mRNA_H-elongata_contig59468.13461.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59468.13461.1
Unique NamemRNA_H-elongata_contig59468.13461.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig59468.13461.1 vs. uniprot
Match: A0A6H5JLR6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLR6_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 4.590e-27
Identity = 51/78 (65.38%), Postives = 69/78 (88.46%), Query Frame = 1 
Query:    1 DKVGDFSGLTPDRLLLETEKALSAEQLYRPHLNLMEMQESTGKKINEEETIKKKLEGLKTELSSVEQDVQRYEDRQEK 234
            DKVGDFSG TPD+LLLETEKALS  +LY PH+ L+++Q+S G+  NEEET++ KLEG+++ELS++E+DVQRY++RQEK
Sbjct:   13 DKVGDFSGFTPDKLLLETEKALSITELYDPHMKLIDLQDSKGETQNEEETMRTKLEGMESELSTLEKDVQRYQERQEK 90
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BLAST of mRNA_H-elongata_contig59468.13461.1 vs. uniprot
Match: D7FUV3_ECTSI (Structural maintenance of chromosomes protein 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUV3_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 2.070e-25
Identity = 52/78 (66.67%), Postives = 69/78 (88.46%), Query Frame = 1 
Query:    1 DKVGDFSGLTPDRLLLETEKALSAEQLYRPHLNLMEMQESTGKKINEEETIKKKLEGLKTELSSVEQDVQRYEDRQEK 234
            DKVGDFSG TPD+LLLETEKALS  +LY PH+ L+++Q+S GK  NEEET++ KLEG+++ELS++E+DVQRY++RQEK
Sbjct:  168 DKVGDFSGFTPDKLLLETEKALSGTELYDPHMKLIDLQDSKGKSQNEEETMRTKLEGMESELSTLEKDVQRYQERQEK 245
[Close]
BLAST of mRNA_H-elongata_contig59468.13461.1 vs. uniprot
Match: A0A6H5JJB3_9PHAE (Structural maintenance of chromosomes protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJB3_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 3.400e-25
Identity = 52/78 (66.67%), Postives = 70/78 (89.74%), Query Frame = 1 
Query:    1 DKVGDFSGLTPDRLLLETEKALSAEQLYRPHLNLMEMQESTGKKINEEETIKKKLEGLKTELSSVEQDVQRYEDRQEK 234
            DKVGDFSG TPD+LLLETEKALS+ +LY PH+ L+++Q+S GK  NEEET++ KLEG+++ELS++E+DVQRY++RQEK
Sbjct:  171 DKVGDFSGFTPDKLLLETEKALSSTELYDPHMKLVDLQDSKGKSQNEEETMRTKLEGMESELSALEKDVQRYQERQEK 248
[Close]
BLAST of mRNA_H-elongata_contig59468.13461.1 vs. uniprot
Match: A0A7S1BUZ0_9STRA (Structural maintenance of chromosomes protein 5 n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BUZ0_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 8.270e-10
Identity = 34/77 (44.16%), Postives = 49/77 (63.64%), Query Frame = 1 
Query:    1 DKVGDFSGLTPDRLLLETEKALSAEQLYRPHLNLMEMQESTGKKINEEETIKKKLEGLKTELSSVEQDVQRYEDRQE 231
            DKVG FSG TP ++L ET+KALS EQ+Y  H  L++++E         E++  KL  LK E   +E++ +R E+RQE
Sbjct:  256 DKVGGFSGFTPQQVLKETQKALSGEQMYNVHERLIQLEEELHNSNRTVESVGDKLSSLKAENEQLEREKKRMEERQE 332
[Close]
BLAST of mRNA_H-elongata_contig59468.13461.1 vs. uniprot
Match: A0A7S1BU77_9STRA (Structural maintenance of chromosomes protein 5 n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BU77_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 8.940e-10
Identity = 34/77 (44.16%), Postives = 49/77 (63.64%), Query Frame = 1 
Query:    1 DKVGDFSGLTPDRLLLETEKALSAEQLYRPHLNLMEMQESTGKKINEEETIKKKLEGLKTELSSVEQDVQRYEDRQE 231
            DKVG FSG TP ++L ET+KALS EQ+Y  H  L++++E         E++  KL  LK E   +E++ +R E+RQE
Sbjct:  151 DKVGGFSGFTPQQVLKETQKALSGEQMYNVHERLIQLEEELHNSNRTVESVGDKLSSLKAENEQLEREKKRMEERQE 227
[Close]
BLAST of mRNA_H-elongata_contig59468.13461.1 vs. uniprot
Match: A0A7S1BVC2_9STRA (Structural maintenance of chromosomes protein 5 n=3 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BVC2_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 9.060e-10
Identity = 34/77 (44.16%), Postives = 49/77 (63.64%), Query Frame = 1 
Query:    1 DKVGDFSGLTPDRLLLETEKALSAEQLYRPHLNLMEMQESTGKKINEEETIKKKLEGLKTELSSVEQDVQRYEDRQE 231
            DKVG FSG TP ++L ET+KALS EQ+Y  H  L++++E         E++  KL  LK E   +E++ +R E+RQE
Sbjct:  151 DKVGGFSGFTPQQVLKETQKALSGEQMYNVHERLIQLEEELHNSNRTVESVGDKLSSLKAENEQLEREKKRMEERQE 227
[Close]
BLAST of mRNA_H-elongata_contig59468.13461.1 vs. uniprot
Match: C1N4Q2_MICPC (Structural maintenance of chromosomes protein 5 n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N4Q2_MICPC)

