mRNA_H-elongata_contig6096.13638.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6096.13638.1
Unique NamemRNA_H-elongata_contig6096.13638.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig6096.13638.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 237 bits (604), Expect = 1.360e-70
Identity = 140/388 (36.08%), Postives = 216/388 (55.67%), Query Frame = 1
Query:    1 ENYLPTPATAPIRMLLTTAVVKDGELRHFDATQAFLRADIDEYMYIEIPDEYQECPGPVRLLNKAIYGLVQAGRCWNNKV*DDISAIGFKQAKADPCVFRKVVDGEGEVVVIVHVDGILAHAKAKATMDIFATELGQKVQLKDIRDDMY*MGCHITRNRKARELQIDQHLYVESMVEKFDIPATPGVKTLPKADKPRNPEEKEEIKKLPYREAVGALM*TTMMRRLDTANAVRAVPRFCENPGPVHKKVVIKIMSYLLHTRDRRITYG-GQGCGLCMVAYTDSDYGACLNTRRLVSRTVLMLVKGMTSWYSTIQELTASRTSEAEYVALLEEIKEILNFR*VQEFMEPSTRAGGVNMFKDNEEATKLATNKHSSRRTKHIDAKHHMVR 1161
            E Y PT A + +R+L   A  ++  LRHFD  QAF+++D+DE +++ +P+      G +  LNK++YGL QA R W++ +   +  +GF Q  AD CVFR + +G   V ++VHVD I +  + +   D F  +L   V +K++ D  +  GC   R+  A  L+I Q  Y E +  +F +     +  LP   K    ++ EE+   P+RE +G+LM      R D ANAVRAV R+C +P  +H +  + I+ Y++ T D  IT+  G   GL M  + D+DY +    RR VS  ++M   G  SW+S  Q+     T+EAEYV+L + +KE+L  R V  FM P      + +F+DN+ A +LA N  S+  +KHID +HH +R
Sbjct:   10 ETYAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERC-DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEI-PLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIR 395          
BLAST of mRNA_H-elongata_contig6096.13638.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 237 bits (604), Expect = 8.310e-69
Identity = 140/388 (36.08%), Postives = 216/388 (55.67%), Query Frame = 1
Query:    1 ENYLPTPATAPIRMLLTTAVVKDGELRHFDATQAFLRADIDEYMYIEIPDEYQECPGPVRLLNKAIYGLVQAGRCWNNKV*DDISAIGFKQAKADPCVFRKVVDGEGEVVVIVHVDGILAHAKAKATMDIFATELGQKVQLKDIRDDMY*MGCHITRNRKARELQIDQHLYVESMVEKFDIPATPGVKTLPKADKPRNPEEKEEIKKLPYREAVGALM*TTMMRRLDTANAVRAVPRFCENPGPVHKKVVIKIMSYLLHTRDRRITYG-GQGCGLCMVAYTDSDYGACLNTRRLVSRTVLMLVKGMTSWYSTIQELTASRTSEAEYVALLEEIKEILNFR*VQEFMEPSTRAGGVNMFKDNEEATKLATNKHSSRRTKHIDAKHHMVR 1161
            E Y PT A + +R+L   A  ++  LRHFD  QAF+++D+DE +++ +P+      G +  LNK++YGL QA R W++ +   +  +GF Q  AD CVFR + +G   V ++VHVD I +  + +   D F  +L   V +K++ D  +  GC   R+  A  L+I Q  Y E +  +F +     +  LP   K    ++ EE+   P+RE +G+LM      R D ANAVRAV R+C +P  +H +  + I+ Y++ T D  IT+  G   GL M  + D+DY +    RR VS  ++M   G  SW+S  Q+     T+EAEYV+L + +KE+L  R V  FM P      + +F+DN+ A +LA N  S+  +KHID +HH +R
Sbjct:  184 ETYAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERC-DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEI-PLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIR 569          
BLAST of mRNA_H-elongata_contig6096.13638.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE)

