mRNA_H-elongata_contig59188.13431.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59188.13431.1
Unique NamemRNA_H-elongata_contig59188.13431.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig59188.13431.1 vs. uniprot
Match: A0A6H5KGF5_9PHAE (Fe2OG dioxygenase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KGF5_9PHAE)

HSP 1 Score: 410 bits (1055), Expect = 1.250e-141
Identity = 200/264 (75.76%), Postives = 223/264 (84.47%), Query Frame = 1
Query:    1 LQVLDWIRKRHGFKSFDDKIFPSLRLLHADPVVFEIEDFFTSEECNTYVKMSTEAKSGRRNSGFKSMELRSATTSSQSHFQEQRTSTTWFHHYASAPELLAKASALLGVEDYRLWEEPQTVRYRPGERFSWHLDALPPAETGASKGGQRTATVLVYLTNIDANAGGATAFRDLGPLRVRPKKGKCLVFFPSFGGEAGCPFDIRTLHAGEVVGQLLGKGKKSKEKYIAQLWCHKKPYPPSVPVGSSHEAAEEYMADYYRRWRKKG 792
            ++V D IR+RHGF+ FD+K+FP +RLLHADPVVFE+E FFT +EC+ Y+ MST  KSGRR  G    EL+SATTSSQ   Q+  TSTTWFHHYASAPEL+AKAS LLGV+DY  WEEPQTVRYRPGERF+WHLDALPP+E GASKGGQRTATVLVYLTN+ AN GGATAFRDLGPLRVRPKKGKCLVFFPSFGGEAG PFD R LHAGEVVGQ    G K+KEKYIAQLWCHKKPYPPSVP GSSHEAAE+ + DY RR+ + G
Sbjct:   98 VEVADRIRERHGFEHFDEKLFPGIRLLHADPVVFEVEGFFTPQECDAYIAMSTLKKSGRRKGGLAPTELQSATTSSQC--QQXXTSTTWFHHYASAPELVAKASLLLGVDDYSKWEEPQTVRYRPGERFNWHLDALPPSECGASKGGQRTATVLVYLTNMHANGGGATAFRDLGPLRVRPKKGKCLVFFPSFGGEAGSPFDSRVLHAGEVVGQ----GNKAKEKYIAQLWCHKKPYPPSVPEGSSHEAAEKPIVDYARRFAEAG 355          
BLAST of mRNA_H-elongata_contig59188.13431.1 vs. uniprot
Match: D7G1H9_ECTSI (Fe2OG dioxygenase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1H9_ECTSI)

HSP 1 Score: 251 bits (641), Expect = 5.290e-79
Identity = 135/256 (52.73%), Postives = 166/256 (64.84%), Query Frame = 1
Query:   58 IFPSLRLLHADPVVFEIEDFFTSEECNTYVKMSTEAKSGRRNS------------GFKSMELRSATTSSQSHFQEQRTSTTWFHHYASAPELLAKASALLGV--EDYRLWEEPQTVRYRPGERFSWHLDALPPAETGASKGGQRTATVLVYLTNIDANAGGATAFRDLGPLRVRPKKGKCLVFFPSFGGEAGCPFDIRTLHAGEVVGQLLGKGKKSKEKYIAQLWCHKKPYPPSVPVGSSHEAAEEYMADYYRRWR 783
            +FP LRLLHA+P V  + DFFT EEC+ Y+  S                      G      RSAT  +      QRTSTTWFH +++ PEL+AKASAL+GV  E+ R WEE QTVRYRPGE+F+WHLDALPPA   AS+GGQR AT+LVYLT +    GGATAFRDLGPLRVRP+KG  L+FFPS GG   CPFDIRTLHAGEVV     +    ++K+IAQLW  +  Y P+VP  + HE A   +A++ + W+
Sbjct:  100 LFPGLRLLHAEPPVIGVSDFFTDEECDEYISRSVSPPXXXXXXXXXXXXXXXXXXGSGPHMQRSATLGADVDAVAQRTSTTWFHRFSAVPELMAKASALVGVPFEEGR-WEEAQTVRYRPGEKFTWHLDALPPAPDLASRGGQRIATLLVYLTEMPEGDGGATAFRDLGPLRVRPRKGSALLFFPSLGGAPDCPFDIRTLHAGEVV-----RPGAEQDKWIAQLWLRESRYTPTVPKQNRHEHAAAVVAEFDKIWQ 349          
BLAST of mRNA_H-elongata_contig59188.13431.1 vs. uniprot
Match: A0A6H5L0Y5_9PHAE (Fe2OG dioxygenase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Y5_9PHAE)

