mRNA_H-elongata_contig59779.13494.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59779.13494.1
Unique NamemRNA_H-elongata_contig59779.13494.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig59779.13494.1 vs. uniprot
Match: A0A6H5JUB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUB8_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 2.040e-29
Identity = 64/150 (42.67%), Postives = 100/150 (66.67%), Query Frame = 1
Query:   16 LEAKGFQRSQADPCVFRRILHGEVVDVIVVYVDDLLVASATKRDEEQAVRDLDSCFPIKDLGEASYYLGCHITRDRNARTLKFDQHQYIQTIHEDNEGAIKMTKNRFSSQRTRHVDIKHHIVHDAIEGGVVHVEYVRSGEQHADIFTKSV 465
            L   GF++ +ADPCVFR+++   VV +IV+YVDD+LVA + + D E+ +  L+  FP K+LGE  ++ GC I RD +A TL+  Q   IQ + +DN+GAI + +N  SS RT+H+D++ H +      G + V++V + EQHAD+ TK++
Sbjct:  412 LVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQ-TAIQVL-KDNQGAIALVQNPLSSGRTKHIDVRFHFIRGLFRSGDISVKFVPTTEQHADLLTKAL 558          
BLAST of mRNA_H-elongata_contig59779.13494.1 vs. uniprot
Match: A0A6H5LQZ7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQZ7_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 1.280e-27
Identity = 61/163 (37.42%), Postives = 99/163 (60.74%), Query Frame = 1
Query:   16 LEAKGFQRSQADPCVFRRILHGEVVDVIVVYVDDLLVASATKRDEEQAVRDLDSCFPIKDLGEASYYLGCHITRDRNARTLKFDQHQYIQTIH---------------EDNEGAIKMTKNRFSSQRTRHVDIKHHIVHDAIEGGVVHVEYVRSGEQHADIFTK 459
            L A G+++ +ADPCVFRR++  EVV +IV+YVDD+L+  A++++ ++ +  L   FP+KDLGE ++Y G  I  D      K  Q  YI +I                EDN+GA+ + +N FSS  ++H+D+++H + +  + G +  EYV + EQ+AD+ TK
Sbjct:  564 LIANGYEQCRADPCVFRRMVGAEVVGLIVIYVDDILLV-ASEQERQEVLASLQKKFPVKDLGECTWYDGIGIEMDLENGIAKLSQTAYIGSIIKWFNRLTSGAKIKVLEDNKGALALVQNPFSSATSKHIDVRYHFIRELFKSGKITAEYVPTEEQYADMLTK 725          
BLAST of mRNA_H-elongata_contig59779.13494.1 vs. uniprot
Match: A0A6H5KHN5_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHN5_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 2.280e-19
Identity = 60/222 (27.03%), Postives = 102/222 (45.95%), Query Frame = 1
Query:    1 QIGIELEAKGFQRSQADPCVFRRILHGEVVDVIVVYVDDLLVASATKRDEEQAVRDLDSCFPIKDLG---------------------EASYYLGCHITRDRNARTLKFDQHQ------------------YIQ-----------------------------TIHEDNEGAIKMTKNRFSSQRTRHVDIKHHIVHDAIEGGVVHVEYVRSGEQHADIFTKS 462
            ++   L + G+++ + DPC+FR+++ GEVV +IV+YVDD+++ SAT+ + E+ +  L   FP+KDLG                     EA +        +  A T + D  +                  Y++                             T  EDNEGA+ + +N FSS R++H+D++ H + +  + G +  +YV + EQHAD+ TKS
Sbjct: 1146 EVADALTSNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIML-SATEEEREELLASLQKRFPVKDLGDCTCGQAREGSDRMPDVVAVHEAGHRAAFEQAAEDRALTHREDVERACADHMSYLKETKDLGITYVRGSGLDLDVFVDSSYADSTVDRRSTTGLAVTGREDNEGALALVQNPFSSARSKHIDVRFHFIRELFKAGKITADYVSTEEQHADMLTKS 1366          
BLAST of mRNA_H-elongata_contig59779.13494.1 vs. uniprot
Match: A0A6H5L296_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L296_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 5.830e-17
Identity = 41/88 (46.59%), Postives = 59/88 (67.05%), Query Frame = 1
Query:   28 GFQRSQADPCVFRRILHGEVVDVIVVYVDDLLVASATKRDEEQAVRDLDSCFPIKDLGEASYYLGCHITRDRNARTLKFDQHQYIQTI 291
            GF++ + DPCVFR+++ GEVV +IV+YVDD+LVA A + D E+    L+  FP+KDLGE ++Y GC I  D      K  Q  YI+++
