG PK E EE + P REA+G++M + R D + AVRAV R P H + KI+ YL TRD ITY +G GL + Y D+ Y A RR VS + + S S Q + + ++EAEY+A E +KE L R V F+ P T + + +DN+ A L N SS RTKHID ++H +R
Sbjct: 1223 PCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDEDCEELLAS-LNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASY-ADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIR 1601
BLAST of mRNA_H-elongata_contig6096.13638.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 223 bits (568), Expect = 4.950e-61 Identity = 143/389 (36.76%), Postives = 211/389 (54.24%), Query Frame = 1
Query: 13 PTPATAPIRMLLTTAVVKDGELRHFDATQAFLRADIDEYMYIEIPDEYQECPGPVRLLNKAIYGLVQAGRCWNNKV*DDISAIGFKQAKADPCVFRKVVDGEGEVVVIVHVDGILAHAKAKATMDIFATELGQKVQLKDIRDDMY*MGCHITRNRKARELQIDQHLYVESMVEKFD------IPATPGVKTLPKADKPRNPEEKEEIKKLPYREAVGALM*TTMMRRLDTANAVRAVPRFCENPGPVHKKVVIKIMSYLLHTRDRRITYGGQGCGLCMVAYTDSDYGACLNTRRLVSRTVLMLVKGMTSWYSTIQELTASRTSEAEYVALLEEIKEILNFR*VQEFMEPSTRAGGVNMFKDNEEATKLATNKHSSRRTKHIDAKHHMVR 1161
P P++A I+++L A K L H+D QA+ A +DE +++++P + + +AIYGL Q+GR W D + GF+Q KADPCVFRK+VD ++++++VD IL + ++ A+ L +K K++ + + GC I R+ +A L+I Q Y++SMVE+FD IPATPG PK E EE + P REA+G++M + R D + AVRAV R P H + KI+ YL TRD ITY +G GL + Y D+ Y A RR VS + + S S Q + + ++EAEY+A E +KE L R V F+ P T + + +DN+ A L N SS RTKHID ++H +R
Sbjct: 1366 PCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLAS-LNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASY-ADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIR 1744
BLAST of mRNA_H-elongata_contig6096.13638.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE) HSP 1 Score: 221 bits (563), Expect = 6.990e-61 Identity = 129/388 (33.25%), Postives = 215/388 (55.41%), Query Frame = 1
Query: 1 ENYLPTPATAPIRMLLTTAVVKDGELRHFDATQAFLRADIDEYMYIEIPDEYQECPGPVRLLNKAIYGLVQAGRCWNNKV*DDISAIGFKQAKADPCVFRKVVDGEGEVVVIVHVDGILAHAKAKATMDIFATELGQKVQLKDIRDDMY*MGCHITRNRKARELQIDQHLYVESMVEKFDIPATPGVKTLPKADKPRNPEEKEEIKKLPYREAVGALM*TTMMRRLDTANAVRAVPRFCENPGPVHKKVVIKIMSYLLHTRDRRITYG-GQGCGLCMVAYTDSDYGACLNTRRLVSRTVLMLVKGMTSWYSTIQELTASRTSEAEYVALLEEIKEILNFR*VQEFMEPSTRAGGVNMFKDNEEATKLATNKHSSRRTKHIDAKHHMVR 1161
E + PT A R+++ A + EL H+D QAF+++++D +++++P G V LNK++YGL QA R + ++ ++ IGF+Q+ +DPCV R ++ E +V +HVD IL +A K+ ++ LG + K++ + + +GC R+R+A +++ Q Y+ S++E+F++ T + P D R+ E E +P+RE VG+LM R D +NAVRAV R P H K KI++YLL T + + + Y D+D+ + N RR VS ++++ W S Q+ + TSEAEY+A+ + +KE L + +F+ PS + +++ +DNE A LA N SS R+KHID +HH +R
Sbjct: 531 ETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDIL-YAGTKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPASPTNDY-RSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLR 916 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6096.13638.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
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The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig6096.13638.1 >prot_H-elongata_contig6096.13638.1 ID=prot_H-elongata_contig6096.13638.1|Name=mRNA_H-elongata_contig6096.13638.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp MMRRLDTANAVRAVPRFCENPGPVHKKVVIKIMSYLLHTRDRRITYGGQGback to top mRNA from alignment at H-elongata_contig6096:4892..6070+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig6096.13638.1 ID=mRNA_H-elongata_contig6096.13638.1|Name=mRNA_H-elongata_contig6096.13638.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1179bp|location=Sequence derived from alignment at H-elongata_contig6096:4892..6070+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig6096:4892..6070+ >mRNA_H-elongata_contig6096.13638.1 ID=mRNA_H-elongata_contig6096.13638.1|Name=mRNA_H-elongata_contig6096.13638.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=714bp|location=Sequence derived from alignment at H-elongata_contig6096:4892..6070+ (Himanthalia elongata Himel1 dioecious)back to top |