HSP 1 Score: 251 bits (640), Expect = 3.090e-76
Identity = 135/260 (51.92%), Postives = 166/260 (63.85%), Query Frame = 1
Query:   58 IFPSLRLLHADPVVFEIEDFFTSEECNTYVKMSTEAKSGRRNSGFKSMEL----------------RSATTSSQSHFQEQRTSTTWFHHYASAPELLAKASALLGV--EDYRLWEEPQTVRYRPGERFSWHLDALPPAETGASKGGQRTATVLVYLTNIDANAGGATAFRDLGPLRVRPKKGKCLVFFPSFGGEAGCPFDIRTLHAGEVVGQLLGKGKKSKEKYIAQLWCHKKPYPPSVPVGSSHEAAEEYMADYYRRWR 783
            +FP LRLLHA+P V  + DFFT EEC+ Y+  S                                 RSAT  +      QRTSTTWFH +++ PEL+AKASAL+GV  E+ R WEE QTVRYRPGE+F+WHLDALPPA   ASKGGQR AT+LVYLT +    GGATAFRDLGPLRVRP+KG  L+FFPS GG   CPFDIRTLHAGEVV     +    ++K+IAQLW  ++ Y P+VP  + HE A   +A++ + W+
Sbjct:  322 LFPGLRLLHAEPPVIGVSDFFTDEECDEYISRSVSPPXXXXXXXXXXXXXXXXXXXXXXXXGPHMQRSATLGADVDAVAQRTSTTWFHRFSAVPELMAKASALVGVPFEEGR-WEEAQTVRYRPGEKFTWHLDALPPAPDLASKGGQRIATLLVYLTEMPEGDGGATAFRDLGPLRVRPRKGSALLFFPSLGGAPDCPFDIRTLHAGEVV-----RPGAEQDKWIAQLWLRERRYTPTVPKQNRHEHAASAVAEFDKIWQ 575          
BLAST of mRNA_H-elongata_contig59188.13431.1 vs. uniprot
Match: K0SVE6_THAOC (Fe2OG dioxygenase domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SVE6_THAOC)

HSP 1 Score: 240 bits (613), Expect = 2.650e-73
Identity = 124/243 (51.03%), Postives = 158/243 (65.02%), Query Frame = 1
Query:   61 FPSLRLLHADPVVFEIEDFFTSEECNTYVKMSTEAKSGRRNSGFKSMEL---RSATTSSQSHFQEQRTSTTWFHHYASAPELLAKASALLGVEDYRLWEEPQTVRYRPGERFSWHLDALPP-AETGASKGGQRTATVLVYLTNIDANAGGATAFRDLG---PLRVRPKKGKCLVFFPSFGGEAGCPFDIRTLHAGEVVGQLLGKGKKSKEKYIAQLWCHKKPYPPSVPVGSSHEAAEEYMADY 768
            F   R+LH DP+V  ++DFFTSEEC+ YV+MS +A++ +         L   +S T    S  + QRTSTTWFHHYA  PEL+A+A+ LLG+     +EEPQTVRYR  E+F+WHLDAL P     +S  GQR +T+LVYLT++ +  GGAT FRDLG   PL+VRPKKG  L+FFPS GG   CPFDIRTLH GE VG+         EK+IAQLW  ++ Y P+ P GS H  A   + +Y
Sbjct:  229 FEQFRVLHVDPMVIAVDDFFTSEECDKYVQMSIDAENNQDQEAGALQPLLLGQSQTVGKDSRSKAQRTSTTWFHHYAGVPELMARAARLLGLPGISRFEEPQTVRYRRSEKFTWHLDALSPDVANDSSSAGQRVSTLLVYLTDLKSEEGGATMFRDLGGDGPLKVRPKKGSALLFFPSAGGIPDCPFDIRTLHCGEAVGE-----DAPNEKWIAQLWLRQRDYTPTAPAGSEHRKATVAIQEY 466          
BLAST of mRNA_H-elongata_contig59188.13431.1 vs. uniprot
Match: A0A7S2KCF3_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KCF3_9STRA)

