mRNA_H-elongata_contig60286.13569.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60286.13569.1
Unique NamemRNA_H-elongata_contig60286.13569.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig60286.13569.1 vs. uniprot
Match: D8LLX9_ECTSI (Cilia- and flagella-associated protein 36 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLX9_ECTSI)

HSP 1 Score: 211 bits (538), Expect = 6.540e-63
Identity = 103/134 (76.87%), Postives = 117/134 (87.31%), Query Frame = 1
Query:   10 GPDEGVTDKDWLFEFLLSLLKSPQWDASVMGFIDENCAVFDTDEENKLSYTSLHRQFKDLVETLCFSSLAEVGVTVEDFVDVLEGSRLSQDISKSVYEQLIALDDFVTFKKLMVKRNVELELEAVRALKEQGLP 411
            G     +D +WLF+FLLS+ KSP WD +VMGFIDENCAVFDT+EENKLSYT+LHRQFKDLVETLC +SLAEVGV V DFVD LE SR SQDIS +VY+QL+ALDDFVTFKKLMVKRNVELELEAV AL++QG+P
Sbjct:    7 GGGRDASDTEWLFDFLLSVFKSPSWDLAVMGFIDENCAVFDTEEENKLSYTTLHRQFKDLVETLCANSLAEVGVAVGDFVDALEASRFSQDISTAVYQQLLALDDFVTFKKLMVKRNVELELEAVHALQKQGVP 140          
BLAST of mRNA_H-elongata_contig60286.13569.1 vs. uniprot
Match: A0A8K1CJL2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CJL2_PYTOL)

HSP 1 Score: 160 bits (405), Expect = 2.390e-45
Identity = 74/131 (56.49%), Postives = 103/131 (78.63%), Query Frame = 1
Query:   19 EGVTDK-DWLFEFLLSLLKSPQWDASVMGFIDENCAVFDTDEENKLSYTSLHRQFKDLVETLCFSSLAEVGVTVEDFVDVLEGSRLSQDISKSVYEQLIALDDFVTFKKLMVKRNVELELEAVRALKEQGL 408
            E  TD+ DW+F+++++L +SP W+  +M FIDENCA FDT EENK  YT LH QF+++VET+  S+LAE+G+T  DF ++ E +R + DIS  V  Q++A+DDFVTFKKLMVKRN+ELELEA++AL+E+ L
Sbjct:    2 EFTTDESDWVFDYVMTLFRSPAWEVPIMCFIDENCASFDTGEENKFIYTDLHAQFREVVETVLCSNLAEIGLTASDFAEICERARTASDISMEVVNQILAMDDFVTFKKLMVKRNLELELEAIKALREETL 132          
BLAST of mRNA_H-elongata_contig60286.13569.1 vs. uniprot
Match: K3XC66_GLOUD (Cilia- and flagella-associated protein 36 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XC66_GLOUD)

HSP 1 Score: 157 bits (396), Expect = 6.880e-44
Identity = 69/126 (54.76%), Postives = 99/126 (78.57%), Query Frame = 1
Query:   31 DKDWLFEFLLSLLKSPQWDASVMGFIDENCAVFDTDEENKLSYTSLHRQFKDLVETLCFSSLAEVGVTVEDFVDVLEGSRLSQDISKSVYEQLIALDDFVTFKKLMVKRNVELELEAVRALKEQGL 408
            + DW+F++++++ +SP W+  +M FIDENCA FDT +ENK  YT LH+QF+D+VE +  SSLAE+G+T  DF ++ E SR   DIS  V  Q++A+DDF+TFKKLMVKRN+ELELEA++AL+E+ +
Sbjct:   10 ESDWVFDYVMNIFRSPAWEVPIMCFIDENCASFDTGDENKFVYTDLHQQFRDVVEGVLGSSLAEIGITSSDFAEICERSRSVSDISMEVVNQILAMDDFLTFKKLMVKRNLELELEAIKALREEAI 135          
BLAST of mRNA_H-elongata_contig60286.13569.1 vs. uniprot
Match: A0A7S1G6Y0_9STRA (Cilia- and flagella-associated protein 36 (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G6Y0_9STRA)

