mRNA_H-elongata_contig6079.13616.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6079.13616.1
Unique NamemRNA_H-elongata_contig6079.13616.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig6079.13616.1 vs. uniprot
Match: D7G782_ECTSI (Globin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G782_ECTSI)

HSP 1 Score: 203 bits (516), Expect = 1.390e-64
Identity = 98/144 (68.06%), Postives = 116/144 (80.56%), Query Frame = 1
Query:    1 SEAVKDVEAYKAEIRRTFNLVKPISAEAASIFYPTLWELDPPTKELFRDTDMDKQGAKLMKILGLAVSSLDKMDKLVPILRNLGKRHVSYGVTAAMYPSVSEALLLTFDKGLGQECTSETKEAWSWVLEVISAICIDAAKEVNP 432
            +E   DVE YKAEIRRTF LV+PIS +AA IFYPTLWE+D  TK LF+DTDMDKQG KLMK LG+AV+ L+KMD L PIL NLG++HV YGVT  MYPSV +ALL+TF+KGLG+ECT  T +AW+WV  +IS+ICI AA EV P
Sbjct:   11 AEGEVDVEGYKAEIRRTFALVEPISVQAAGIFYPTLWEVDTSTKPLFKDTDMDKQGEKLMKTLGVAVAMLNKMDTLKPILENLGRKHVDYGVTPEMYPSVGKALLITFEKGLGEECTPLTTKAWTWVFGIISSICIAAASEVKP 154          
BLAST of mRNA_H-elongata_contig6079.13616.1 vs. uniprot
Match: D7FYD1_ECTSI (GLOBIN domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYD1_ECTSI)

HSP 1 Score: 183 bits (465), Expect = 1.460e-56
Identity = 86/134 (64.18%), Postives = 110/134 (82.09%), Query Frame = 1
Query:   22 EAYKAEIRRTFNLVKPISAEAASIFYPTLWELDPPTKELFRDTDMDKQGAKLMKILGLAVSSLDKMDKLVPILRNLGKRHVSYGVTAAMYPSVSEALLLTFDKGLGQECTSETKEAWSWVLEVISAICIDAAKE 423
            E+YKAE+RRT  L+KPI  EAA+IFYPTL+E+DP TK LF+D DM+KQGAKLMK++G+AV  LDKMD+  P+L  LGK+HV+YGVT  MYPSV  ALL+T +KGLG+EC   TK+AW+WV+  I+A+CI AA+E
Sbjct:   10 ESYKAEVRRTHALLKPIQIEAAAIFYPTLFEVDPSTKPLFKDVDMEKQGAKLMKVIGVAVMMLDKMDQFKPMLVKLGKKHVTYGVTDDMYPSVVSALLITLEKGLGEECHQLTKDAWAWVMNSIAAVCIAAARE 143          
BLAST of mRNA_H-elongata_contig6079.13616.1 vs. uniprot
Match: A0A5C6AX78_9BACT (Flavohemoprotein n=1 Tax=Rhodopirellula pilleata TaxID=2714738 RepID=A0A5C6AX78_9BACT)

HSP 1 Score: 129 bits (323), Expect = 1.580e-35
Identity = 65/132 (49.24%), Postives = 90/132 (68.18%), Query Frame = 1
Query:   40 IRRTFNLVKPISAEAASIFYPTLWELDPPTKELFRDTDMDKQGAKLMKILGLAVSSLDKMDKLVPILRNLGKRHVSYGVTAAMYPSVSEALLLTFDKGLGQECTSETKEAWSWVLEVISAICIDAAKEVNPS 435
            ++ ++  VKPIS +AA +FY  L+ELDP  K LF+  DM +QG KLM +L LAV+SL K+D +VP +++LG+RHV YGV    Y +V EALL T DKGLG+  T + KEAW+     +S + +DAA E  P+
Sbjct:    9 VQSSWEQVKPISEQAAELFYGRLFELDPSLKPLFKG-DMKEQGKKLMAMLNLAVTSLTKLDAIVPAVQDLGRRHVQYGVPDESYQTVGEALLWTLDKGLGEAFTEDVKEAWTQTYVTLSTVMLDAAHESEPA 139          
BLAST of mRNA_H-elongata_contig6079.13616.1 vs. uniprot
Match: A0A1B4V7H3_9GAMM (Hemin receptor n=1 Tax=Sulfurifustis variabilis TaxID=1675686 RepID=A0A1B4V7H3_9GAMM)