HSP 1 Score: 53.5 bits (127), Expect = 2.240e-6
Identity = 28/76 (36.84%), Postives = 51/76 (67.11%), Query Frame = 1 
Query:    1 DKVGDFSGLTPDRLLLETEKALSAEQLYRPHLNLMEMQESTGKKINEEETIKKKLEGLKTELSSVEQDVQRYEDRQ 228
            D+V +F+ +TP++LLLETEK +   QL+  H +L+EM++       +  + + ++E LK E +S+E+DV R+ +R+
Sbjct:  186 DRVVEFAKMTPEQLLLETEKTIENGQLHDKHASLIEMKQGIADLERDVSSKRARVEKLKLENASLERDVDRFNERE 261
[Close]
BLAST of mRNA_H-elongata_contig59468.13461.1 vs. uniprot
Match: A0A167QVJ2_CALVF (Structural maintenance of chromosomes protein 5 n=1 Tax=Calocera viscosa (strain TUFC12733) TaxID=1330018 RepID=A0A167QVJ2_CALVF)

HSP 1 Score: 53.5 bits (127), Expect = 2.240e-6
Identity = 31/77 (40.26%), Postives = 50/77 (64.94%), Query Frame = 1 
Query:    1 DKVGDFSGLTPDRLLLETEKALSAEQLYRPHLNLMEMQESTGKKINEEETIKKKLEGLKTELSSVEQDVQRYEDRQE 231
            D+V +F+ LTP++LL+ET+KA  A  L   H  L+EM ++  K  +E E +K + E L+   S +E+DV R+ +R+E
Sbjct:  258 DRVSEFAQLTPEKLLIETQKAAGAAGLTNWHQQLIEMGQARKKVTDEMEELKGEAEHLEQRNSVLERDVARFRERRE 334
[Close]
BLAST of mRNA_H-elongata_contig59468.13461.1 vs. uniprot
Match: M5GFX3_DACPD (Structural maintenance of chromosomes protein 5 n=1 Tax=Dacryopinax primogenitus (strain DJM 731) TaxID=1858805 RepID=M5GFX3_DACPD)

HSP 1 Score: 53.1 bits (126), Expect = 3.060e-6
Identity = 31/77 (40.26%), Postives = 49/77 (63.64%), Query Frame = 1 
Query:    1 DKVGDFSGLTPDRLLLETEKALSAEQLYRPHLNLMEMQESTGKKINEEETIKKKLEGLKTELSSVEQDVQRYEDRQE 231
            D+V +F+ LTP++LL+ET+KA  A  L R H  L++M +   K   E + +KK  E L+   S +E+DV R+ +R+E
Sbjct:  215 DRVSEFAQLTPEKLLIETQKAAGAAGLTRWHEQLIDMGKDRRKITEETDELKKDAEYLEQRNSVLERDVARFRERRE 291
[Close]
BLAST of mRNA_H-elongata_contig59468.13461.1 vs. uniprot
Match: A0A165IP37_9BASI (Structural maintenance of chromosomes protein 5 n=1 Tax=Calocera cornea HHB12733 TaxID=1353952 RepID=A0A165IP37_9BASI)

