mRNA_H-elongata_contig59779.13494.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig59779.13494.1 vs. uniprot
Match: A0A6H5JUB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUB8_9PHAE) HSP 1 Score: 122 bits (305), Expect = 2.040e-29 Identity = 64/150 (42.67%), Postives = 100/150 (66.67%), Query Frame = 1
Query: 16 LEAKGFQRSQADPCVFRRILHGEVVDVIVVYVDDLLVASATKRDEEQAVRDLDSCFPIKDLGEASYYLGCHITRDRNARTLKFDQHQYIQTIHEDNEGAIKMTKNRFSSQRTRHVDIKHHIVHDAIEGGVVHVEYVRSGEQHADIFTKSV 465
L GF++ +ADPCVFR+++ VV +IV+YVDD+LVA + + D E+ + L+ FP K+LGE ++ GC I RD +A TL+ Q IQ + +DN+GAI + +N SS RT+H+D++ H + G + V++V + EQHAD+ TK++
Sbjct: 412 LVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQ-TAIQVL-KDNQGAIALVQNPLSSGRTKHIDVRFHFIRGLFRSGDISVKFVPTTEQHADLLTKAL 558
BLAST of mRNA_H-elongata_contig59779.13494.1 vs. uniprot
Match: A0A6H5LQZ7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQZ7_9PHAE) HSP 1 Score: 117 bits (293), Expect = 1.280e-27 Identity = 61/163 (37.42%), Postives = 99/163 (60.74%), Query Frame = 1
Query: 16 LEAKGFQRSQADPCVFRRILHGEVVDVIVVYVDDLLVASATKRDEEQAVRDLDSCFPIKDLGEASYYLGCHITRDRNARTLKFDQHQYIQTIH---------------EDNEGAIKMTKNRFSSQRTRHVDIKHHIVHDAIEGGVVHVEYVRSGEQHADIFTK 459
L A G+++ +ADPCVFRR++ EVV +IV+YVDD+L+ A++++ ++ + L FP+KDLGE ++Y G I D K Q YI +I EDN+GA+ + +N FSS ++H+D+++H + + + G + EYV + EQ+AD+ TK
Sbjct: 564 LIANGYEQCRADPCVFRRMVGAEVVGLIVIYVDDILLV-ASEQERQEVLASLQKKFPVKDLGECTWYDGIGIEMDLENGIAKLSQTAYIGSIIKWFNRLTSGAKIKVLEDNKGALALVQNPFSSATSKHIDVRYHFIRELFKSGKITAEYVPTEEQYADMLTK 725
BLAST of mRNA_H-elongata_contig59779.13494.1 vs. uniprot
Match: A0A6H5KHN5_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHN5_9PHAE) HSP 1 Score: 94.0 bits (232), Expect = 2.280e-19 Identity = 60/222 (27.03%), Postives = 102/222 (45.95%), Query Frame = 1
Query: 1 QIGIELEAKGFQRSQADPCVFRRILHGEVVDVIVVYVDDLLVASATKRDEEQAVRDLDSCFPIKDLG---------------------EASYYLGCHITRDRNARTLKFDQHQ------------------YIQ-----------------------------TIHEDNEGAIKMTKNRFSSQRTRHVDIKHHIVHDAIEGGVVHVEYVRSGEQHADIFTKS 462
++ L + G+++ + DPC+FR+++ GEVV +IV+YVDD+++ SAT+ + E+ + L FP+KDLG EA + + A T + D + Y++ T EDNEGA+ + +N FSS R++H+D++ H + + + G + +YV + EQHAD+ TKS
Sbjct: 1146 EVADALTSNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIML-SATEEEREELLASLQKRFPVKDLGDCTCGQAREGSDRMPDVVAVHEAGHRAAFEQAAEDRALTHREDVERACADHMSYLKETKDLGITYVRGSGLDLDVFVDSSYADSTVDRRSTTGLAVTGREDNEGALALVQNPFSSARSKHIDVRFHFIRELFKAGKITADYVSTEEQHADMLTKS 1366
BLAST of mRNA_H-elongata_contig59779.13494.1 vs. uniprot
Match: A0A6H5L296_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L296_9PHAE) HSP 1 Score: 84.7 bits (208), Expect = 5.830e-17 Identity = 41/88 (46.59%), Postives = 59/88 (67.05%), Query Frame = 1
Query: 28 GFQRSQADPCVFRRILHGEVVDVIVVYVDDLLVASATKRDEEQAVRDLDSCFPIKDLGEASYYLGCHITRDRNARTLKFDQHQYIQTI 291
GF++ + DPCVFR+++ GEVV +IV+YVDD+LVA A + D E+ L+ FP+KDLGE ++Y GC I D K Q YI+++
Sbjct: 34 GFEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVA-ADEGDREELFASLNKKFPVKDLGECTWYDGCAIAMDVENCITKLSQTAYIESM 120
BLAST of mRNA_H-elongata_contig59779.13494.1 vs. uniprot
Match: A0A6H5K9U4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9U4_9PHAE) HSP 1 Score: 86.3 bits (212), Expect = 1.010e-16 Identity = 50/172 (29.07%), Postives = 88/172 (51.16%), Query Frame = 1
Query: 31 FQRSQADPCVFRRILHGEVVDVIVVYVDDLLVASATKRDEEQAVRDLDSCFPIKDLGEASYYLGCHITRDRNARTLKFDQHQYIQT---------------------------IHEDNEGAIKMTKNRFSSQRTRHVDIKHHIVHDAIEGGVVHVEYVRSGEQHADIFTKSV 465
F + AD CVFR ++ G V+ +IVVYVDD+ +R +E RDL+ P+K+LGE S + +++ + R L + +Y+ + EDN+GAI++ N ++ ++H+D++HH + + +E + + +V S QHAD TK++
Sbjct: 594 FLQCLADACVFRLMVEGRVIMIIVVYVDDIFAVGQKERCDEFG-RDLNEMVPVKNLGELSVVDADYASKEADRR-LSTMEAEYVAIADVLKEVLFLRQVWRFMWPDASMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAI 763
BLAST of mRNA_H-elongata_contig59779.13494.1 vs. uniprot