Sbjct:   34 GFEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVA-ADEGDREELFASLNKKFPVKDLGECTWYDGCAIAMDVENCITKLSQTAYIESM 120          
BLAST of mRNA_H-elongata_contig59779.13494.1 vs. uniprot
Match: A0A6H5K9U4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9U4_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.010e-16
Identity = 50/172 (29.07%), Postives = 88/172 (51.16%), Query Frame = 1
Query:   31 FQRSQADPCVFRRILHGEVVDVIVVYVDDLLVASATKRDEEQAVRDLDSCFPIKDLGEASYYLGCHITRDRNARTLKFDQHQYIQT---------------------------IHEDNEGAIKMTKNRFSSQRTRHVDIKHHIVHDAIEGGVVHVEYVRSGEQHADIFTKSV 465
            F +  AD CVFR ++ G V+ +IVVYVDD+      +R +E   RDL+   P+K+LGE S     + +++ + R L   + +Y+                             + EDN+GAI++  N  ++  ++H+D++HH + + +E   + + +V S  QHAD  TK++
Sbjct:  594 FLQCLADACVFRLMVEGRVIMIIVVYVDDIFAVGQKERCDEFG-RDLNEMVPVKNLGELSVVDADYASKEADRR-LSTMEAEYVAIADVLKEVLFLRQVWRFMWPDASMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAI 763          
BLAST of mRNA_H-elongata_contig59779.13494.1 vs. uniprot
Match: A0A6H5KCN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCN6_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 2.410e-16
Identity = 38/92 (41.30%), Postives = 63/92 (68.48%), Query Frame = 1
Query:   16 LEAKGFQRSQADPCVFRRILHGEVVDVIVVYVDDLLVASATKRDEEQAVRDLDSCFPIKDLGEASYYLGCHITRDRNARTLKFDQHQYIQTI 291
            L + G+++ + DPC+FR+++ GEVV +IV+YVDD+++ SAT+ + E+ +  L   FP+KDLG+ ++Y GC I  D    T K  Q  YI+++
Sbjct:   70 LISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIML-SATEEEREELLASLQKRFPVKDLGDCTWYDGCAIEVDLENGTTKLSQTAYIESM 160          
BLAST of mRNA_H-elongata_contig59779.13494.1 vs. uniprot
Match: A0A6H5KR39_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR39_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 3.420e-16
Identity = 38/92 (41.30%), Postives = 63/92 (68.48%), Query Frame = 1
Query:   16 LEAKGFQRSQADPCVFRRILHGEVVDVIVVYVDDLLVASATKRDEEQAVRDLDSCFPIKDLGEASYYLGCHITRDRNARTLKFDQHQYIQTI 291
            L + G+++ + DPC+FR+++ GEVV +IV+YVDD+++ SAT+ + E+ +  L   FP+KDLG+ ++Y GC I  D    T K  Q  YI+++
Sbjct:  283 LISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIML-SATEEEREELLASLQKRFPVKDLGDCTWYDGCAIEVDLENGTTKLSQTAYIESM 373          
BLAST of mRNA_H-elongata_contig59779.13494.1 vs. uniprot
Match: A0A6H5JHI8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI8_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 3.440e-16
Identity = 38/92 (41.30%), Postives = 63/92 (68.48%), Query Frame = 1
Query:   16 LEAKGFQRSQADPCVFRRILHGEVVDVIVVYVDDLLVASATKRDEEQAVRDLDSCFPIKDLGEASYYLGCHITRDRNARTLKFDQHQYIQTI 291
            L + G+++ + DPC+FR+++ GEVV +IV+YVDD+++ SAT+ + E+ +  L   FP+KDLG+ ++Y GC I  D    T K  Q  YI+++
Sbjct:  539 LISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIML-SATEEEREELLASLQKRFPVKDLGDCTWYDGCAIEVDLENGTTKLSQTAYIESM 629          
BLAST of mRNA_H-elongata_contig59779.13494.1 vs. uniprot
Match: A0A6H5L6D6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D6_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 3.490e-16
Identity = 38/92 (41.30%), Postives = 63/92 (68.48%), Query Frame = 1