HSP 1 Score: 51.2 bits (121), Expect = 1.470e-5
Identity = 30/77 (38.96%), Postives = 48/77 (62.34%), Query Frame = 1 
Query:    1 DKVGDFSGLTPDRLLLETEKALSAEQLYRPHLNLMEMQESTGKKINEEETIKKKLEGLKTELSSVEQDVQRYEDRQE 231
            D+V +F+ LTP++LL+ET+KA  A  L   HL L+E  +   K  +E + +K   E L+   S +E+DV R+ +R+E
Sbjct:  255 DRVSEFAQLTPEKLLIETQKAAGAAGLTNWHLQLIEYGQERKKITDEVDELKTDAEHLEQRNSVLERDVARFRERRE 331
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59468.13461.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5JLR6_9PHAE4.590e-2765.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUV3_ECTSI2.070e-2566.67Structural maintenance of chromosomes protein 5 n=... [more]
A0A6H5JJB3_9PHAE3.400e-2566.67Structural maintenance of chromosomes protein 5 n=... [more]
A0A7S1BUZ0_9STRA8.270e-1044.16Structural maintenance of chromosomes protein 5 n=... [more]
A0A7S1BU77_9STRA8.940e-1044.16Structural maintenance of chromosomes protein 5 n=... [more]
A0A7S1BVC2_9STRA9.060e-1044.16Structural maintenance of chromosomes protein 5 n=... [more]
C1N4Q2_MICPC2.240e-636.84Structural maintenance of chromosomes protein 5 n=... [more]
A0A167QVJ2_CALVF2.240e-640.26Structural maintenance of chromosomes protein 5 n=... [more]
M5GFX3_DACPD3.060e-640.26Structural maintenance of chromosomes protein 5 n=... [more]
A0A165IP37_9BASI1.470e-538.96Structural maintenance of chromosomes protein 5 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59468contigH-elongata_contig59468:2975..3365 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score106.3
Seed ortholog evalue6.8e-21
Seed eggNOG ortholog2880.D7FUV3
EggNOG free text desc.sister chromatid cohesion
EggNOG OGsCOG1196@1,KOG0979@2759
Ec32 orthologEc-06_001220.1
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-06_001240.1
Exons2
Model size243
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930963.7005692-CDS-H-elongata_contig59468:2974..30941622930963.7005692-CDS-H-elongata_contig59468:2974..3094Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59468 2975..3094 +
1691679642.5474968-CDS-H-elongata_contig59468:2974..30941691679642.5474968-CDS-H-elongata_contig59468:2974..3094Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59468 2975..3094 +
1622930963.7218301-CDS-H-elongata_contig59468:3242..33651622930963.7218301-CDS-H-elongata_contig59468:3242..3365Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59468 3243..3365 +
1691679642.5593755-CDS-H-elongata_contig59468:3242..33651691679642.5593755-CDS-H-elongata_contig59468:3242..3365Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59468 3243..3365 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59468.13461.1prot_H-elongata_contig59468.13461.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59468 2975..3365 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59468.13461.1

>prot_H-elongata_contig59468.13461.1 ID=prot_H-elongata_contig59468.13461.1|Name=mRNA_H-elongata_contig59468.13461.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
DKVGDFSGLTPDRLLLETEKALSAEQLYRPHLNLMEMQESTGKKINEEET
IKKKLEGLKTELSSVEQDVQRYEDRQEKKKK
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mRNA from alignment at H-elongata_contig59468:2975..3365+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59468.13461.1 ID=mRNA_H-elongata_contig59468.13461.1|Name=mRNA_H-elongata_contig59468.13461.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=391bp|location=Sequence derived from alignment at H-elongata_contig59468:2975..3365+ (Himanthalia elongata Himel1 dioecious)
GACAAGGTTGGCGATTTCTCGGGGCTAACTCCCGACAGACTGCTGCTCGA
GACGGAAAAGGCGCTCTCAGCCGAACAGCTGTACCGGCCTCATCTAAATC
TGATGGAGATGCAGGAATCGGTGAGCTTTGGGCGGCGTACGCTATCGAAC
TCATCCCCCGATTCTCCTCGACCACGGGGCAGCTTGTGATGATGCCCACC
CCCATTCTCTCATCGGCATTTTGTTTTCACAAATGCTTGTCGTAATATGC
TGCCCTCCTGGGCCTCAGACTGGCAAAAAGATTAATGAGGAAGAGACAAT
CAAGAAGAAGCTTGAAGGCTTGAAGACCGAGCTGTCTAGTGTCGAGCAAG
ATGTGCAGCGATACGAAGACCGCCAAGAGAAAAAGAAAAAG
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Coding sequence (CDS) from alignment at H-elongata_contig59468:2975..3365+

>mRNA_H-elongata_contig59468.13461.1 ID=mRNA_H-elongata_contig59468.13461.1|Name=mRNA_H-elongata_contig59468.13461.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig59468:2975..3365+ (Himanthalia elongata Himel1 dioecious)
GACAAGGTTGGCGATTTCTCGGGGCTAACTCCCGACAGACTGCTGCTCGA
GACGGAAAAGGCGCTCTCAGCCGAACAGCTGTACCGGCCTCATCTAAATC
TGATGGAGATGCAGGAATCGGACAAGGTTGGCGATTTCTCGGGGCTAACT
CCCGACAGACTGCTGCTCGAGACGGAAAAGGCGCTCTCAGCCGAACAGCT
GTACCGGCCTCATCTAAATCTGATGGAGATGCAGGAATCGACTGGCAAAA
AGATTAATGAGGAAGAGACAATCAAGAAGAAGCTTGAAGGCTTGAAGACC
GAGCTGTCTAGTGTCGAGCAAGATGTGCAGCGATACGAAGACCGCCAAGA
GAAAAAGAAAAAGACTGGCAAAAAGATTAATGAGGAAGAGACAATCAAGA
AGAAGCTTGAAGGCTTGAAGACCGAGCTGTCTAGTGTCGAGCAAGATGTG
CAGCGATACGAAGACCGCCAAGAGAAAAAGAAAAAG
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