HSP 1 Score: 238 bits (608), Expect = 5.930e-73
Identity = 122/241 (50.62%), Postives = 161/241 (66.80%), Query Frame = 1
Query:   61 FPSLRLLHADPVVFEIEDFFTSEECNTYVKMSTEAKSGRRNSGFKSMELRSATTSSQSHFQEQRTSTTWFHHYASAPELLAKASALLGVEDYRLWEEPQTVRYRPGERFSWHLDALPPAETGASKGGQRTATVLVYLTNIDANAGGATAFRDLGP-----LRVRPKKGKCLVFFPSFGGEAGCPFDIRTLHAGEVVGQLLGKGKKSKEKYIAQLWCHKKPYPPSVPVGSSHEAAEEYMADY 768
            F   R+LH DP+V  ++DFFT EEC+ Y+ MS +  +G ++    ++  RS T    +  + QRTSTTWFHHY + PEL+AK+S L G++D  ++EEPQTVRY+P ++F+WHLDAL P     SKGGQRTAT+LVYLT++    GGAT FRDLGP     L+V+PKKG  L+FFP+ GG    PFDIRTLHAGEVV           +K+IAQLW  +  Y P+VP  + H AA E ++ Y
Sbjct:  202 FDKFRVLHIDPLVIAVDDFFTHEECDKYIAMS-DPTAGNKDGD--AVMTRSMTVGKDAAAKSQRTSTTWFHHYKNVPELMAKSSRLFGLDDIGVFEEPQTVRYQPDQKFTWHLDALAPGSENISKGGQRTATLLVYLTDLGPEDGGATTFRDLGPAEGEPLKVQPKKGSALLFFPAAGGIPNTPFDIRTLHAGEVVS-----ADCKSDKWIAQLWLREDSYEPTVPPENVHAAATEPISQY 434          
BLAST of mRNA_H-elongata_contig59188.13431.1 vs. uniprot
Match: A0A7S2KB24_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KB24_9STRA)

HSP 1 Score: 238 bits (608), Expect = 1.110e-72
Identity = 129/259 (49.81%), Postives = 161/259 (62.16%), Query Frame = 1
Query:   61 FPSLRLLHADPVVFEIEDFFTSEECNTYVKMSTEAKSGRRNSGFKSMEL-------------RSATTSSQSHFQEQRTSTTWFHHYASAPELLAKASALLGVEDYRLWEEPQTVRYRPGERFSWHLDALPPAETGASKG-GQRTATVLVYLTNIDANAGGATAFRDLG---------PLRVRPKKGKCLVFFPSFGGEAGCPFDIRTLHAGEVVGQLLGKGKKSKEKYIAQLWCHKKPYPPSVPVGSSHEAAEEYMADY 768
            F   R+LH DP+V  I+DFFT+EEC+ YV++S +A+  + NS     E              +S T    S  + QRTSTTWFH+Y   PEL+AKAS LLG+E    +EEPQTVRYR  E+F+WHLDAL P E     G GQR AT+LVYLT++ A +GGAT FRDLG         PL+VRPKKG  L+FFPS GG  G PFDIRTLH GE V +         EK+IAQLW  ++ Y P+ PVG+SH  A + +  Y
Sbjct:  204 FEKFRVLHTDPMVLAIDDFFTNEECDKYVQISIDAEKQQTNSAAAGDETTQEETALQPMLLGQSQTVGKDSRSKAQRTSTTWFHYYKGVPELMAKASRLLGLEGIDRFEEPQTVRYRRNEKFTWHLDALSPEEANNPSGSGQRIATLLVYLTDVPAGSGGATMFRDLGGNNGAEDSQPLKVRPKKGSALLFFPSAGGIPGAPFDIRTLHCGEAVAE-----DAENEKWIAQLWLRQRGYEPTAPVGNSHGDASDEIGRY 457          
BLAST of mRNA_H-elongata_contig59188.13431.1 vs. uniprot
Match: A0A7S1ZRX7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZRX7_9STRA)

