mRNA_H-elongata_contig60950.13637.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60950.13637.1
Unique NamemRNA_H-elongata_contig60950.13637.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig60950.13637.1 vs. uniprot
Match: D7G1C0_ECTSI (Lissencephaly-1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1C0_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 1.170e-32
Identity = 64/75 (85.33%), Postives = 71/75 (94.67%), Query Frame = 1
Query:    1 RKVMDLEARLDQAQEDLRSGVRPGRERGAG-SDRVLPRAPAKAALAGHRNPITCVSLHPVYSVVASASEDATVKV 222
            RKVMDLEARLDQAQ+DL+SGVRPGRE+GAG SDRVLPRAPAK  L GHRNP+TCV+LHP+YSVVAS+SEDATVKV
Sbjct:   64 RKVMDLEARLDQAQQDLKSGVRPGREKGAGGSDRVLPRAPAKGVLTGHRNPVTCVALHPLYSVVASSSEDATVKV 138          
BLAST of mRNA_H-elongata_contig60950.13637.1 vs. uniprot
Match: A0A6H5JKZ3_9PHAE (Ge1_WD40 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKZ3_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 3.080e-31
Identity = 60/72 (83.33%), Postives = 68/72 (94.44%), Query Frame = 1
Query:   10 MDLEARLDQAQEDLRSGVRPGRERGAG-SDRVLPRAPAKAALAGHRNPITCVSLHPVYSVVASASEDATVKV 222
            M+LEARLDQAQ+DL+SGVRPGRE+GAG SDRVLPRAPAK  L GHRNP+TCV+LHP+YSVVAS+SEDATVKV
Sbjct:    1 MELEARLDQAQDDLKSGVRPGREKGAGGSDRVLPRAPAKGVLTGHRNPVTCVALHPLYSVVASSSEDATVKV 72          
BLAST of mRNA_H-elongata_contig60950.13637.1 vs. uniprot
Match: A0A835Z701_9STRA (Lissencephaly-1 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z701_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 2.900e-16
Identity = 45/77 (58.44%), Postives = 58/77 (75.32%), Query Frame = 1
Query:    1 RKVMDLEARLD---QAQEDLRSGVRPGRERGAGSDRVLPRAPAKAALAGHRNPITCVSLHPVYSVVASASEDATVKV 222
            RKV+DLEA+L      Q       RPGRE+ AG+ R+LPRAPAK  LAGHR+ +T V++HPVYS+VASASEDA+V++
Sbjct:   64 RKVLDLEAKLAAMVSEQSSAGGAQRPGREKAAGA-RLLPRAPAKHLLAGHRSSVTAVAMHPVYSLVASASEDASVRI 139          
BLAST of mRNA_H-elongata_contig60950.13637.1 vs. uniprot
Match: A0A481SYL0_9HEXA (Lissencephaly-1 homolog n=1 Tax=Isotomurus palustris TaxID=36144 RepID=A0A481SYL0_9HEXA)

HSP 1 Score: 77.8 bits (190), Expect = 4.720e-15
Identity = 41/74 (55.41%), Postives = 56/74 (75.68%), Query Frame = 1
Query:    1 RKVMDLEARLDQAQEDLRSGVRPGRERGAGSDRVLPRAPAKAALAGHRNPITCVSLHPVYSVVASASEDATVKV 222
            +KVM+LEA+L +A+ +  SG  P RE+ + SD  +PR P K AL GHR+P+T V LHP+YS+V SASEDAT++V
Sbjct:   70 KKVMELEAKLSEAEREFSSGA-PSREKRSSSD-WIPRPPEKFALRGHRSPVTRVLLHPIYSLVVSASEDATIRV 141          
BLAST of mRNA_H-elongata_contig60950.13637.1 vs. uniprot
Match: H2XLI2_CIOIN (Lissencephaly-1 homolog n=3 Tax=Ciona TaxID=7718 RepID=H2XLI2_CIOIN)

HSP 1 Score: 77.4 bits (189), Expect = 6.310e-15
Identity = 40/74 (54.05%), Postives = 54/74 (72.97%), Query Frame = 1
Query:    1 RKVMDLEARLDQAQEDLRSGVRPGRERGAGSDRVLPRAPAKAALAGHRNPITCVSLHPVYSVVASASEDATVKV 222
            RKVMDLEA+L++ Q++ R G+ P  ++       +PR P + AL+GHRNPIT V  HPVYSVV SA+ED+T+KV
Sbjct:   64 RKVMDLEAKLNELQKETRDGLTPHNKKDPSE--WIPRPPERCALSGHRNPITRVIFHPVYSVVLSAAEDSTIKV 135          
BLAST of mRNA_H-elongata_contig60950.13637.1 vs. uniprot
Match: A0A067CYC2_SAPPC (Lissencephaly-1 homolog n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CYC2_SAPPC)