HSP 1 Score: 128 bits (321), Expect = 3.670e-35
Identity = 66/129 (51.16%), Postives = 92/129 (71.32%), Query Frame = 1
Query:   31 KAEIRRTFNLVKPISAEAASIFYPTLWELDPPTKELFRDTDMDKQGAKLMKILGLAVSSLDKMDKLVPILRNLGKRHVSYGVTAAMYPSVSEALLLTFDKGLGQECTSETKEAWSWVLEVISAICIDAA 417
            K  ++ TF  V PI+ +AA++FY  L+ELDP  K LFR  DM +QGAKLM+++ +AV+ LD+M +LVP++++LG+RHV+YGVTAA Y +V  ALL T  +GLG   T E +EAW  V  V++   IDAA
Sbjct:    6 KLLVQATFTQVAPIADQAAALFYRRLFELDPSLKALFRG-DMREQGAKLMRMIAMAVNGLDRMSELVPVVQDLGRRHVAYGVTAAHYETVGAALLWTLGQGLGPSFTPEVREAWGAVYGVLAQTMIDAA 133          
BLAST of mRNA_H-elongata_contig6079.13616.1 vs. uniprot
Match: UPI0016852984 (globin domain-containing protein n=1 Tax=Spongiibacter pelagi TaxID=2760804 RepID=UPI0016852984)

HSP 1 Score: 123 bits (308), Expect = 2.620e-33
Identity = 68/133 (51.13%), Postives = 89/133 (66.92%), Query Frame = 1
Query:   31 KAEIRRTFNLVKPISAEAASIFYPTLWELDPPTKELFRDTDMDKQGAKLMKILGLAVSSLDKMDKLVPILRNLGKRHVSYGVTAAMYPSVSEALLLTFDKGLGQECTSETKEAWSWVLEVISAICIDAAKEVN 429
            K  ++ +F+ V+PI+  AA IFY  L+ELDP  K LF   DM +QG KLM +LG AV +LD ++ LVP+++ LG+RHVSYGV AA Y +V +ALL T  KGLG + T E KEAW  V  V+S+  I AA  V 
Sbjct:    6 KELVQSSFDKVEPIADVAAEIFYARLFELDPSLKPLFSG-DMAEQGKKLMTMLGTAVRALDNLEALVPVVQRLGERHVSYGVEAAHYATVGQALLDTLAKGLGDDFTPEVKEAWGVVYGVLSSTMIAAADAVK 137          
BLAST of mRNA_H-elongata_contig6079.13616.1 vs. uniprot
Match: A0A5M6CWU7_9BACT (Hemin receptor n=1 Tax=Roseiconus nitratireducens TaxID=2605748 RepID=A0A5M6CWU7_9BACT)

HSP 1 Score: 123 bits (308), Expect = 3.130e-33
Identity = 63/132 (47.73%), Postives = 88/132 (66.67%), Query Frame = 1
Query:   40 IRRTFNLVKPISAEAASIFYPTLWELDPPTKELFRDTDMDKQGAKLMKILGLAVSSLDKMDKLVPILRNLGKRHVSYGVTAAMYPSVSEALLLTFDKGLGQECTSETKEAWSWVLEVISAICIDAAKEVNPS 435
            ++ ++N VKPIS +AA +FY  L+ELDP  + LF+  DM +QG KLM  L LAV SL K+D+++P ++ LG+RHV YGV    Y +V EALL T  +GLG+  T E KEAW+     +S + +DAA E  P+
Sbjct:    9 VQSSWNQVKPISEQAAELFYGRLFELDPSLRPLFKG-DMKEQGKKLMATLNLAVMSLTKLDEILPAVQELGRRHVKYGVPDESYKTVGEALLWTLQQGLGEGFTDEVKEAWTITYVTLSNVMLDAAHEDQPA 139          
BLAST of mRNA_H-elongata_contig6079.13616.1 vs. uniprot
Match: A0A5C6FKM8_9PLAN (Bacterial hemoglobin n=2 Tax=Crateriforma conspicua TaxID=2527996 RepID=A0A5C6FKM8_9PLAN)