Query:   16 LEAKGFQRSQADPCVFRRILHGEVVDVIVVYVDDLLVASATKRDEEQAVRDLDSCFPIKDLGEASYYLGCHITRDRNARTLKFDQHQYIQTI 291
            L + G+++ + DPC+FR+++ GEVV +IV+YVDD+++ SAT+ + E+ +  L   FP+KDLG+ ++Y GC I  D    T K  Q  YI+++
Sbjct:  463 LISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIML-SATEEEREELLASLQKRFPVKDLGDCTWYDGCAIEVDLENGTTKLSQTAYIESM 553          
BLAST of mRNA_H-elongata_contig59779.13494.1 vs. uniprot
Match: A0A6H5K9E2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9E2_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 3.600e-16
Identity = 38/92 (41.30%), Postives = 63/92 (68.48%), Query Frame = 1
Query:   16 LEAKGFQRSQADPCVFRRILHGEVVDVIVVYVDDLLVASATKRDEEQAVRDLDSCFPIKDLGEASYYLGCHITRDRNARTLKFDQHQYIQTI 291
            L + G+++ + DPC+FR+++ GEVV +IV+YVDD+++ SAT+ + E+ +  L   FP+KDLG+ ++Y GC I  D    T K  Q  YI+++
Sbjct:  716 LISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIML-SATEEEREELLASLQKRFPVKDLGDCTWYDGCAIEVDLENGTTKLSQTAYIESM 806          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59779.13494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUB8_9PHAE2.040e-2942.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5LQZ7_9PHAE1.280e-2737.42Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KHN5_9PHAE2.280e-1927.03CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L296_9PHAE5.830e-1746.59Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K9U4_9PHAE1.010e-1629.07Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KCN6_9PHAE2.410e-1641.30Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KR39_9PHAE3.420e-1641.30Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JHI8_9PHAE3.440e-1641.30Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L6D6_9PHAE3.490e-1641.30Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K9E2_9PHAE3.600e-1641.30Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59779contigH-elongata_contig59779:419..1443 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.3
Seed ortholog evalue1.7e-12
Seed eggNOG ortholog164328.Phyra87656
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3Q8Z1@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size465
Cds size465
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930967.3240302-CDS-H-elongata_contig59779:418..5951622930967.3240302-CDS-H-elongata_contig59779:418..595Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59779 419..595 -
1691679643.8488128-CDS-H-elongata_contig59779:418..5951691679643.8488128-CDS-H-elongata_contig59779:418..595Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59779 419..595 -
1622930967.3394186-CDS-H-elongata_contig59779:1155..14431622930967.3394186-CDS-H-elongata_contig59779:1155..1443Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59779 1156..1443 -
1691679643.8641276-CDS-H-elongata_contig59779:1155..14431691679643.8641276-CDS-H-elongata_contig59779:1155..1443Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59779 1156..1443 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59779.13494.1prot_H-elongata_contig59779.13494.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59779 419..1443 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59779.13494.1