HSP 1 Score: 75.9 bits (185), Expect = 2.300e-14
Identity = 38/77 (49.35%), Postives = 56/77 (72.73%), Query Frame = 1
Query:    1 RKVMDLEARLDQAQEDLRSGVRPGRERGAGSDR---VLPRAPAKAALAGHRNPITCVSLHPVYSVVASASEDATVKV 222
            RKVM+LE ++ Q ++D + G    R    G++R   +LPRAP K +++GHR+PITCV  HPV+SV+ ++SEDAT+KV
Sbjct:   65 RKVMELETKIQQLEDDAKLGNVVSRRDVTGANRDAALLPRAPPKYSMSGHRSPITCVLFHPVFSVIVTSSEDATIKV 141          
BLAST of mRNA_H-elongata_contig60950.13637.1 vs. uniprot
Match: A0A485LG79_9STRA (Lissencephaly-1 homolog n=7 Tax=Aphanomyces TaxID=100860 RepID=A0A485LG79_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 2.300e-14
Identity = 39/76 (51.32%), Postives = 54/76 (71.05%), Query Frame = 1
Query:    1 RKVMDLEARLDQAQEDLRSGVRPGRE--RGAGSDRVLPRAPAKAALAGHRNPITCVSLHPVYSVVASASEDATVKV 222
            RKVM+LE+++ Q +ED + G    R    G G D  LPRAP K +++GHR+PIT V  HP++SVV ++SEDAT+KV
Sbjct:   65 RKVMELESKIQQMEEDAKLGGVVSRRDVTGIGRDAALPRAPPKYSMSGHRSPITSVVFHPIFSVVVTSSEDATIKV 140          
BLAST of mRNA_H-elongata_contig60950.13637.1 vs. uniprot
Match: A0A418AZ71_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418AZ71_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 2.330e-14
Identity = 41/78 (52.56%), Postives = 55/78 (70.51%), Query Frame = 1
Query:    1 RKVMDLEARLDQAQEDLRSGVRPGRER--GAGSDR--VLPRAPAKAALAGHRNPITCVSLHPVYSVVASASEDATVKV 222
            RKVM+LE+++ Q +ED + G    R    G G D    LPRAP K +++GHR+PITCV  HPV+SVV ++SEDAT+KV
Sbjct:   65 RKVMELESKIQQLEEDAKLGGVVSRRDVIGIGHDASSFLPRAPPKHSMSGHRSPITCVVFHPVFSVVVTSSEDATIKV 142          
BLAST of mRNA_H-elongata_contig60950.13637.1 vs. uniprot
Match: UPI00074270B1 (lissencephaly-1 homolog B-like n=1 Tax=Cyprinodon variegatus TaxID=28743 RepID=UPI00074270B1)

HSP 1 Score: 72.0 bits (175), Expect = 2.630e-14
Identity = 37/76 (48.68%), Postives = 55/76 (72.37%), Query Frame = 1
Query:    1 RKVMDLEARLDQAQEDLRSGVRPGRERGAGSDRVLPRAPAKAALAGHRNPITCVSLHPVYSVVASASEDATVKVCL 228
            +KVM+LE++L++ +ED+  G   G++R       +PR P + AL+GHR P+T V  HPV+SV+ +ASEDAT+KVCL
Sbjct:   63 KKVMELESKLNEVKEDMTYGGPVGQKRDP--KEWIPRPPERYALSGHRAPVTRVIFHPVFSVMVTASEDATIKVCL 136          
BLAST of mRNA_H-elongata_contig60950.13637.1 vs. uniprot
Match: A0A0L0SC48_ALLM3 (Nuclear distribution protein PAC1 n=2 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0SC48_ALLM3)