HSP 1 Score: 231 bits (589), Expect = 2.640e-72
Identity = 117/242 (48.35%), Postives = 159/242 (65.70%), Query Frame = 1
Query:   61 FPSLRLLHADPVVFEIEDFFTSEECNTYVKMSTEAKSGRRNSGFKSMEL-RSATTSSQSHFQEQRTSTTWFHHYASAPELLAKASALLGVEDYRLWEEPQTVRYRPGERFSWHLDALPPAETGASKGGQRTATVLVYLTNIDANAGGATAFRDLG-----PLRVRPKKGKCLVFFPSFGGEAGCPFDIRTLHAGEVVGQLLGKGKKSKEKYIAQLWCHKKPYPPSVPVGSSHEAAEEYMADY 768
            F   R+LH DP+V  ++DF TS+EC+T V ++   K  + N+    M++ +S T     + + QRTSTTWFHHY   P+L+AKAS LLG+++   WEEPQTVRYR  E+F+WHLDAL P++  A  GGQR AT++VYL ++   +GG+T FRDLG     PL+V PKKG  LVFFP+ GG    PFDIRTLHAGE V       +   +K+IAQLW  +  Y P+ P G++H AA + ++ Y
Sbjct:   26 FEKFRVLHVDPMVLCVDDFLTSDECDTLVALTDNPKYDK-NANTAPMKIGQSKTVGKDMYSKSQRTSTTWFHHYRGLPQLMAKASRLLGLDNIDRWEEPQTVRYRRSEKFTWHLDALGPSDELAKSGGQRVATLIVYLADLPEGSGGSTMFRDLGGESGEPLKVHPKKGSALVFFPAAGGIPNVPFDIRTLHAGEAVSD-----ESEDDKWIAQLWLRETKYTPTAPPGNTHAAATDAISKY 261          
BLAST of mRNA_H-elongata_contig59188.13431.1 vs. uniprot
Match: A0A7S2N1B0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N1B0_9STRA)

HSP 1 Score: 231 bits (588), Expect = 8.710e-72
Identity = 118/241 (48.96%), Postives = 156/241 (64.73%), Query Frame = 1
Query:   61 FPSLRLLHADPVVFEIEDFFTSEECNTYVKMSTEAKSGRRNSGFKSMEL-RSATTSSQSHFQEQRTSTTWFHHYASAPELLAKASALLGVEDYRLWEEPQTVRYRPGERFSWHLDALPPAETGASKGGQRTATVLVYLTNIDANAGGATAFRDLG-----PLRVRPKKGKCLVFFPSFGGEAGCPFDIRTLHAGEVVGQLLGKGKKSKEKYIAQLWCHKKPYPPSVPVGSSHEAAEEYMAD 765
            F   R+LH DP++  I+DF T  EC+TY+ +++  K  + N+    ME+ +S T     + + QRTSTTWFHHY     L+AKAS LLG++    WEEPQTVRYR  E+F+WHLDAL P+E     GGQR AT+LVYL ++    GG+T FRDLG     PL+V+PKKG  L+FFP+ GG    PFDIRTLHAGE V       +   +K+IAQLW  +  Y P+ P G+SHEAA E +++
Sbjct:   57 FTKFRILHTDPMLLSIDDFLTPTECDTYISLTSNPKYDK-NANTAPMEIGQSKTVGKDMYSKSQRTSTTWFHHYRGMAGLMAKASRLLGLKGIERWEEPQTVRYRRSEKFTWHLDALAPSEELTKAGGQRVATLLVYLADLPDGCGGSTMFRDLGGESGEPLKVQPKKGSALLFFPAAGGIPNVPFDIRTLHAGEAVSD-----ESDDDKWIAQLWLREHVYTPTAPPGNSHEAAVEAVSE 291          
BLAST of mRNA_H-elongata_contig59188.13431.1 vs. uniprot
Match: A0A7S4QXQ4_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QXQ4_9STRA)