HSP 1 Score: 122 bits (307), Expect = 3.830e-33
Identity = 62/128 (48.44%), Postives = 88/128 (68.75%), Query Frame = 1
Query:   40 IRRTFNLVKPISAEAASIFYPTLWELDPPTKELFRDTDMDKQGAKLMKILGLAVSSLDKMDKLVPILRNLGKRHVSYGVTAAMYPSVSEALLLTFDKGLGQECTSETKEAWSWVLEVISAICIDAAKE 423
            ++ ++  VKPIS +AA +FY  L+ELDP  K LF+  DM +QG KLM  L LAV+SL K+D L+P L++LG+RHV YGV    Y +V +ALL T ++GLG+  T++ KEAW+     +S + +DAA E
Sbjct:    9 VQSSWEQVKPISEQAAELFYGKLFELDPSLKPLFKG-DMKEQGKKLMATLSLAVASLTKLDSLLPALKDLGRRHVEYGVPDQSYQTVGQALLWTLEQGLGEAFTADVKEAWTETYVTLSTVMLDAAHE 135          
BLAST of mRNA_H-elongata_contig6079.13616.1 vs. uniprot
Match: A0A5C4SH89_9FLAO (Hemin receptor n=1 Tax=Tamlana fucoidanivorans TaxID=2583814 RepID=A0A5C4SH89_9FLAO)

HSP 1 Score: 122 bits (305), Expect = 7.470e-33
Identity = 64/128 (50.00%), Postives = 88/128 (68.75%), Query Frame = 1
Query:   40 IRRTFNLVKPISAEAASIFYPTLWELDPPTKELFRDTD--MDKQGAKLMKILGLAVSSLDKMDKLVPILRNLGKRHVSYGVTAAMYPSVSEALLLTFDKGLGQECTSETKEAWSWVLEVISAICIDAA 417
            ++ +F  VKPI+  AA IFY  L+ELDP  K LF +++  M  QG KLM +LG AV+ L+ +D L+P+L++LGKRHV Y V A  Y +V EALL T + GLG + TSE KEAW+ V   +S++ I+AA
Sbjct:    9 VQESFEKVKPIAPAAAEIFYSKLFELDPQLKPLFPNSEEAMKVQGNKLMSMLGAAVAGLNNLDALIPVLKDLGKRHVEYKVEAFHYDTVGEALLGTLEAGLGDDFTSEVKEAWASVYGTMSSVMIEAA 136          
BLAST of mRNA_H-elongata_contig6079.13616.1 vs. uniprot
Match: UPI00146AFC23 (globin domain-containing protein n=1 Tax=Flavivirga algicola TaxID=2729136 RepID=UPI00146AFC23)

HSP 1 Score: 121 bits (303), Expect = 1.500e-32
Identity = 64/128 (50.00%), Postives = 86/128 (67.19%), Query Frame = 1
Query:   40 IRRTFNLVKPISAEAASIFYPTLWELDPPTKELFRDTD--MDKQGAKLMKILGLAVSSLDKMDKLVPILRNLGKRHVSYGVTAAMYPSVSEALLLTFDKGLGQECTSETKEAWSWVLEVISAICIDAA 417
            ++ +F  VKPI+  AA IFY  L++LDP  K LF ++D  M +QG KLM +LG AV+ L  +D L+PIL++LGKRHV Y V A  Y +V EALL T + GLG + T + KEAW+ V   +S + IDAA
Sbjct:    9 VQESFEKVKPIAPTAAKIFYEKLFDLDPQLKPLFPNSDDAMKEQGNKLMSMLGAAVAGLSNLDSLIPILKDLGKRHVEYKVEAFHYDTVGEALLGTLEVGLGDDFTPDVKEAWTTVYGTMSNVMIDAA 136          
BLAST of mRNA_H-elongata_contig6079.13616.1 vs. uniprot
Match: A0A4Q9FS97_9FLAO (Hemin receptor n=1 Tax=Hyunsoonleella pacifica TaxID=1080224 RepID=A0A4Q9FS97_9FLAO)