HSP 1 Score: 153 bits (386), Expect = 2.020e-43
Identity = 65/126 (51.59%), Postives = 100/126 (79.37%), Query Frame = 1
Query:   28 TDKDWLFEFLLSLLKSPQWDASVMGFIDENCAVFDTDEENKLSYTSLHRQFKDLVETLCFSSLAEVGVTVEDFVDVLEGSRLSQDISKSVYEQLIALDDFVTFKKLMVKRNVELELEAVRALKEQG 405
            T+ DWLF++++++ K+P W+  +M FID+NC VFD D+ENK +Y+ LH +FK+LV+TL  + L E+GV  EDFV++   +R  +D+++ V++Q++A+DDF+TFKKLM KRN+ELELEAV+ALK + 
Sbjct:   12 TEHDWLFDYIMNVFKAPTWEVPIMSFIDDNCVVFDNDDENKFAYSELHDKFKELVDTLLETHLTEIGVAPEDFVEICSQARDGRDVNRMVFDQIMAVDDFMTFKKLMQKRNMELELEAVKALKSRA 137          
BLAST of mRNA_H-elongata_contig60286.13569.1 vs. uniprot
Match: A0A6S9FTJ7_HETAK (Cilia- and flagella-associated protein 36 (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9FTJ7_HETAK)

HSP 1 Score: 151 bits (381), Expect = 4.180e-43
Identity = 68/131 (51.91%), Postives = 100/131 (76.34%), Query Frame = 1
Query:   19 EGVTDKDWLFEFLLSLLKSPQWDASVMGFIDENCAVFDTDEENKLSYTSLHRQFKDLVETLCFSSLAEVGVTVEDFVDVLEGSRLSQDISKSVYEQLIALDDFVTFKKLMVKRNVELELEAVRALKEQGLP 411
            E   + DW+F++++S+ KSP WD +VMG ID+NC VF  +EEN+  YT +H  FK  VE L    LAE+GV+ + F++  E +R S+DI++ VY+Q++A++DF+TFKKLMVKRN+ELELEAVR L+++G+P
Sbjct:    6 ESFGEYDWIFDYVMSVFKSPLWDLTVMGIIDDNCIVFSNEEENRFEYTDIHNLFKLQVEQLLTQHLAELGVSEDMFLEACERARSSRDINQEVYDQIVAMEDFLTFKKLMVKRNMELELEAVRELQKEGVP 136          
BLAST of mRNA_H-elongata_contig60286.13569.1 vs. uniprot
Match: A0A5D6XY03_9STRA (Cilia- and flagella-associated protein 36 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XY03_9STRA)

HSP 1 Score: 155 bits (391), Expect = 4.850e-43
Identity = 68/126 (53.97%), Postives = 98/126 (77.78%), Query Frame = 1
Query:   31 DKDWLFEFLLSLLKSPQWDASVMGFIDENCAVFDTDEENKLSYTSLHRQFKDLVETLCFSSLAEVGVTVEDFVDVLEGSRLSQDISKSVYEQLIALDDFVTFKKLMVKRNVELELEAVRALKEQGL 408
            + DW+F++++++ +SP W+  +M FIDENCA FDT +ENK  YT LH+QF+ +VE +  SSLAE+G++  DF D+ E  R S DIS  V  Q++A+DDF+TFKKLM+KRN+ELELEA++AL+E+ L
Sbjct:   10 ESDWVFDYVMNIFRSPAWEVPIMCFIDENCASFDTSDENKFVYTELHQQFRQVVEEVLGSSLAEIGISPSDFADICERGRHSSDISMEVVHQVLAMDDFLTFKKLMIKRNLELELEAIKALREETL 135          
BLAST of mRNA_H-elongata_contig60286.13569.1 vs. uniprot
Match: A0A6G0WLL1_9STRA (Cilia- and flagella-associated protein 36 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WLL1_9STRA)