HSP 1 Score: 231 bits (589), Expect = 4.970e-71
Identity = 117/242 (48.35%), Postives = 159/242 (65.70%), Query Frame = 1
Query:   61 FPSLRLLHADPVVFEIEDFFTSEECNTYVKMSTEAKSGRRNSGFKSMEL-RSATTSSQSHFQEQRTSTTWFHHYASAPELLAKASALLGVEDYRLWEEPQTVRYRPGERFSWHLDALPPAETGASKGGQRTATVLVYLTNIDANAGGATAFRDLG-----PLRVRPKKGKCLVFFPSFGGEAGCPFDIRTLHAGEVVGQLLGKGKKSKEKYIAQLWCHKKPYPPSVPVGSSHEAAEEYMADY 768
            F   R+LH DP+V  ++DF TS+EC+T V ++   K  + N+    M++ +S T     + + QRTSTTWFHHY   P+L+AKAS LLG+++   WEEPQTVRYR  E+F+WHLDAL P++  A  GGQR AT++VYL ++   +GG+T FRDLG     PL+V PKKG  LVFFP+ GG    PFDIRTLHAGE V       +   +K+IAQLW  +  Y P+ P G++H AA + ++ Y
Sbjct:  123 FEKFRVLHVDPMVLCVDDFLTSDECDTLVALTDNPKYDK-NANTAPMKIGQSKTVGKDMYSKSQRTSTTWFHHYRGLPQLMAKASRLLGLDNIDRWEEPQTVRYRRSEKFTWHLDALGPSDELAKSGGQRVATLIVYLADLPEGSGGSTMFRDLGGESGEPLKVHPKKGSALVFFPAAGGIPNVPFDIRTLHAGEAVSD-----ESEDDKWIAQLWLRETKYTPTAPPGNTHAAATDAISKY 358          
BLAST of mRNA_H-elongata_contig59188.13431.1 vs. uniprot
Match: A0A7S2UAB3_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UAB3_9STRA)

