mRNA_H-elongata_contig60950.13637.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig60950.13637.1 vs. uniprot
Match: D7G1C0_ECTSI (Lissencephaly-1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1C0_ECTSI) HSP 1 Score: 126 bits (316), Expect = 1.170e-32 Identity = 64/75 (85.33%), Postives = 71/75 (94.67%), Query Frame = 1
Query: 1 RKVMDLEARLDQAQEDLRSGVRPGRERGAG-SDRVLPRAPAKAALAGHRNPITCVSLHPVYSVVASASEDATVKV 222
RKVMDLEARLDQAQ+DL+SGVRPGRE+GAG SDRVLPRAPAK L GHRNP+TCV+LHP+YSVVAS+SEDATVKV
Sbjct: 64 RKVMDLEARLDQAQQDLKSGVRPGREKGAGGSDRVLPRAPAKGVLTGHRNPVTCVALHPLYSVVASSSEDATVKV 138
BLAST of mRNA_H-elongata_contig60950.13637.1 vs. uniprot
Match: A0A6H5JKZ3_9PHAE (Ge1_WD40 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKZ3_9PHAE) HSP 1 Score: 119 bits (299), Expect = 3.080e-31 Identity = 60/72 (83.33%), Postives = 68/72 (94.44%), Query Frame = 1
Query: 10 MDLEARLDQAQEDLRSGVRPGRERGAG-SDRVLPRAPAKAALAGHRNPITCVSLHPVYSVVASASEDATVKV 222
M+LEARLDQAQ+DL+SGVRPGRE+GAG SDRVLPRAPAK L GHRNP+TCV+LHP+YSVVAS+SEDATVKV
Sbjct: 1 MELEARLDQAQDDLKSGVRPGREKGAGGSDRVLPRAPAKGVLTGHRNPVTCVALHPLYSVVASSSEDATVKV 72
BLAST of mRNA_H-elongata_contig60950.13637.1 vs. uniprot
Match: A0A835Z701_9STRA (Lissencephaly-1 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z701_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 2.900e-16 Identity = 45/77 (58.44%), Postives = 58/77 (75.32%), Query Frame = 1
Query: 1 RKVMDLEARLD---QAQEDLRSGVRPGRERGAGSDRVLPRAPAKAALAGHRNPITCVSLHPVYSVVASASEDATVKV 222
RKV+DLEA+L Q RPGRE+ AG+ R+LPRAPAK LAGHR+ +T V++HPVYS+VASASEDA+V++
Sbjct: 64 RKVLDLEAKLAAMVSEQSSAGGAQRPGREKAAGA-RLLPRAPAKHLLAGHRSSVTAVAMHPVYSLVASASEDASVRI 139
BLAST of mRNA_H-elongata_contig60950.13637.1 vs. uniprot
Match: A0A481SYL0_9HEXA (Lissencephaly-1 homolog n=1 Tax=Isotomurus palustris TaxID=36144 RepID=A0A481SYL0_9HEXA) HSP 1 Score: 77.8 bits (190), Expect = 4.720e-15 Identity = 41/74 (55.41%), Postives = 56/74 (75.68%), Query Frame = 1
Query: 1 RKVMDLEARLDQAQEDLRSGVRPGRERGAGSDRVLPRAPAKAALAGHRNPITCVSLHPVYSVVASASEDATVKV 222
+KVM+LEA+L +A+ + SG P RE+ + SD +PR P K AL GHR+P+T V LHP+YS+V SASEDAT++V
Sbjct: 70 KKVMELEAKLSEAEREFSSGA-PSREKRSSSD-WIPRPPEKFALRGHRSPVTRVLLHPIYSLVVSASEDATIRV 141
BLAST of mRNA_H-elongata_contig60950.13637.1 vs. uniprot
Match: H2XLI2_CIOIN (Lissencephaly-1 homolog n=3 Tax=Ciona TaxID=7718 RepID=H2XLI2_CIOIN) HSP 1 Score: 77.4 bits (189), Expect = 6.310e-15 Identity = 40/74 (54.05%), Postives = 54/74 (72.97%), Query Frame = 1
Query: 1 RKVMDLEARLDQAQEDLRSGVRPGRERGAGSDRVLPRAPAKAALAGHRNPITCVSLHPVYSVVASASEDATVKV 222
RKVMDLEA+L++ Q++ R G+ P ++ +PR P + AL+GHRNPIT V HPVYSVV SA+ED+T+KV
Sbjct: 64 RKVMDLEAKLNELQKETRDGLTPHNKKDPSE--WIPRPPERCALSGHRNPITRVIFHPVYSVVLSAAEDSTIKV 135
BLAST of mRNA_H-elongata_contig60950.13637.1 vs. uniprot
Match: A0A067CYC2_SAPPC (Lissencephaly-1 homolog n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CYC2_SAPPC) HSP 1 Score: 75.9 bits (185), Expect = 2.300e-14 Identity = 38/77 (49.35%), Postives = 56/77 (72.73%), Query Frame = 1
Query: 1 RKVMDLEARLDQAQEDLRSGVRPGRERGAGSDR---VLPRAPAKAALAGHRNPITCVSLHPVYSVVASASEDATVKV 222
RKVM+LE ++ Q ++D + G R G++R +LPRAP K +++GHR+PITCV HPV+SV+ ++SEDAT+KV
Sbjct: 65 RKVMELETKIQQLEDDAKLGNVVSRRDVTGANRDAALLPRAPPKYSMSGHRSPITCVLFHPVFSVIVTSSEDATIKV 141
