mRNA_H-elongata_contig60171.13552.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60171.13552.1
Unique NamemRNA_H-elongata_contig60171.13552.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig60171.13552.1 vs. uniprot
Match: A0A6G0JS79_9STRA (V-type proton ATPase proteolipid subunit (Fragment) n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6G0JS79_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.000e-23
Identity = 52/63 (82.54%), Postives = 54/63 (85.71%), Query Frame = 1 
Query:    1 CPCSGLAAGMAIGIVGDAGVRAIGQQEKLFVGMILILIFAEALGLYGLIVALILSQASFSCES 189
            C  SGL AGMAIG+VGDAGVRA+GQQEKLFV MILILIFAEALGLYGLIVALILSQ    C S
Sbjct:   53 CGLSGLTAGMAIGVVGDAGVRAVGQQEKLFVNMILILIFAEALGLYGLIVALILSQKKSDCPS 115
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BLAST of mRNA_H-elongata_contig60171.13552.1 vs. uniprot
Match: A0A7S2WSL7_9STRA (V-type proton ATPase proteolipid subunit n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WSL7_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.070e-22
Identity = 52/63 (82.54%), Postives = 56/63 (88.89%), Query Frame = 1 
Query:    1 CPCSGLAAGMAIGIVGDAGVRAIGQQEKLFVGMILILIFAEALGLYGLIVALILSQASFSCES 189
            C  S LAAG AIGIVGD GVRA+G+QEKLFVGMILILIFAEALGLYGLIVALILSQ+ F+C S
Sbjct:  113 CGLSCLAAGTAIGIVGDTGVRAVGRQEKLFVGMILILIFAEALGLYGLIVALILSQSGFTCGS 175
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BLAST of mRNA_H-elongata_contig60171.13552.1 vs. uniprot
Match: A0A7S0GWL4_9EUKA (V-type proton ATPase proteolipid subunit n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0GWL4_9EUKA)

HSP 1 Score: 92.4 bits (228), Expect = 3.200e-22
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 1 
Query:    1 CPCSGLAAGMAIGIVGDAGVRAIGQQEKLFVGMILILIFAEALGLYGLIVALILSQASFSC 183
            C  SGLAA MAIGIVGDAGVRA  QQEKLFVGMILILIFAEALGLYGLIVALILSQ+S +C
Sbjct:  103 CGLSGLAAXMAIGIVGDAGVRANAQQEKLFVGMILILIFAEALGLYGLIVALILSQSSENC 163
[Close]
BLAST of mRNA_H-elongata_contig60171.13552.1 vs. uniprot
Match: A0A6A3X4R3_9STRA (V-type proton ATPase proteolipid subunit n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3X4R3_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 4.570e-22
Identity = 50/63 (79.37%), Postives = 52/63 (82.54%), Query Frame = 1 
Query:    1 CPCSGLAAGMAIGIVGDAGVRAIGQQEKLFVGMILILIFAEALGLYGLIVALILSQASFSCES 189
            C  SGL AGMAIG+VGDAGVRA+GQ EKLFV MILILIF EALGLYGLIVALILSQ    C S
Sbjct:   78 CGLSGLTAGMAIGVVGDAGVRAVGQHEKLFVNMILILIFTEALGLYGLIVALILSQKKSDCPS 140
[Close]
BLAST of mRNA_H-elongata_contig60171.13552.1 vs. uniprot
Match: A0A7S3ZCE4_9EUKA (V-type proton ATPase proteolipid subunit n=2 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3ZCE4_9EUKA)