HSP 1 Score: 152 bits (383), Expect = 3.150e-42
Identity = 66/128 (51.56%), Postives = 96/128 (75.00%), Query Frame = 1
Query:   16 DEGVTDKDWLFEFLLSLLKSPQWDASVMGFIDENCAVFDTDEENKLSYTSLHRQFKDLVETLCFSSLAEVGVTVEDFVDVLEGSRLSQDISKSVYEQLIALDDFVTFKKLMVKRNVELELEAVRALKE 399
            D    D +W+F+F+++L +SP W+  +MGFID+NCA FDTD+ENK  YT LH QF+D V+ +  ++LAE+G+T  DF D+    R S D+S +V  Q++A+DDF+TFKKLMVKRN+EL+LE + A++E
Sbjct:    3 DLAQRDSEWVFDFVMNLFQSPAWEVPIMGFIDDNCASFDTDDENKFIYTDLHSQFRDTVDGVLTANLAEIGITASDFADICTKCRHSTDVSMAVINQILAIDDFLTFKKLMVKRNLELDLEVITAVRE 130          
BLAST of mRNA_H-elongata_contig60286.13569.1 vs. uniprot
Match: A0A1V9ZWG9_9STRA (Cilia- and flagella-associated protein 36 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZWG9_9STRA)

HSP 1 Score: 154 bits (390), Expect = 3.460e-42
Identity = 68/127 (53.54%), Postives = 99/127 (77.95%), Query Frame = 1
Query:   22 GVTDKDWLFEFLLSLLKSPQWDASVMGFIDENCAVFDTDEENKLSYTSLHRQFKDLVETLCFSSLAEVGVTVEDFVDVLEGSRLSQDISKSVYEQLIALDDFVTFKKLMVKRNVELELEAVRALKEQ 402
            G+ D +W+F+F+++L +SP W+  +M FIDENCA FDTDEENK  Y+ LH+QF+D+V+ +  ++LAE+G+T  DF D+    R S +IS +V  Q++A+DDFVTFKKLMVKRN+ELELE + A+++Q
Sbjct:   97 GIADSEWVFDFVMNLFQSPAWEVPIMCFIDENCASFDTDEENKFIYSDLHQQFRDVVDGVLTANLAEIGITPTDFADICVQCRNSTEISMAVINQILAIDDFVTFKKLMVKRNLELELEVITAVRDQ 223          
BLAST of mRNA_H-elongata_contig60286.13569.1 vs. uniprot
Match: A0A2D4BMY6_PYTIN (Cilia- and flagella-associated protein 36 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BMY6_PYTIN)

HSP 1 Score: 151 bits (381), Expect = 9.360e-42
Identity = 67/129 (51.94%), Postives = 96/129 (74.42%), Query Frame = 1
Query:   16 DEGVTDKDWLFEFLLSLLKSPQWDASVMGFIDENCAVFDTDEENKLSYTSLHRQFKDLVETLCFSSLAEVGVTVEDFVDVLEGSRLSQDISKSVYEQLIALDDFVTFKKLMVKRNVELELEAVRALKEQ 402
            D    + DW+F++++ L +SP W+  +M FIDENCA FDT +ENK  YT LH QF+D+VE +   +LAE+G+T  DF ++ E  R S DIS  V  Q++A+DDF+TFKKLMVKRN+ELELEA++A++++
Sbjct:    5 DFSSDESDWVFDYVMHLFRSPAWEVPIMCFIDENCASFDTGDENKFVYTDLHXQFRDVVEGVLCDNLAEIGLTAADFAEICERGRYSTDISLEVVNQILAMDDFLTFKKLMVKRNLELELEAIKAMRDE 133          
BLAST of mRNA_H-elongata_contig60286.13569.1 vs. uniprot
Match: T0R0R9_SAPDV (Cilia- and flagella-associated protein 36 n=2 Tax=Saprolegnia TaxID=4769 RepID=T0R0R9_SAPDV)