BLAST of mRNA_H-elongata_contig60950.13637.1 vs. uniprot
Match: A0A485LG79_9STRA (Lissencephaly-1 homolog n=7 Tax=Aphanomyces TaxID=100860 RepID=A0A485LG79_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 2.300e-14 Identity = 39/76 (51.32%), Postives = 54/76 (71.05%), Query Frame = 1
Query: 1 RKVMDLEARLDQAQEDLRSGVRPGRE--RGAGSDRVLPRAPAKAALAGHRNPITCVSLHPVYSVVASASEDATVKV 222
RKVM+LE+++ Q +ED + G R G G D LPRAP K +++GHR+PIT V HP++SVV ++SEDAT+KV
Sbjct: 65 RKVMELESKIQQMEEDAKLGGVVSRRDVTGIGRDAALPRAPPKYSMSGHRSPITSVVFHPIFSVVVTSSEDATIKV 140
BLAST of mRNA_H-elongata_contig60950.13637.1 vs. uniprot
Match: A0A418AZ71_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418AZ71_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 2.330e-14 Identity = 41/78 (52.56%), Postives = 55/78 (70.51%), Query Frame = 1
Query: 1 RKVMDLEARLDQAQEDLRSGVRPGRER--GAGSDR--VLPRAPAKAALAGHRNPITCVSLHPVYSVVASASEDATVKV 222
RKVM+LE+++ Q +ED + G R G G D LPRAP K +++GHR+PITCV HPV+SVV ++SEDAT+KV
Sbjct: 65 RKVMELESKIQQLEEDAKLGGVVSRRDVIGIGHDASSFLPRAPPKHSMSGHRSPITCVVFHPVFSVVVTSSEDATIKV 142
BLAST of mRNA_H-elongata_contig60950.13637.1 vs. uniprot
Match: UPI00074270B1 (lissencephaly-1 homolog B-like n=1 Tax=Cyprinodon variegatus TaxID=28743 RepID=UPI00074270B1) HSP 1 Score: 72.0 bits (175), Expect = 2.630e-14 Identity = 37/76 (48.68%), Postives = 55/76 (72.37%), Query Frame = 1
Query: 1 RKVMDLEARLDQAQEDLRSGVRPGRERGAGSDRVLPRAPAKAALAGHRNPITCVSLHPVYSVVASASEDATVKVCL 228
+KVM+LE++L++ +ED+ G G++R +PR P + AL+GHR P+T V HPV+SV+ +ASEDAT+KVCL
Sbjct: 63 KKVMELESKLNEVKEDMTYGGPVGQKRDP--KEWIPRPPERYALSGHRAPVTRVIFHPVFSVMVTASEDATIKVCL 136
BLAST of mRNA_H-elongata_contig60950.13637.1 vs. uniprot
Match: A0A0L0SC48_ALLM3 (Nuclear distribution protein PAC1 n=2 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0SC48_ALLM3) HSP 1 Score: 75.5 bits (184), Expect = 3.110e-14 Identity = 41/74 (55.41%), Postives = 53/74 (71.62%), Query Frame = 1
Query: 1 RKVMDLEARLDQAQEDLRSG-VRPGRERGAGSDRVLPRAPAKAALAGHRNPITCVSLHPVYSVVASASEDATVK 219
RK++DLE++L Q Q ++ G +RP + S VLPRAPA+ LAGHR+PIT V HP Y V+ASASEDAT+K
Sbjct: 66 RKILDLESKLAQMQAEVNDGPIRPNKS----SADVLPRAPARHELAGHRSPITTVIFHPAYPVLASASEDATIK 135 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60950.13637.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig60950.13637.1 >prot_H-elongata_contig60950.13637.1 ID=prot_H-elongata_contig60950.13637.1|Name=mRNA_H-elongata_contig60950.13637.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp MDLEARLDQAQEDLRSGVRPGRERGAGSDRVLPRAPAKAALAGHRNPITCback to top mRNA from alignment at H-elongata_contig60950:328..558+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig60950.13637.1 ID=mRNA_H-elongata_contig60950.13637.1|Name=mRNA_H-elongata_contig60950.13637.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=231bp|location=Sequence derived from alignment at H-elongata_contig60950:328..558+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig60950:328..558+ >mRNA_H-elongata_contig60950.13637.1 ID=mRNA_H-elongata_contig60950.13637.1|Name=mRNA_H-elongata_contig60950.13637.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig60950:328..558+ (Himanthalia elongata Himel1 dioecious)back to top |