HSP 1 Score: 237 bits (604), Expect = 4.250e-66
Identity = 140/388 (36.08%), Postives = 216/388 (55.67%), Query Frame = 1
Query:    1 ENYLPTPATAPIRMLLTTAVVKDGELRHFDATQAFLRADIDEYMYIEIPDEYQECPGPVRLLNKAIYGLVQAGRCWNNKV*DDISAIGFKQAKADPCVFRKVVDGEGEVVVIVHVDGILAHAKAKATMDIFATELGQKVQLKDIRDDMY*MGCHITRNRKARELQIDQHLYVESMVEKFDIPATPGVKTLPKADKPRNPEEKEEIKKLPYREAVGALM*TTMMRRLDTANAVRAVPRFCENPGPVHKKVVIKIMSYLLHTRDRRITYG-GQGCGLCMVAYTDSDYGACLNTRRLVSRTVLMLVKGMTSWYSTIQELTASRTSEAEYVALLEEIKEILNFR*VQEFMEPSTRAGGVNMFKDNEEATKLATNKHSSRRTKHIDAKHHMVR 1161
            E Y PT A + +R+L   A  ++  LRHFD  QAF+++D+DE +++ +P+      G +  LNK++YGL QA R W++ +   +  +GF Q  AD CVFR + +G   V ++VHVD I +  + +   D F  +L   V +K++ D  +  GC   R+  A  L+I Q  Y E +  +F +     +  LP   K    ++ EE+   P+RE +G+LM      R D ANAVRAV R+C +P  +H +  + I+ Y++ T D  IT+  G   GL M  + D+DY +    RR VS  ++M   G  SW+S  Q+     T+EAEYV+L + +KE+L  R V  FM P      + +F+DN+ A +LA N  S+  +KHID +HH +R
Sbjct:  705 ETYAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERC-DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEI-PLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIR 1090          
BLAST of mRNA_H-elongata_contig6096.13638.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE)

HSP 1 Score: 216 bits (549), Expect = 1.950e-62
Identity = 131/388 (33.76%), Postives = 214/388 (55.15%), Query Frame = 1
Query:    1 ENYLPTPATAPIRMLLTTAVVKDGELRHFDATQAFLRADIDEYMYIEIPDEYQECPGPVRLLNKAIYGLVQAGRCWNNKV*DDISAIGFKQAKADPCVFRKVVDGEGEVVVIVHVDGILAHAKAKATMDIFATELGQKVQLKDIRDDMY*MGCHITRNRKARELQIDQHLYVESMVEKFDIPATPGVKTLPKADKPRNPEEKEEIKKLPYREAVGALM*TTMMRRLDTANAVRAVPRFCENPGPVHKKVVIKIMSYLLHTRDRRITYG-GQGCGLCMVAYTDSDYGACLNTRRLVSRTVLMLVKGMTSWYSTIQELTASRTSEAEYVALLEEIKEILNFR*VQEFMEPSTRAGGVNMFKDNEEATKLATNKHSSRRTKHIDAKHHMVR 1161
            E + PT + + +R+L   A  ++ +L HFD  QAF+++++DE +++ +P       G +  L K++YGL QA R W++ +   +  +GF Q  AD CVFR + +G   ++++VHVD I A  + K   D F  +L + V +K++ +  +   C   R+ +   L+I Q  + E +  ++ I     V  LP + K  + +E E    +P+RE VG+LM      R D ANAVRAV R+C +P  VH K  + I+ Y+  T    IT+  G   G+ M  + D+DY +    RR VS  ++M   G  +W+S  Q+     T+EAEYVA+ + +KE+L  R V  FM P      + +F+DN+ A ++A N  ++  +KHID +HH +R
Sbjct:   10 ELFAPTVSVSSVRLLAALACEQNLDLCHFDIQQAFVQSELDEDVFMRLPQGCGRLSGLIVKLCKSLYGLKQASRHWHSHLTRCLLLLGFLQCLADACVFRLMEEGRVIMIIVVHVDDIFAVGQ-KERCDKFGEDLNEMVPVKNLGELRWYSACFYERDVERGLLRISQQRFAEELAAEYGIEWGRSV-PLPVSVKLTDFDENEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIR 395          
BLAST of mRNA_H-elongata_contig6096.13638.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 222 bits (565), Expect = 2.350e-62
Identity = 131/388 (33.76%), Postives = 213/388 (54.90%), Query Frame = 1