HSP 1 Score: 91.7 bits (226), Expect = 8.580e-22
Identity = 50/63 (79.37%), Postives = 56/63 (88.89%), Query Frame = 1 
Query:    1 CPCSGLAAGMAIGIVGDAGVRAIGQQEKLFVGMILILIFAEALGLYGLIVALILSQASFSCES 189
            C  SGLAAG AIGIVGDAGVRA+GQ+  LFVG+ILILIFAEALGLYGLIVALILSQ+S +C +
Sbjct:  117 CGLSGLAAGFAIGIVGDAGVRAVGQEPNLFVGLILILIFAEALGLYGLIVALILSQSSQACTN 179
[Close]
BLAST of mRNA_H-elongata_contig60171.13552.1 vs. uniprot
Match: A0A6A3GCT7_9STRA (ATP-synt_C domain-containing protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GCT7_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 5.890e-21
Identity = 48/60 (80.00%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:   10 SGLAAGMAIGIVGDAGVRAIGQQEKLFVGMILILIFAEALGLYGLIVALILSQASFSCES 189
            +GL AGMAIG+VGDAGVRA+ QQEKLFV M LILIFAEALGLYGLIVALILSQ +  C S
Sbjct:   46 NGLTAGMAIGVVGDAGVRAVNQQEKLFVKMTLILIFAEALGLYGLIVALILSQKTSDCPS 105
[Close]
BLAST of mRNA_H-elongata_contig60171.13552.1 vs. uniprot
Match: A0A6A4AY99_9STRA (V-type proton ATPase proteolipid subunit (Fragment) n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4AY99_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 2.470e-20
Identity = 48/60 (80.00%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:   10 SGLAAGMAIGIVGDAGVRAIGQQEKLFVGMILILIFAEALGLYGLIVALILSQASFSCES 189
            +GL AGMAIG+VGDAGVRA+ QQEKLFV M LILIFAEALGLYGLIVALILSQ +  C S
Sbjct:  101 NGLTAGMAIGVVGDAGVRAVSQQEKLFVKMTLILIFAEALGLYGLIVALILSQKTSDCPS 160
[Close]
BLAST of mRNA_H-elongata_contig60171.13552.1 vs. uniprot
Match: A0A7S0F1I1_9CRYP (V-type proton ATPase proteolipid subunit n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0F1I1_9CRYP)

HSP 1 Score: 85.1 bits (209), Expect = 6.820e-20
Identity = 48/54 (88.89%), Postives = 50/54 (92.59%), Query Frame = 1 
Query:   10 SGLAAGMAIGIVGDAGVRAIGQQEKLFVGMILILIFAEALGLYGLIVALILSQA 171
            SGLAAGMAIGIVGDAGVRA  QQ KLFVGMILILIFAEALGLYGLIVALI+S +
Sbjct:   58 SGLAAGMAIGIVGDAGVRATAQQPKLFVGMILILIFAEALGLYGLIVALIMSSS 111
[Close]
BLAST of mRNA_H-elongata_contig60171.13552.1 vs. uniprot
Match: L1IA80_GUITC (V-type proton ATPase proteolipid subunit n=4 Tax=Cryptophyceae TaxID=3027 RepID=L1IA80_GUITC)

HSP 1 Score: 85.9 bits (211), Expect = 1.580e-19
Identity = 51/61 (83.61%), Postives = 53/61 (86.89%), Query Frame = 1 
Query:   10 SGLAAGMAIGIVGDAGVRAIGQQEKLFVGMILILIFAEALGLYGLIVALILSQASF-SCES 189
            SGLAAGMAIGIVGDAGVRA  QQ KLFVGMILILIFAEALGLYGLIVALI+S +   SC S
Sbjct:  120 SGLAAGMAIGIVGDAGVRATAQQPKLFVGMILILIFAEALGLYGLIVALIMSSSGGGSCPS 180
[Close]
BLAST of mRNA_H-elongata_contig60171.13552.1 vs. uniprot
Match: A0A1R2C938_9CILI (V-type proton ATPase proteolipid subunit n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2C938_9CILI)