HSP 1 Score: 150 bits (380), Expect = 2.090e-41
Identity = 65/124 (52.42%), Postives = 97/124 (78.23%), Query Frame = 1
Query:   31 DKDWLFEFLLSLLKSPQWDASVMGFIDENCAVFDTDEENKLSYTSLHRQFKDLVETLCFSSLAEVGVTVEDFVDVLEGSRLSQDISKSVYEQLIALDDFVTFKKLMVKRNVELELEAVRALKEQ 402
            D +W+F+F+++L +SP W+  +M FIDENCA FDTD+ENK  YT LH+QF+D+V+ +  ++LAE+G++  DF D+    R S +IS +V  Q++A+DDF+TFKKLMVKRN+ELELE + A+++Q
Sbjct:    8 DSEWVFDFIMNLFQSPAWEVPIMSFIDENCASFDTDDENKFIYTDLHQQFRDVVDGVLTANLAEIGISAADFADICVQCRNSTEISMAVVNQILAIDDFLTFKKLMVKRNLELELEVITAVRDQ 131          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60286.13569.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLX9_ECTSI6.540e-6376.87Cilia- and flagella-associated protein 36 n=1 Tax=... [more]
A0A8K1CJL2_PYTOL2.390e-4556.49Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3XC66_GLOUD6.880e-4454.76Cilia- and flagella-associated protein 36 n=1 Tax=... [more]
A0A7S1G6Y0_9STRA2.020e-4351.59Cilia- and flagella-associated protein 36 (Fragmen... [more]
A0A6S9FTJ7_HETAK4.180e-4351.91Cilia- and flagella-associated protein 36 (Fragmen... [more]
A0A5D6XY03_9STRA4.850e-4353.97Cilia- and flagella-associated protein 36 n=1 Tax=... [more]
A0A6G0WLL1_9STRA3.150e-4251.56Cilia- and flagella-associated protein 36 n=1 Tax=... [more]
A0A1V9ZWG9_9STRA3.460e-4253.54Cilia- and flagella-associated protein 36 n=1 Tax=... [more]
A0A2D4BMY6_PYTIN9.360e-4251.94Cilia- and flagella-associated protein 36 n=1 Tax=... [more]
T0R0R9_SAPDV2.090e-4152.42Cilia- and flagella-associated protein 36 n=2 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60286contigH-elongata_contig60286:586..1607 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score215.7
Seed ortholog evalue1.3e-53
Seed eggNOG ortholog2880.D8LLX9
Preferred nameCFAP36
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0032838,GO:0035869,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0047485,GO:0060271,GO:0070925,GO:0071840,GO:0097014,GO:0097546,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038
EggNOG free text desc.protein N-terminus binding
EggNOG OGsKOG4511@1,KOG4511@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size411
Cds size411
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60286.13569.1prot_H-elongata_contig60286.13569.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60286 586..1607 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930977.3260596-CDS-H-elongata_contig60286:585..6481622930977.3260596-CDS-H-elongata_contig60286:585..648Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60286 586..648 -
1691679648.108208-CDS-H-elongata_contig60286:585..6481691679648.108208-CDS-H-elongata_contig60286:585..648Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60286 586..648 -
1622930977.344988-CDS-H-elongata_contig60286:1039..11981622930977.344988-CDS-H-elongata_contig60286:1039..1198Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60286 1040..1198 -
1691679648.1198115-CDS-H-elongata_contig60286:1039..11981691679648.1198115-CDS-H-elongata_contig60286:1039..1198Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60286 1040..1198 -
1622930977.3609977-CDS-H-elongata_contig60286:1418..16071622930977.3609977-CDS-H-elongata_contig60286:1418..1607Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60286 1419..1607 -
1691679648.1304379-CDS-H-elongata_contig60286:1418..16071691679648.1304379-CDS-H-elongata_contig60286:1418..1607Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60286 1419..1607 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60286.13569.1