Query:    1 ENYLPTPATAPIRMLLTTAVVKDGELRHFDATQAFLRADIDEYMYIEIPDEYQECPGPVRLLNKAIYGLVQAGRCWNNKV*DDISAIGFKQAKADPCVFRKVVDGEGEVVVIVHVDGILAHAKAKATMDIFATELGQKVQLKDIRDDMY*MGCHITRNRKARELQIDQHLYVESMVEKFDIPATPGVKTLPKADKPRNPEEKEEIKKLPYREAVGALM*TTMMRRLDTANAVRAVPRFCENPGPVHKKVVIKIMSYLLHTRDRRITYGGQGC-GLCMVAYTDSDYGACLNTRRLVSRTVLMLVKGMTSWYSTIQELTASRTSEAEYVALLEEIKEILNFR*VQEFMEPSTRAGGVNMFKDNEEATKLATNKHSSRRTKHIDAKHHMVR 1161
            E + PT   A IR+++  A   + EL H D  QAF ++ +D  + +++P       G +  LNK++YGL QA R +  ++  D+  IGF+Q+ +DPCV R ++  E   ++ +HVD IL +A  K   ++    LG  +  K++ +  + +GC  +R+R+A  ++I Q  Y+ S++E+F+I  T  +   P  D  R+  E EE   +P+RE VG LM      R +T+NAVR V R    P     K   KI+SYL  T    + Y       +  + Y D+D+ +    RR VS  ++++   + SW+S  Q+  +  TSEAEY+A+ + +KE L    + + + PS +   +++F+DNE A  LA N  SS R+KHID +HH +R
Sbjct:  296 ETFSPTANAASIRLVVALACKYNLELLHLDIEQAFFQSKLDHEVLMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLLRIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDIL-YAGTKRLAEVIVEALGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIRSVLERFNICRTSSIPASPANDS-RSVMEDEEAGDVPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVLVAGCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEALFVNGMLQLLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLR 681          
BLAST of mRNA_H-elongata_contig6096.13638.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 223 bits (568), Expect = 4.170e-61
Identity = 143/389 (36.76%), Postives = 211/389 (54.24%), Query Frame = 1
Query:   13 PTPATAPIRMLLTTAVVKDGELRHFDATQAFLRADIDEYMYIEIPDEYQECPGPVRLLNKAIYGLVQAGRCWNNKV*DDISAIGFKQAKADPCVFRKVVDGEGEVVVIVHVDGILAHAKAKATMDIFATELGQKVQLKDIRDDMY*MGCHITRNRKARELQIDQHLYVESMVEKFD------IPATPGVKTLPKADKPRNPEEKEEIKKLPYREAVGALM*TTMMRRLDTANAVRAVPRFCENPGPVHKKVVIKIMSYLLHTRDRRITYGGQGCGLCMVAYTDSDYGACLNTRRLVSRTVLMLVKGMTSWYSTIQELTASRTSEAEYVALLEEIKEILNFR*VQEFMEPSTRAGGVNMFKDNEEATKLATNKHSSRRTKHIDAKHHMVR 1161
            P P++A I+++L  A  K   L H+D  QA+  A +DE +++++P    +    +    +AIYGL Q+GR W     D +   GF+Q KADPCVFRK+VD    ++++++VD IL     +   ++ A+ L +K   K++ +  +  GC I R+ +A  L+I Q  Y++SMVE+FD      IPATPG    PK        E EE  + P REA+G++M  +   R D + AVRAV R    P   H   + KI+ YL  TRD  ITY  +G GL +  Y D+ Y A    RR VS     +   + S  S  Q + +  ++EAEY+A  E +KE L  R V  F+ P T    + + +DN+ A  L  N  SS RTKHID ++H +R
Sbjct:  824 PCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLAS-LNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASY-ADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIR 1202          
BLAST of mRNA_H-elongata_contig6096.13638.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 223 bits (568), Expect = 4.840e-61
Identity = 143/389 (36.76%), Postives = 211/389 (54.24%), Query Frame = 1