HSP 1 Score: 84.7 bits (208), Expect = 2.310e-19
Identity = 47/56 (83.93%), Postives = 51/56 (91.07%), Query Frame = 1 
Query:    1 CPCSGLAAGMAIGIVGDAGVRAIGQQEKLFVGMILILIFAEALGLYGLIVALILSQ 168
            C  S LAAGMAIGIVGD+GVRA  QQ+K+FVGMILILIFAEALGLYGLI+ALILSQ
Sbjct:   98 CGLSSLAAGMAIGIVGDSGVRANAQQDKIFVGMILILIFAEALGLYGLIIALILSQ 153
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60171.13552.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6G0JS79_9STRA1.000e-2382.54V-type proton ATPase proteolipid subunit (Fragment... [more]
A0A7S2WSL7_9STRA1.070e-2282.54V-type proton ATPase proteolipid subunit n=1 Tax=E... [more]
A0A7S0GWL4_9EUKA3.200e-2286.89V-type proton ATPase proteolipid subunit n=1 Tax=A... [more]
A0A6A3X4R3_9STRA4.570e-2279.37V-type proton ATPase proteolipid subunit n=2 Tax=P... [more]
A0A7S3ZCE4_9EUKA8.580e-2279.37V-type proton ATPase proteolipid subunit n=2 Tax=L... [more]
A0A6A3GCT7_9STRA5.890e-2180.00ATP-synt_C domain-containing protein n=2 Tax=Phyto... [more]
A0A6A4AY99_9STRA2.470e-2080.00V-type proton ATPase proteolipid subunit (Fragment... [more]
A0A7S0F1I1_9CRYP6.820e-2088.89V-type proton ATPase proteolipid subunit n=1 Tax=H... [more]
L1IA80_GUITC1.580e-1983.61V-type proton ATPase proteolipid subunit n=4 Tax=C... [more]
A0A1R2C938_9CILI2.310e-1983.93V-type proton ATPase proteolipid subunit n=1 Tax=S... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60171contigH-elongata_contig60171:130..321 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.1
Seed ortholog evalue1.1e-14
Seed eggNOG ortholog227086.JGI_V11_52753
Preferred nameATP6V0C
KEGG koko:K02155,ko:K04345,ko:K15542
KEGG TC3.A.2.2
KEGG Pathwayko00190,ko01100,ko01522,ko03015,ko04010,ko04014,ko04020,ko04024,ko04062,ko04113,ko04114,ko04138,ko04140,ko04142,ko04145,ko04211,ko04213,ko04261,ko04270,ko04310,ko04340,ko04341,ko04371,ko04530,ko04540,ko04611,ko04713,ko04714,ko04720,ko04721,ko04723,ko04724,ko04725,ko04726,ko04727,ko04728,ko04740,ko04742,ko04750,ko04910,ko04911,ko04912,ko04913,ko04914,ko04915,ko04916,ko04918,ko04919,ko04921,ko04922,ko04923,ko04924,ko04925,ko04926,ko04927,ko04934,ko04961,ko04962,ko04966,ko04970,ko04971,ko04976,ko05012,ko05020,ko05030,ko05031,ko05032,ko05110,ko05120,ko05146,ko05152,ko05165,ko05166,ko05169,ko05200,ko05203,ko05205,ko05323,ko05414,map00190,map01100,map01522,map03015,map04010,map04014,map04020,map04024,map04062,map04113,map04114,map04138,map04140,map04142,map04145,map04211,map04213,map04261,map04270,map04310,map04340,map04341,map04371,map04530,map04540,map04611,map04713,map04714,map04720,map04721,map04723,map04724,map04725,map04726,map04727,map04728,map04740,map04742,map04750,map04910,map04911,map04912,map04913,map04914,map04915,map04916,map04918,map04919,map04921,map04922,map04923,map04924,map04925,map04926,map04927,map04934,map04961,map04962,map04966,map04970,map04971,map04976,map05012,map05020,map05030,map05031,map05032,map05110,map05120,map05146,map05152,map05165,map05166,map05169,map05200,map05203,map05205,map05323,map05414
KEGG ModuleM00160,M00695
GOsGO:0000003,GO:0000041,GO:0000220,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0000331,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005766,GO:0005768,GO:0005773,GO:0005774,GO:0005794,GO:0005886,GO:0006403,GO:0006605,GO:0006623,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006826,GO:0006873,GO:0006875,GO:0006878,GO:0006879,GO:0006885,GO:0006886,GO:0006887,GO:0006897,GO:0006955,GO:0006996,GO:0007033,GO:0007034,GO:0007035,GO:0007040,GO:0007042,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007276,GO:0007292,GO:0008104,GO:0008150,GO:0008286,GO:0008324,GO:0008553,GO:0009719,GO:0009725,GO:0009790,GO:0009792,GO:0009894,GO:0009966,GO:0009967,GO:0009987,GO:0010008,GO:0010033,GO:0010243,GO:0010506,GO:0010646,GO:0010647,GO:0010939,GO:0010940,GO:0010941,GO:0010942,GO:0012505,GO:0012506,GO:0015031,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015662,GO:0015672,GO:0015682,GO:0015833,GO:0015931,GO:0015988,GO:0015991,GO:0016020,GO:0016021,GO:0016043,GO:0016192,GO:0016241,GO:0016462,GO:0016469,GO:0016471,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0019725,GO:0019829,GO:0019899,GO:0019953,GO:0019954,GO:0022414,GO:0022603,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0023051,GO:0023052,GO:0023056,GO:0030001,GO:0030003,GO:0030004,GO:0030111,GO:0030139,GO:0030141,GO:0030177,GO:0030587,GO:0030641,GO:0030659,GO:0030666,GO:0030667,GO:0030670,GO:0030728,GO:0031090,GO:0031164,GO:0031224,GO:0031323,GO:0031329,GO:0031410,GO:0031625,GO:0031982,GO:0032501,GO:0032502,GO:0032504,GO:0032868,GO:0032869,GO:0032870,GO:0032940,GO:0032991,GO:0033036,GO:0033176,GO:0033177,GO:0033179,GO:0033181,GO:0033227,GO:0033365,GO:0033572,GO:0034220,GO:0034613,GO:0035577,GO:0035751,GO:0036230,GO:0036442,GO:0042119,GO:0042221,GO:0042582,GO:0042592,GO:0042623,GO:0042625,GO:0042626,GO:0042886,GO:0043067,GO:0043068,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043299,GO:0043312,GO:0043434,GO:0043492,GO:0044389,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044703,GO:0044769,GO:0045055,GO:0045169,GO:0045184,GO:0045321,GO:0045335,GO:0045851,GO:0046903,GO:0046907,GO:0046916,GO:0046933,GO:0046961,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048609,GO:0048856,GO:0048878,GO:0050657,GO:0050658,GO:0050789,GO:0050793,GO:0050794,GO:0050801,GO:0050896,GO:0051128,GO:0051179,GO:0051234,GO:0051236,GO:0051452,GO:0051453,GO:0051641,GO:0051649,GO:0051703,GO:0051704,GO:0051716,GO:0055065,GO:0055067,GO:0055070,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0055085,GO:0060142,GO:0065007,GO:0065008,GO:0070727,GO:0070820,GO:0070821,GO:0070838,GO:0070887,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072511,GO:0072512,GO:0072594,GO:0072665,GO:0072666,GO:0080171,GO:0090662,GO:0090702,GO:0097708,GO:0098588,GO:0098655,GO:0098657,GO:0098660,GO:0098662,GO:0098771,GO:0098796,GO:0098797,GO:0098805,GO:0098852,GO:0099120,GO:0099131,GO:0099132,GO:0099503,GO:0101002,GO:0101003,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902600
EggNOG free text desc.ATP hydrolysis coupled proton transport
EggNOG OGsCOG0636@1,KOG0232@2759
EC2.7.11.11
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03019,ko03036
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionV-ATPase proteolipid subunit C-like domain
Ec32 orthologEc-22_002820.1
Exons1
Model size192
Cds size165
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930975.3515916-UTR-H-elongata_contig60171:129..1561622930975.3515916-UTR-H-elongata_contig60171:129..156Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60171 130..156 +
1691679647.4738271-UTR-H-elongata_contig60171:129..1561691679647.4738271-UTR-H-elongata_contig60171:129..156Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60171 130..156 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930975.3722262-CDS-H-elongata_contig60171:156..3211622930975.3722262-CDS-H-elongata_contig60171:156..321Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60171 157..321 +
1691679647.4847565-CDS-H-elongata_contig60171:156..3211691679647.4847565-CDS-H-elongata_contig60171:156..321Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60171 157..321 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60171.13552.1prot_H-elongata_contig60171.13552.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60171 157..321 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60171.13552.1