>prot_H-elongata_contig60286.13569.1 ID=prot_H-elongata_contig60286.13569.1|Name=mRNA_H-elongata_contig60286.13569.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=137bp
MNYGPDEGVTDKDWLFEFLLSLLKSPQWDASVMGFIDENCAVFDTDEENK
LSYTSLHRQFKDLVETLCFSSLAEVGVTVEDFVDVLEGSRLSQDISKSVY
EQLIALDDFVTFKKLMVKRNVELELEAVRALKEQGLP
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mRNA from alignment at H-elongata_contig60286:586..1607-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60286.13569.1 ID=mRNA_H-elongata_contig60286.13569.1|Name=mRNA_H-elongata_contig60286.13569.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1022bp|location=Sequence derived from alignment at H-elongata_contig60286:586..1607- (Himanthalia elongata Himel1 dioecious)
ATGAACTATGGCCCTGATGAAGGTGTCACCGACAAGGACTGGTTATTCGA GTTTCTTCTTAGCCTGTTGAAATCTCCGCAATGGGACGCCTCGGTGATGG GATTCATCGATGAAAACTGTGCGGTATTCGACACCGACGAAGAGAACAAG CTGTCTTACACGTCACTACATCGCCAGTTCAAGGACCTGGTGCGAGTCTC ATTGGTGTCGAAATATGCTGTGCGGGCGACGACGGCGTTGTAAGTTCTAA GGACATTGAAACTAATCGCATGGTACCACCCTTCACGCTTCTTGCTGTGA GCCGTCCTACTCGAATCACCAGGCCAGGTATAGCTATACTTAAAACCATG GTTTTTATTGCGTGATGCCGACGCGCGGATCTCATCCTAACTTATCACAA CGAACGCAGGTAGAAACTTTGTGCTTCAGCAGCCTCGCCGAGGTTGGGGT TACCGTTGAGGATTTTGTTGATGTCCTAGAAGGGTCGAGGCTAAGCCAGG ATATCAGCAAATCGGTGTACGAGCAGCTGATCGCACTGGATGACTTCGTC ACGTTTAAGAAGCTGATGGTGCGCCCCTTAAGACTCGAAACGTGCAGACA CCATACATGAGGTCGTGAAGACCTGCTCCAGGACGATGTGATTATACTTA GTTGCAGTAGATCCCCAACGCAAGAAACCTACGATGGCGACAGCCGACCG TACCGACGCCTCGTGGGTTACCTACCCAACATGCCGTGAGCAGCAAGCTC GCAGGCACCCAAGTTTTTGTCTACAATGATGGGGGCCTTGGTGAACCCAC GATATATTGTGACGGGGACAGTTTCAGAGCGTGAGCCTCAGTGCCAGATT TATAAACCTTCAATCACTCCCGAATACAACCCGCTCCATGTCCACACGAG GAGGAGCACATTGAAACGAGAATATACTATTTTTATGTTTGAAATACTTC GTTCGCCAGGTGAAGCGGAACGTTGAGTTGGAGCTCGAGGCGGTTCGAGC TTTGAAAGAGCAGGGATTGCCT
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Coding sequence (CDS) from alignment at H-elongata_contig60286:586..1607-

>mRNA_H-elongata_contig60286.13569.1 ID=mRNA_H-elongata_contig60286.13569.1|Name=mRNA_H-elongata_contig60286.13569.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=822bp|location=Sequence derived from alignment at H-elongata_contig60286:586..1607- (Himanthalia elongata Himel1 dioecious)
ATGAACTATGGCCCTGATGAAGGTGTCACCGACAAGGACTGGTTATTCGA
GTTTCTTCTTAGCCTGTTGAAATCTCCGCAATGGGACGCCTCGGTGATGG
GATTCATCGATGAAAACTGTGCGGTATTCGACACCGACGAAGAGAACAAG
CTGTCTTACACGTCACTACATCGCCAGTTCAAGGACCTGATGAACTATGG
CCCTGATGAAGGTGTCACCGACAAGGACTGGTTATTCGAGTTTCTTCTTA
GCCTGTTGAAATCTCCGCAATGGGACGCCTCGGTGATGGGATTCATCGAT
GAAAACTGTGCGGTATTCGACACCGACGAAGAGAACAAGCTGTCTTACAC
GTCACTACATCGCCAGTTCAAGGACCTGGTAGAAACTTTGTGCTTCAGCA
GCCTCGCCGAGGTTGGGGTTACCGTTGAGGATTTTGTTGATGTCCTAGAA
GGGTCGAGGCTAAGCCAGGATATCAGCAAATCGGTGTACGAGCAGCTGAT
CGCACTGGATGACTTCGTCACGTTTAAGAAGCTGATGGTAGAAACTTTGT
GCTTCAGCAGCCTCGCCGAGGTTGGGGTTACCGTTGAGGATTTTGTTGAT
GTCCTAGAAGGGTCGAGGCTAAGCCAGGATATCAGCAAATCGGTGTACGA
GCAGCTGATCGCACTGGATGACTTCGTCACGTTTAAGAAGCTGATGGTGA
AGCGGAACGTTGAGTTGGAGCTCGAGGCGGTTCGAGCTTTGAAAGAGCAG
GGATTGCCTGTGAAGCGGAACGTTGAGTTGGAGCTCGAGGCGGTTCGAGC
TTTGAAAGAGCAGGGATTGCCT
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