Query:   13 PTPATAPIRMLLTTAVVKDGELRHFDATQAFLRADIDEYMYIEIPDEYQECPGPVRLLNKAIYGLVQAGRCWNNKV*DDISAIGFKQAKADPCVFRKVVDGEGEVVVIVHVDGILAHAKAKATMDIFATELGQKVQLKDIRDDMY*MGCHITRNRKARELQIDQHLYVESMVEKFD------IPATPGVKTLPKADKPRNPEEKEEIKKLPYREAVGALM*TTMMRRLDTANAVRAVPRFCENPGPVHKKVVIKIMSYLLHTRDRRITYGGQGCGLCMVAYTDSDYGACLNTRRLVSRTVLMLVKGMTSWYSTIQELTASRTSEAEYVALLEEIKEILNFR*VQEFMEPSTRAGGVNMFKDNEEATKLATNKHSSRRTKHIDAKHHMVR 1161
            P P++A I+++L  A  K   L H+D  QA+  A +DE +++++P    +    +    +AIYGL Q+GR W     D +   GF+Q KADPCVFRK+VD    ++++++VD IL     +   ++ A+ L +K   K++ +  +  GC I R+ +A  L+I Q  Y++SMVE+FD      IPATPG    PK        E EE  + P REA+G++M  +   R D + AVRAV R    P   H   + KI+ YL  TRD  ITY  +G GL +  Y D+ Y A    RR VS     +   + S  S  Q + +  ++EAEY+A  E +KE L  R V  F+ P T    + + +DN+ A  L  N  SS RTKHID ++H +R
Sbjct: 1203 PCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLAS-LNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASY-ADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIR 1581          
BLAST of mRNA_H-elongata_contig6096.13638.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 223 bits (568), Expect = 4.890e-61
Identity = 143/389 (36.76%), Postives = 211/389 (54.24%), Query Frame = 1
Query:   13 PTPATAPIRMLLTTAVVKDGELRHFDATQAFLRADIDEYMYIEIPDEYQECPGPVRLLNKAIYGLVQAGRCWNNKV*DDISAIGFKQAKADPCVFRKVVDGEGEVVVIVHVDGILAHAKAKATMDIFATELGQKVQLKDIRDDMY*MGCHITRNRKARELQIDQHLYVESMVEKFD------IPATPGVKTLPKADKPRNPEEKEEIKKLPYREAVGALM*TTMMRRLDTANAVRAVPRFCENPGPVHKKVVIKIMSYLLHTRDRRITYGGQGCGLCMVAYTDSDYGACLNTRRLVSRTVLMLVKGMTSWYSTIQELTASRTSEAEYVALLEEIKEILNFR*VQEFMEPSTRAGGVNMFKDNEEATKLATNKHSSRRTKHIDAKHHMVR 1161
            P P++A I+++L  A  K   L H+D  QA+  A +DE +++++P    +    +    +AIYGL Q+GR W     D +   GF+Q KADPCVFRK+VD    ++++++VD IL     +   ++ A+ L +K   K++ +  +  GC I R+ +A  L+I Q  Y++SMVE+FD      IPATPG    PK        E EE  + P REA+G++M  +   R D + AVRAV R    P   H   + KI+ YL  TRD  ITY  +G GL +  Y D+ Y A    RR VS     +   + S  S  Q + +  ++EAEY+A  E +KE L  R V  F+ P T    + + +DN+ A  L  N  SS RTKHID ++H +R
Sbjct: 1223 PCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDEDCEELLAS-LNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASY-ADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIR 1601          
BLAST of mRNA_H-elongata_contig6096.13638.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 223 bits (568), Expect = 4.950e-61
Identity = 143/389 (36.76%), Postives = 211/389 (54.24%), Query Frame = 1
Query:   13 PTPATAPIRMLLTTAVVKDGELRHFDATQAFLRADIDEYMYIEIPDEYQECPGPVRLLNKAIYGLVQAGRCWNNKV*DDISAIGFKQAKADPCVFRKVVDGEGEVVVIVHVDGILAHAKAKATMDIFATELGQKVQLKDIRDDMY*MGCHITRNRKARELQIDQHLYVESMVEKFD------IPATPGVKTLPKADKPRNPEEKEEIKKLPYREAVGALM*TTMMRRLDTANAVRAVPRFCENPGPVHKKVVIKIMSYLLHTRDRRITYGGQGCGLCMVAYTDSDYGACLNTRRLVSRTVLMLVKGMTSWYSTIQELTASRTSEAEYVALLEEIKEILNFR*VQEFMEPSTRAGGVNMFKDNEEATKLATNKHSSRRTKHIDAKHHMVR 1161