>prot_H-elongata_contig60171.13552.1 ID=prot_H-elongata_contig60171.13552.1|Name=mRNA_H-elongata_contig60171.13552.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bp
MAIGIVGDAGVRAIGQQEKLFVGMILILIFAEALGLYGLIVALILSQASF
SCES*
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mRNA from alignment at H-elongata_contig60171:130..321+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60171.13552.1 ID=mRNA_H-elongata_contig60171.13552.1|Name=mRNA_H-elongata_contig60171.13552.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=192bp|location=Sequence derived from alignment at H-elongata_contig60171:130..321+ (Himanthalia elongata Himel1 dioecious)
TGTCCTTGCAGTGGTCTTGCCGCCGGCATGGCAATCGGTATCGTGGGAGA
CGCGGGCGTGCGAGCCATCGGTCAGCAAGAAAAGTTGTTCGTGGGGATGA
TCCTCATCCTCATTTTCGCGGAAGCCCTTGGACTGTACGGTCTAATCGTC
GCCCTGATTCTCTCGCAGGCTTCCTTTTCGTGCGAGTCTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig60171:130..321+

>mRNA_H-elongata_contig60171.13552.1 ID=mRNA_H-elongata_contig60171.13552.1|Name=mRNA_H-elongata_contig60171.13552.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at H-elongata_contig60171:130..321+ (Himanthalia elongata Himel1 dioecious)
ATGGCAATCGGTATCGTGGGAGACGCGGGCGTGCGAGCCATCGGTCAGCA
AGAAAAGTTGTTCGTGGGGATGATCCTCATCCTCATTTTCGCGGAAGCCC
TTGGACTGTACGGTCTAATCGTCGCCCTGATTCTCTCGCAGGCTTCCTTT
TCGTGCGAGTCTTGAATGGCAATCGGTATCGTGGGAGACGCGGGCGTGCG
AGCCATCGGTCAGCAAGAAAAGTTGTTCGTGGGGATGATCCTCATCCTCA
TTTTCGCGGAAGCCCTTGGACTGTACGGTCTAATCGTCGCCCTGATTCTC
TCGCAGGCTTCCTTTTCGTGCGAGTCTTGA
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