>prot_H-elongata_contig59779.13494.1 ID=prot_H-elongata_contig59779.13494.1|Name=mRNA_H-elongata_contig59779.13494.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=155bp
QIGIELEAKGFQRSQADPCVFRRILHGEVVDVIVVYVDDLLVASATKRDE
EQAVRDLDSCFPIKDLGEASYYLGCHITRDRNARTLKFDQHQYIQTIHED
NEGAIKMTKNRFSSQRTRHVDIKHHIVHDAIEGGVVHVEYVRSGEQHADI
FTKSV
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mRNA from alignment at H-elongata_contig59779:419..1443-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59779.13494.1 ID=mRNA_H-elongata_contig59779.13494.1|Name=mRNA_H-elongata_contig59779.13494.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1025bp|location=Sequence derived from alignment at H-elongata_contig59779:419..1443- (Himanthalia elongata Himel1 dioecious)
CAAATCGGGATCGAGCTCGAGGCGAAGGGTTTCCAGAGATCTCAAGCCGA CCCATGCGTGTTCCGGCGGATTCTCCACGGCGAAGTAGTAGACGTCATCG TGGTCTACGTCGACGACCTCCTGGTTGCTAGTGCGACGAAACGTGACGAG GAGCAAGCGGTAAGGGACCTGGACTCCTGTTTCCCCATCAAGGATCTGGG GGAGGCTTCATATTACCTGGGATGCCACATCACGCGGGACCGGAACGCCA GGACACTGAAGTTCGACCAGCATCAGTACATACAGACTGTGGCGGAACGT TTTGGCGTGACGAAGACCAGCATCATTCCGTCTGCGGTAGGAGGAAAAGC CCCTTCGAAATCAGACAGCCCGCAAACGGACGCAGAGGTTGAAGAAATGC GCCAGATTCCTTACCGAGAAATCGTTGGGGCCCTGATGTGGGCAGCGACG ATGACCAGGCTCGATATTTCGTTCGCTGCACACCAACTGGCGAAATTCAA CGACAACCCGGGACCGATACACTGGAGGTCAGCCCAGAAAGCGCTGCAAT ATTTATGGCACACTCGGGACCTCGGGATCACCTACGGAGGGGAACCGGGG GGGGGACCAAGTTATCAGCGTGGATCGACGCAGACTACGGCACCTGCCCG GACACGCGTCGCTCAGTGTCGGGAGGGGCGGTGATGATGGCTGGCGGGGC CATTAGTTGGTTCTCGCGAGTACAAAAGGTAACGGCGGCGGGGTCGTCCG AATCAGAATACGTCACGCTGGCTGAGATGGTAAACGAGTTGCGTTTCCTA CGACAGGTCAAGGAGTTCATGACCCCCCCAATCGAAGTCGCCATCAAGAT ACACGAGGACAACGAAGGCGCAATCAAGATGACGAAAAACCGCTTCAGCA GTCAACGAACGAGGCACGTGGACATCAAGCATCACATTGTCCACGACGCG ATCGAGGGGGGGGTGGTTCACGTAGAATACGTTCGGTCCGGGGAACAGCA CGCCGACATCTTCACGAAGTCCGTA
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Coding sequence (CDS) from alignment at H-elongata_contig59779:419..1443-

>mRNA_H-elongata_contig59779.13494.1 ID=mRNA_H-elongata_contig59779.13494.1|Name=mRNA_H-elongata_contig59779.13494.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=930bp|location=Sequence derived from alignment at H-elongata_contig59779:419..1443- (Himanthalia elongata Himel1 dioecious)
CAAATCGGGATCGAGCTCGAGGCGAAGGGTTTCCAGAGATCTCAAGCCGA
CCCATGCGTGTTCCGGCGGATTCTCCACGGCGAAGTAGTAGACGTCATCG
TGGTCTACGTCGACGACCTCCTGGTTGCTAGTGCGACGAAACGTGACGAG
GAGCAAGCGGTAAGGGACCTGGACTCCTGTTTCCCCATCAAGGATCTGGG
GGAGGCTTCATATTACCTGGGATGCCACATCACGCGGGACCGGAACGCCA
GGACACTGAAGTTCGACCAGCATCAGTACATACAGACTCAAATCGGGATC
GAGCTCGAGGCGAAGGGTTTCCAGAGATCTCAAGCCGACCCATGCGTGTT
CCGGCGGATTCTCCACGGCGAAGTAGTAGACGTCATCGTGGTCTACGTCG
ACGACCTCCTGGTTGCTAGTGCGACGAAACGTGACGAGGAGCAAGCGGTA
AGGGACCTGGACTCCTGTTTCCCCATCAAGGATCTGGGGGAGGCTTCATA
TTACCTGGGATGCCACATCACGCGGGACCGGAACGCCAGGACACTGAAGT
TCGACCAGCATCAGTACATACAGACTATACACGAGGACAACGAAGGCGCA
ATCAAGATGACGAAAAACCGCTTCAGCAGTCAACGAACGAGGCACGTGGA
CATCAAGCATCACATTGTCCACGACGCGATCGAGGGGGGGGTGGTTCACG
TAGAATACGTTCGGTCCGGGGAACAGCACGCCGACATCTTCACGAAGTCC
GTAATACACGAGGACAACGAAGGCGCAATCAAGATGACGAAAAACCGCTT
CAGCAGTCAACGAACGAGGCACGTGGACATCAAGCATCACATTGTCCACG
ACGCGATCGAGGGGGGGGTGGTTCACGTAGAATACGTTCGGTCCGGGGAA
CAGCACGCCGACATCTTCACGAAGTCCGTA
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