HSP 1 Score: 120 bits (301), Expect = 3.010e-32
Identity = 65/128 (50.78%), Postives = 85/128 (66.41%), Query Frame = 1
Query:   40 IRRTFNLVKPISAEAASIFYPTLWELDPPTKELFRDTD--MDKQGAKLMKILGLAVSSLDKMDKLVPILRNLGKRHVSYGVTAAMYPSVSEALLLTFDKGLGQECTSETKEAWSWVLEVISAICIDAA 417
            ++ +F  VKPI+ +AA IFY  L+ELDP  K LF  +D  M  QG KLM +L  AV+ L+ +D LVP+L+NLGKRHV Y V A+ Y +V  ALL T + GLG E T E K AW+ V  V+S + I+AA
Sbjct:    9 VQESFEKVKPIAPQAAEIFYAKLFELDPKLKPLFPSSDDAMKTQGNKLMSMLAAAVAGLNNLDALVPVLQNLGKRHVDYNVEASHYHTVGAALLGTLEAGLGDEFTPEVKTAWTDVYGVMSNVMIEAA 136          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6079.13616.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G782_ECTSI1.390e-6468.06Globin n=1 Tax=Ectocarpus siliculosus TaxID=2880 R... [more]
D7FYD1_ECTSI1.460e-5664.18GLOBIN domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A5C6AX78_9BACT1.580e-3549.24Flavohemoprotein n=1 Tax=Rhodopirellula pilleata T... [more]
A0A1B4V7H3_9GAMM3.670e-3551.16Hemin receptor n=1 Tax=Sulfurifustis variabilis Ta... [more]
UPI00168529842.620e-3351.13globin domain-containing protein n=1 Tax=Spongiiba... [more]
A0A5M6CWU7_9BACT3.130e-3347.73Hemin receptor n=1 Tax=Roseiconus nitratireducens ... [more]
A0A5C6FKM8_9PLAN3.830e-3348.44Bacterial hemoglobin n=2 Tax=Crateriforma conspicu... [more]
A0A5C4SH89_9FLAO7.470e-3350.00Hemin receptor n=1 Tax=Tamlana fucoidanivorans Tax... [more]
UPI00146AFC231.500e-3250.00globin domain-containing protein n=1 Tax=Flavivirg... [more]
A0A4Q9FS97_9FLAO3.010e-3250.78Hemin receptor n=1 Tax=Hyunsoonleella pacifica Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6079contigH-elongata_contig6079:8716..9422 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score115.2
Seed ortholog evalue2.7e-23
Seed eggNOG ortholog620914.JH621256_gene1202
KEGG koko:K05916
KEGG Pathwayko05132,map05132
EggNOG free text desc.Globin
EggNOG OGs1I7HW@117743,2YKVA@290174,4NS54@976,COG1017@1,COG1017@2
EC1.14.12.17
COG Functional cat.C
Best tax levelAquimarina
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGlobin
Ec32 orthologEc-09_001270.1
Exons2
Model size441
Cds size441
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930982.2194707-CDS-H-elongata_contig6079:8715..90241622930982.2194707-CDS-H-elongata_contig6079:8715..9024Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6079 8716..9024 -
1691679649.9076104-CDS-H-elongata_contig6079:8715..90241691679649.9076104-CDS-H-elongata_contig6079:8715..9024Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6079 8716..9024 -
1622930982.2322547-CDS-H-elongata_contig6079:9290..94221622930982.2322547-CDS-H-elongata_contig6079:9290..9422Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6079 9291..9422 -
1691679649.9194007-CDS-H-elongata_contig6079:9290..94221691679649.9194007-CDS-H-elongata_contig6079:9290..9422Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6079 9291..9422 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6079.13616.1prot_H-elongata_contig6079.13616.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6079 8716..9422 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6079.13616.1