Match: A0A6H5KCN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCN6_9PHAE) HSP 1 Score: 84.7 bits (208), Expect = 2.410e-16 Identity = 38/92 (41.30%), Postives = 63/92 (68.48%), Query Frame = 1
Query: 16 LEAKGFQRSQADPCVFRRILHGEVVDVIVVYVDDLLVASATKRDEEQAVRDLDSCFPIKDLGEASYYLGCHITRDRNARTLKFDQHQYIQTI 291
L + G+++ + DPC+FR+++ GEVV +IV+YVDD+++ SAT+ + E+ + L FP+KDLG+ ++Y GC I D T K Q YI+++
Sbjct: 70 LISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIML-SATEEEREELLASLQKRFPVKDLGDCTWYDGCAIEVDLENGTTKLSQTAYIESM 160
BLAST of mRNA_H-elongata_contig59779.13494.1 vs. uniprot
Match: A0A6H5KR39_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR39_9PHAE) HSP 1 Score: 84.7 bits (208), Expect = 3.420e-16 Identity = 38/92 (41.30%), Postives = 63/92 (68.48%), Query Frame = 1
Query: 16 LEAKGFQRSQADPCVFRRILHGEVVDVIVVYVDDLLVASATKRDEEQAVRDLDSCFPIKDLGEASYYLGCHITRDRNARTLKFDQHQYIQTI 291
L + G+++ + DPC+FR+++ GEVV +IV+YVDD+++ SAT+ + E+ + L FP+KDLG+ ++Y GC I D T K Q YI+++
Sbjct: 283 LISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIML-SATEEEREELLASLQKRFPVKDLGDCTWYDGCAIEVDLENGTTKLSQTAYIESM 373
BLAST of mRNA_H-elongata_contig59779.13494.1 vs. uniprot
Match: A0A6H5JHI8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI8_9PHAE) HSP 1 Score: 84.7 bits (208), Expect = 3.440e-16 Identity = 38/92 (41.30%), Postives = 63/92 (68.48%), Query Frame = 1
Query: 16 LEAKGFQRSQADPCVFRRILHGEVVDVIVVYVDDLLVASATKRDEEQAVRDLDSCFPIKDLGEASYYLGCHITRDRNARTLKFDQHQYIQTI 291
L + G+++ + DPC+FR+++ GEVV +IV+YVDD+++ SAT+ + E+ + L FP+KDLG+ ++Y GC I D T K Q YI+++
Sbjct: 539 LISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIML-SATEEEREELLASLQKRFPVKDLGDCTWYDGCAIEVDLENGTTKLSQTAYIESM 629
BLAST of mRNA_H-elongata_contig59779.13494.1 vs. uniprot
Match: A0A6H5L6D6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D6_9PHAE) HSP 1 Score: 84.7 bits (208), Expect = 3.490e-16 Identity = 38/92 (41.30%), Postives = 63/92 (68.48%), Query Frame = 1
Query: 16 LEAKGFQRSQADPCVFRRILHGEVVDVIVVYVDDLLVASATKRDEEQAVRDLDSCFPIKDLGEASYYLGCHITRDRNARTLKFDQHQYIQTI 291
L + G+++ + DPC+FR+++ GEVV +IV+YVDD+++ SAT+ + E+ + L FP+KDLG+ ++Y GC I D T K Q YI+++
Sbjct: 463 LISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIML-SATEEEREELLASLQKRFPVKDLGDCTWYDGCAIEVDLENGTTKLSQTAYIESM 553
BLAST of mRNA_H-elongata_contig59779.13494.1 vs. uniprot
Match: A0A6H5K9E2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9E2_9PHAE) HSP 1 Score: 84.7 bits (208), Expect = 3.600e-16 Identity = 38/92 (41.30%), Postives = 63/92 (68.48%), Query Frame = 1
Query: 16 LEAKGFQRSQADPCVFRRILHGEVVDVIVVYVDDLLVASATKRDEEQAVRDLDSCFPIKDLGEASYYLGCHITRDRNARTLKFDQHQYIQTI 291
L + G+++ + DPC+FR+++ GEVV +IV+YVDD+++ SAT+ + E+ + L FP+KDLG+ ++Y GC I D T K Q YI+++
Sbjct: 716 LISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIML-SATEEEREELLASLQKRFPVKDLGDCTWYDGCAIEVDLENGTTKLSQTAYIESM 806 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59779.13494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig59779.13494.1 >prot_H-elongata_contig59779.13494.1 ID=prot_H-elongata_contig59779.13494.1|Name=mRNA_H-elongata_contig59779.13494.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=155bp QIGIELEAKGFQRSQADPCVFRRILHGEVVDVIVVYVDDLLVASATKRDEback to top mRNA from alignment at H-elongata_contig59779:419..1443- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig59779.13494.1 ID=mRNA_H-elongata_contig59779.13494.1|Name=mRNA_H-elongata_contig59779.13494.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1025bp|location=Sequence derived from alignment at H-elongata_contig59779:419..1443- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig59779:419..1443- >mRNA_H-elongata_contig59779.13494.1 ID=mRNA_H-elongata_contig59779.13494.1|Name=mRNA_H-elongata_contig59779.13494.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=930bp|location=Sequence derived from alignment at H-elongata_contig59779:419..1443- (Himanthalia elongata Himel1 dioecious)back to top |