            P P++A I+++L  A  K   L H+D  QA+  A +DE +++++P    +    +    +AIYGL Q+GR W     D +   GF+Q KADPCVFRK+VD    ++++++VD IL     +   ++ A+ L +K   K++ +  +  GC I R+ +A  L+I Q  Y++SMVE+FD      IPATPG    PK        E EE  + P REA+G++M  +   R D + AVRAV R    P   H   + KI+ YL  TRD  ITY  +G GL +  Y D+ Y A    RR VS     +   + S  S  Q + +  ++EAEY+A  E +KE L  R V  F+ P T    + + +DN+ A  L  N  SS RTKHID ++H +R
Sbjct: 1366 PCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLAS-LNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASY-ADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIR 1744          
BLAST of mRNA_H-elongata_contig6096.13638.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 221 bits (563), Expect = 6.990e-61
Identity = 129/388 (33.25%), Postives = 215/388 (55.41%), Query Frame = 1
Query:    1 ENYLPTPATAPIRMLLTTAVVKDGELRHFDATQAFLRADIDEYMYIEIPDEYQECPGPVRLLNKAIYGLVQAGRCWNNKV*DDISAIGFKQAKADPCVFRKVVDGEGEVVVIVHVDGILAHAKAKATMDIFATELGQKVQLKDIRDDMY*MGCHITRNRKARELQIDQHLYVESMVEKFDIPATPGVKTLPKADKPRNPEEKEEIKKLPYREAVGALM*TTMMRRLDTANAVRAVPRFCENPGPVHKKVVIKIMSYLLHTRDRRITYG-GQGCGLCMVAYTDSDYGACLNTRRLVSRTVLMLVKGMTSWYSTIQELTASRTSEAEYVALLEEIKEILNFR*VQEFMEPSTRAGGVNMFKDNEEATKLATNKHSSRRTKHIDAKHHMVR 1161
            E + PT   A  R+++  A   + EL H+D  QAF+++++D  +++++P       G V  LNK++YGL QA R +  ++  ++  IGF+Q+ +DPCV R ++  E   +V +HVD IL +A  K+  ++    LG  +  K++ +  + +GC   R+R+A  +++ Q  Y+ S++E+F++  T  +   P  D  R+  E E    +P+RE VG+LM      R D +NAVRAV R    P   H K   KI++YLL T    + +          + Y D+D+ +  N RR VS  ++++      W S  Q+  +  TSEAEY+A+ + +KE L    + +F+ PS +   +++ +DNE A  LA N  SS R+KHID +HH +R
Sbjct:  531 ETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDIL-YAGTKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPASPTNDY-RSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLR 916          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6096.13638.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JLN0_9PHAE1.360e-7036.08Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQB8_9PHAE8.310e-6936.08Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K2R1_9PHAE4.250e-6636.08Integrase catalytic domain-containing protein n=3 ... [more]
A0A6H5JEF2_9PHAE1.950e-6233.76Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JV80_9PHAE2.350e-6233.76Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE4.170e-6136.76Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE4.840e-6136.76Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE4.890e-6136.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE4.950e-6136.76Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5KKK1_9PHAE6.990e-6133.25Integrase catalytic domain-containing protein n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6096contigH-elongata_contig6096:4892..6070 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score81.6