>prot_H-elongata_contig6079.13616.1 ID=prot_H-elongata_contig6079.13616.1|Name=mRNA_H-elongata_contig6079.13616.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=147bp
SEAVKDVEAYKAEIRRTFNLVKPISAEAASIFYPTLWELDPPTKELFRDT
DMDKQGAKLMKILGLAVSSLDKMDKLVPILRNLGKRHVSYGVTAAMYPSV
SEALLLTFDKGLGQECTSETKEAWSWVLEVISAICIDAAKEVNPSY*
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mRNA from alignment at H-elongata_contig6079:8716..9422-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6079.13616.1 ID=mRNA_H-elongata_contig6079.13616.1|Name=mRNA_H-elongata_contig6079.13616.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=707bp|location=Sequence derived from alignment at H-elongata_contig6079:8716..9422- (Himanthalia elongata Himel1 dioecious)
AGTGAGGCTGTGAAGGATGTCGAGGCCTACAAGGCCGAGATCAGGAGAAC TTTCAACCTCGTCAAGCCTATTTCGGCGGAAGCGGCATCCATCTTCTACC CTACCCTGTGGGAGCTAGATCCCCCCACTAAGGTTAGCATGGAGAGGATA GACGCTAATTGTTGATTAAGTTGGGCGCGAATGCCGGCGCTAAACCGCTT GACTCCTTACGGTATAGTTTTGGAAGACGCACGGAGTGCGAGCATCTTAG AAACGTTCCGATGACTCTGGTGAACGAATTTTAGAATATTTGGACTTAGG CGGCGTAGGTTTCTCTATGCGCAAGCGTTCGTCTCTTCAATGCAGCCCCC GGTGCAAATTCGTGTGCGAAATTCGGTGTTCGCATTAATTTCGCACAGGA GCTGTTTAGGGACACTGATATGGACAAGCAAGGCGCCAAGCTCATGAAGA TCCTCGGCCTTGCCGTGAGCTCGCTCGACAAGATGGACAAGCTCGTTCCC ATCCTACGGAACCTCGGCAAGAGGCACGTCTCTTATGGCGTCACGGCCGC GATGTACCCGTCGGTCAGCGAGGCTCTCCTCTTGACCTTCGATAAGGGGC TTGGACAGGAATGCACATCGGAGACGAAGGAGGCATGGAGTTGGGTGTTG GAAGTTATCTCGGCCATCTGCATCGATGCTGCCAAAGAGGTGAATCCTTC TTACTAA
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Coding sequence (CDS) from alignment at H-elongata_contig6079:8716..9422-

>mRNA_H-elongata_contig6079.13616.1 ID=mRNA_H-elongata_contig6079.13616.1|Name=mRNA_H-elongata_contig6079.13616.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=882bp|location=Sequence derived from alignment at H-elongata_contig6079:8716..9422- (Himanthalia elongata Himel1 dioecious)
AGTGAGGCTGTGAAGGATGTCGAGGCCTACAAGGCCGAGATCAGGAGAAC
TTTCAACCTCGTCAAGCCTATTTCGGCGGAAGCGGCATCCATCTTCTACC
CTACCCTGTGGGAGCTAGATCCCCCCACTAAGAGTGAGGCTGTGAAGGAT
GTCGAGGCCTACAAGGCCGAGATCAGGAGAACTTTCAACCTCGTCAAGCC
TATTTCGGCGGAAGCGGCATCCATCTTCTACCCTACCCTGTGGGAGCTAG
ATCCCCCCACTAAGGAGCTGTTTAGGGACACTGATATGGACAAGCAAGGC
GCCAAGCTCATGAAGATCCTCGGCCTTGCCGTGAGCTCGCTCGACAAGAT
GGACAAGCTCGTTCCCATCCTACGGAACCTCGGCAAGAGGCACGTCTCTT
ATGGCGTCACGGCCGCGATGTACCCGTCGGTCAGCGAGGCTCTCCTCTTG
ACCTTCGATAAGGGGCTTGGACAGGAATGCACATCGGAGACGAAGGAGGC
ATGGAGTTGGGTGTTGGAAGTTATCTCGGCCATCTGCATCGATGCTGCCA
AAGAGGTGAATCCTTCTTACTAAGAGCTGTTTAGGGACACTGATATGGAC
AAGCAAGGCGCCAAGCTCATGAAGATCCTCGGCCTTGCCGTGAGCTCGCT
CGACAAGATGGACAAGCTCGTTCCCATCCTACGGAACCTCGGCAAGAGGC
ACGTCTCTTATGGCGTCACGGCCGCGATGTACCCGTCGGTCAGCGAGGCT
CTCCTCTTGACCTTCGATAAGGGGCTTGGACAGGAATGCACATCGGAGAC
GAAGGAGGCATGGAGTTGGGTGTTGGAAGTTATCTCGGCCATCTGCATCG
ATGCTGCCAAAGAGGTGAATCCTTCTTACTAA
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