HSP 1 Score: 75.5 bits (184), Expect = 3.110e-14
Identity = 41/74 (55.41%), Postives = 53/74 (71.62%), Query Frame = 1
Query:    1 RKVMDLEARLDQAQEDLRSG-VRPGRERGAGSDRVLPRAPAKAALAGHRNPITCVSLHPVYSVVASASEDATVK 219
            RK++DLE++L Q Q ++  G +RP +     S  VLPRAPA+  LAGHR+PIT V  HP Y V+ASASEDAT+K
Sbjct:   66 RKILDLESKLAQMQAEVNDGPIRPNKS----SADVLPRAPARHELAGHRSPITTVIFHPAYPVLASASEDATIK 135          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60950.13637.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1C0_ECTSI1.170e-3285.33Lissencephaly-1 homolog n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JKZ3_9PHAE3.080e-3183.33Ge1_WD40 domain-containing protein (Fragment) n=1 ... [more]
A0A835Z701_9STRA2.900e-1658.44Lissencephaly-1 homolog n=1 Tax=Tribonema minus Ta... [more]
A0A481SYL0_9HEXA4.720e-1555.41Lissencephaly-1 homolog n=1 Tax=Isotomurus palustr... [more]
H2XLI2_CIOIN6.310e-1554.05Lissencephaly-1 homolog n=3 Tax=Ciona TaxID=7718 R... [more]
A0A067CYC2_SAPPC2.300e-1449.35Lissencephaly-1 homolog n=4 Tax=Saprolegniaceae Ta... [more]
A0A485LG79_9STRA2.300e-1451.32Lissencephaly-1 homolog n=7 Tax=Aphanomyces TaxID=... [more]
A0A418AZ71_9STRA2.330e-1452.56Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
UPI00074270B12.630e-1448.68lissencephaly-1 homolog B-like n=1 Tax=Cyprinodon ... [more]
A0A0L0SC48_ALLM33.110e-1455.41Nuclear distribution protein PAC1 n=2 Tax=Allomyce... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60950contigH-elongata_contig60950:328..558 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.9
Seed ortholog evalue6.4e-26
Seed eggNOG ortholog2880.D7G1C0
KEGG rclassRC00037,RC00094
KEGG koko:K16794
KEGG ReactionR04452
KEGG Pathwayko00565,ko01100,map00565,map01100
GOsGO:0000775,GO:0000776,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0005874,GO:0005875,GO:0005938,GO:0007154,GO:0007165,GO:0008017,GO:0008092,GO:0008104,GO:0008150,GO:0009987,GO:0015630,GO:0015631,GO:0017016,GO:0017048,GO:0019899,GO:0019932,GO:0019933,GO:0019935,GO:0023052,GO:0031267,GO:0031592,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035556,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044380,GO:0044422,GO:0044424,GO:0044427,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0044877,GO:0045504,GO:0050789,GO:0050794,GO:0050896,GO:0051020,GO:0051179,GO:0051640,GO:0051641,GO:0051642,GO:0051645,GO:0051716,GO:0061842,GO:0065007,GO:0070727,GO:0070840,GO:0071539,GO:0071944,GO:0072698,GO:0098687,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:1905508
EggNOG free text desc.cell division
EggNOG OGsKOG0295@1,KOG0295@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDynein regulator LIS1
Ec32 orthologEc-00_005540.1
Exons1
Model size231
Cds size222
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930984.49389-UTR-H-elongata_contig60950:327..3361622930984.49389-UTR-H-elongata_contig60950:327..336Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60950 328..336 +
1691679650.9103534-UTR-H-elongata_contig60950:327..3361691679650.9103534-UTR-H-elongata_contig60950:327..336Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60950 328..336 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930984.5110948-CDS-H-elongata_contig60950:336..5581622930984.5110948-CDS-H-elongata_contig60950:336..558Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60950 337..558 +
1691679650.923613-CDS-H-elongata_contig60950:336..5581691679650.923613-CDS-H-elongata_contig60950:336..558Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60950 337..558 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60950.13637.1prot_H-elongata_contig60950.13637.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60950 337..558 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60950.13637.1

>prot_H-elongata_contig60950.13637.1 ID=prot_H-elongata_contig60950.13637.1|Name=mRNA_H-elongata_contig60950.13637.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
MDLEARLDQAQEDLRSGVRPGRERGAGSDRVLPRAPAKAALAGHRNPITC
VSLHPVYSVVASASEDATVKVCL*
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mRNA from alignment at H-elongata_contig60950:328..558+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60950.13637.1 ID=mRNA_H-elongata_contig60950.13637.1|Name=mRNA_H-elongata_contig60950.13637.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=231bp|location=Sequence derived from alignment at H-elongata_contig60950:328..558+ (Himanthalia elongata Himel1 dioecious)
CGTAAGGTGATGGATCTGGAGGCGCGGCTCGATCAGGCGCAGGAGGATCT GAGGAGCGGGGTTAGACCCGGGAGAGAAAGAGGGGCCGGAAGCGATCGCG TGCTGCCGAGGGCGCCAGCGAAGGCCGCGTTGGCGGGGCACCGAAATCCC ATCACATGTGTGTCCTTGCACCCGGTGTACAGCGTCGTGGCGTCGGCCAG CGAGGACGCGACCGTCAAGGTGTGCTTATGA
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Coding sequence (CDS) from alignment at H-elongata_contig60950:328..558+

>mRNA_H-elongata_contig60950.13637.1 ID=mRNA_H-elongata_contig60950.13637.1|Name=mRNA_H-elongata_contig60950.13637.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig60950:328..558+ (Himanthalia elongata Himel1 dioecious)
ATGGATCTGGAGGCGCGGCTCGATCAGGCGCAGGAGGATCTGAGGAGCGG
GGTTAGACCCGGGAGAGAAAGAGGGGCCGGAAGCGATCGCGTGCTGCCGA
GGGCGCCAGCGAAGGCCGCGTTGGCGGGGCACCGAAATCCCATCACATGT
GTGTCCTTGCACCCGGTGTACAGCGTCGTGGCGTCGGCCAGCGAGGACGC
GACCGTCAAGGTGTGCTTATGAATGGATCTGGAGGCGCGGCTCGATCAGG
CGCAGGAGGATCTGAGGAGCGGGGTTAGACCCGGGAGAGAAAGAGGGGCC
GGAAGCGATCGCGTGCTGCCGAGGGCGCCAGCGAAGGCCGCGTTGGCGGG
GCACCGAAATCCCATCACATGTGTGTCCTTGCACCCGGTGTACAGCGTCG
TGGCGTCGGCCAGCGAGGACGCGACCGTCAAGGTGTGCTTATGA
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