Seed ortholog evalue2.6e-13
Seed eggNOG ortholog4096.XP_009787759.1
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GG2K@35493,44UC5@71274,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelasterids
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Exons2
Model size1161
Cds size357
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6096.13638.1prot_H-elongata_contig6096.13638.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6096 5573..5929 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930984.5642436-UTR-H-elongata_contig6096:4891..54311622930984.5642436-UTR-H-elongata_contig6096:4891..5431Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6096 4892..5431 +
1691679650.9336374-UTR-H-elongata_contig6096:4891..54311691679650.9336374-UTR-H-elongata_contig6096:4891..5431Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6096 4892..5431 +
1622930984.5819473-UTR-H-elongata_contig6096:5449..55721622930984.5819473-UTR-H-elongata_contig6096:5449..5572Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6096 5450..5572 +
1691679650.945364-UTR-H-elongata_contig6096:5449..55721691679650.945364-UTR-H-elongata_contig6096:5449..5572Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6096 5450..5572 +
1622930984.616109-UTR-H-elongata_contig6096:5929..60701622930984.616109-UTR-H-elongata_contig6096:5929..6070Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6096 5930..6070 +
1691679650.9650216-UTR-H-elongata_contig6096:5929..60701691679650.9650216-UTR-H-elongata_contig6096:5929..6070Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6096 5930..6070 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930984.5972319-CDS-H-elongata_contig6096:5572..59291622930984.5972319-CDS-H-elongata_contig6096:5572..5929Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6096 5573..5929 +
1691679650.9553235-CDS-H-elongata_contig6096:5572..59291691679650.9553235-CDS-H-elongata_contig6096:5572..5929Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6096 5573..5929 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6096.13638.1

>prot_H-elongata_contig6096.13638.1 ID=prot_H-elongata_contig6096.13638.1|Name=mRNA_H-elongata_contig6096.13638.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp
MMRRLDTANAVRAVPRFCENPGPVHKKVVIKIMSYLLHTRDRRITYGGQG
CGLCMVAYTDSDYGACLNTRRLVSRTVLMLVKGMTSWYSTIQELTASRTS
EAEYVALLEEIKEILNFR*
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mRNA from alignment at H-elongata_contig6096:4892..6070+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6096.13638.1 ID=mRNA_H-elongata_contig6096.13638.1|Name=mRNA_H-elongata_contig6096.13638.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1179bp|location=Sequence derived from alignment at H-elongata_contig6096:4892..6070+ (Himanthalia elongata Himel1 dioecious)
GAAAATTACTTGCCCACGCCAGCGACCGCGCCAATCCGGATGCTTTTGAC GACGGCAGTGGTCAAGGACGGAGAGCTGCGCCATTTCGACGCAACGCAGG CATTCTTGAGGGCGGACATCGATGAGTATATGTACATCGAGATCCCCGAT GAGTACCAGGAGTGTCCGGGGCCAGTGAGATTGCTGAACAAAGCCATTTA CGGACTCGTACAGGCGGGGAGGTGCTGGAACAACAAGGTTTGAGATGATA TATCGGCGATTGGATTCAAGCAGGCAAAGGCGGATCCGTGCGTGTTCCGT AAGGTCGTTGACGGCGAGGGGGAAGTGGTGGTGATTGTACACGTGGACGG CATTCTTGCTCACGCGAAAGCAAAAGCGACGATGGATATATTCGCGACTG AGCTAGGACAAAAGGTCCAATTGAAGGATATAAGAGACGACATGTATTAA ATGGGCTGTCACATCACGAGGAACCGCAAGGCGCGCGAGTTACAGATCGA TCAACACTTGTACGTGGAGTCGATGGTGGAAAAGTTCGACGTCTAGAAGG GAAGCAAGATACCGGCTACGCCGGGAGTAAAAACACTCCCAAAGGCGGAC AAGCCGCGGAACCCGGAGGAGAAGGAGGAAATAAAGAAGTTGCCATACCG GGAGGCAGTAGGGGCGCTTATGTGAACGACGATGATGAGACGGCTGGACA CTGCGAACGCAGTACGCGCTGTGCCCAGGTTCTGCGAAAATCCAGGGCCG GTGCATAAGAAGGTAGTGATAAAGATCATGTCGTATCTCCTCCACACGAG GGATCGGAGGATTACATACGGTGGACAGGGCTGTGGACTCTGCATGGTGG CATATACGGACTCGGATTACGGAGCCTGCTTGAATACGAGACGATTGGTG TCGCGTACTGTGTTGATGCTGGTGAAGGGGATGACCAGCTGGTACTCAAC GATACAAGAACTGACAGCATCGCGTACCTCGGAGGCAGAGTACGTTGCCT TATTAGAAGAGATAAAGGAGATTCTAAATTTTAGATAGGTTCAGGAGTTC ATGGAACCGTCGACGAGGGCCGGTGGAGTGAATATGTTCAAGGACAATGA GGAGGCCACCAAGCTGGCCACGAACAAGCATTCTAGTCGTAGGACAAAGC ACATTGATGCGAAACACCATATGGTGAGG
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Coding sequence (CDS) from alignment at H-elongata_contig6096:4892..6070+

>mRNA_H-elongata_contig6096.13638.1 ID=mRNA_H-elongata_contig6096.13638.1|Name=mRNA_H-elongata_contig6096.13638.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=714bp|location=Sequence derived from alignment at H-elongata_contig6096:4892..6070+ (Himanthalia elongata Himel1 dioecious)
ATGATGAGACGGCTGGACACTGCGAACGCAGTACGCGCTGTGCCCAGGTT
CTGCGAAAATCCAGGGCCGGTGCATAAGAAGGTAGTGATAAAGATCATGT
CGTATCTCCTCCACACGAGGGATCGGAGGATTACATACGGTGGACAGGGC
TGTGGACTCTGCATGGTGGCATATACGGACTCGGATTACGGAGCCTGCTT
GAATACGAGACGATTGGTGTCGCGTACTGTGTTGATGCTGGTGAAGGGGA
TGACCAGCTGGTACTCAACGATACAAGAACTGACAGCATCGCGTACCTCG
GAGGCAGAGTACGTTGCCTTATTAGAAGAGATAAAGGAGATTCTAAATTT
TAGATAGATGATGAGACGGCTGGACACTGCGAACGCAGTACGCGCTGTGC
CCAGGTTCTGCGAAAATCCAGGGCCGGTGCATAAGAAGGTAGTGATAAAG
ATCATGTCGTATCTCCTCCACACGAGGGATCGGAGGATTACATACGGTGG
ACAGGGCTGTGGACTCTGCATGGTGGCATATACGGACTCGGATTACGGAG
CCTGCTTGAATACGAGACGATTGGTGTCGCGTACTGTGTTGATGCTGGTG
AAGGGGATGACCAGCTGGTACTCAACGATACAAGAACTGACAGCATCGCG
TACCTCGGAGGCAGAGTACGTTGCCTTATTAGAAGAGATAAAGGAGATTC
TAAATTTTAGATAG
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