HSP 1 Score: 232 bits (591), Expect = 5.920e-70
Identity = 122/249 (49.00%), Postives = 153/249 (61.45%), Query Frame = 1
Query:   55 KIFPSLRLLHADPVVFEIEDFFTSEECNTYVKMSTEAKSGRRNSGFKSMEL------RSATTSSQSHFQEQRTSTTWFHHYASAPELLAKASALLGVEDYRLWEEPQTVRYRPGERFSWHLDALPPAETGASKGGQRTATVLVYLTNIDANAGGATAFRDLG-----PLRVRPKKGKCLVFFPSFGGEAGCPFDIRTLHAGEVVGQLLGKGKKSKEKYIAQLWCHKKPYPPSVPVGSSHEAAEEYMADY 768
            K F   R+LH DP+V  ++DFFT EEC+  +  ST       N+  +   L      +S T    S  + QRTSTTWFHHYA  PEL+AKA  L+G+ D   +EEPQTVRYR  E F+WHLDAL P    A KGGQR AT+LVYLT++    GGAT FRDLG     PL+VRPKKG  L+FFP+ GG    P D+RTLH GE V          ++K+IAQLW  + PY P+ P G+SH +A   ++DY
Sbjct:  233 KPFSKFRVLHVDPMVLCVDDFFTPEECDALIARSTTTVITADNNEKEGTTLLPMKIGQSKTVGKDSRARAQRTSTTWFHHYAGVPELMAKACRLMGINDISAFEEPQTVRYRRTEHFTWHLDALAPTPELADKGGQRCATLLVYLTDLSEKDGGATMFRDLGGSDGEPLKVRPKKGSALLFFPAAGGIPSVPLDLRTLHCGEAVAS-----DAEQDKWIAQLWLRETPYTPTAPPGNSHASASSPISDY 476          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59188.13431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KGF5_9PHAE1.250e-14175.76Fe2OG dioxygenase domain-containing protein n=2 Ta... [more]
D7G1H9_ECTSI5.290e-7952.73Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A6H5L0Y5_9PHAE3.090e-7651.92Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
K0SVE6_THAOC2.650e-7351.03Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A7S2KCF3_9STRA5.930e-7350.62Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2KB24_9STRA1.110e-7249.81Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S1ZRX7_9STRA2.640e-7248.35Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2N1B0_9STRA8.710e-7248.96Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
A0A7S4QXQ4_9STRA4.970e-7148.35Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S2UAB3_9STRA5.920e-7049.00Hypothetical protein n=1 Tax=Attheya septentrional... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59188contigH-elongata_contig59188:2475..3399 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score406.0
Seed ortholog evalue1.4e-110
Seed eggNOG ortholog2880.D8LRR7
EggNOG free text desc.procollagen-proline 4-dioxygenase activity
EggNOG OGsKOG1591@1,KOG1591@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size795
Cds size795
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930960.6001384-CDS-H-elongata_contig59188:2474..28071622930960.6001384-CDS-H-elongata_contig59188:2474..2807Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59188 2475..2807 -
1691679641.2922072-CDS-H-elongata_contig59188:2474..28071691679641.2922072-CDS-H-elongata_contig59188:2474..2807Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59188 2475..2807 -
1622930960.6480508-CDS-H-elongata_contig59188:2937..33991622930960.6480508-CDS-H-elongata_contig59188:2937..3399Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59188 2938..3399 -
1691679641.3021064-CDS-H-elongata_contig59188:2937..33991691679641.3021064-CDS-H-elongata_contig59188:2937..3399Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59188 2938..3399 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59188.13431.1prot_H-elongata_contig59188.13431.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59188 2475..3399 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59188.13431.1

>prot_H-elongata_contig59188.13431.1 ID=prot_H-elongata_contig59188.13431.1|Name=mRNA_H-elongata_contig59188.13431.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=265bp
LQVLDWIRKRHGFKSFDDKIFPSLRLLHADPVVFEIEDFFTSEECNTYVK
MSTEAKSGRRNSGFKSMELRSATTSSQSHFQEQRTSTTWFHHYASAPELL
AKASALLGVEDYRLWEEPQTVRYRPGERFSWHLDALPPAETGASKGGQRT
ATVLVYLTNIDANAGGATAFRDLGPLRVRPKKGKCLVFFPSFGGEAGCPF
DIRTLHAGEVVGQLLGKGKKSKEKYIAQLWCHKKPYPPSVPVGSSHEAAE
EYMADYYRRWRKKG*
back to top

mRNA from alignment at H-elongata_contig59188:2475..3399-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59188.13431.1 ID=mRNA_H-elongata_contig59188.13431.1|Name=mRNA_H-elongata_contig59188.13431.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=925bp|location=Sequence derived from alignment at H-elongata_contig59188:2475..3399- (Himanthalia elongata Himel1 dioecious)
CTCCAGGTTCTGGATTGGATACGAAAAAGGCATGGGTTCAAATCATTCGA TGACAAGATATTTCCTTCTCTCCGTCTCCTGCACGCTGACCCTGTGGTGT TTGAAATTGAGGATTTCTTTACGTCCGAAGAGTGTAATACGTACGTTAAA ATGTCTACGGAGGCCAAGTCAGGGCGAAGGAACAGTGGTTTCAAGTCGAT GGAGCTCAGAAGTGCAACAACAAGTTCTCAGTCTCATTTCCAGGAGCAAC GAACGTCCACCACCTGGTTCCACCACTATGCGTCGGCACCAGAATTGCTG GCCAAGGCGTCGGCGCTGCTTGGAGTGGAAGACTACCGGTTATGGGAAGA GCCACAAACGGTTCGCTATCGCCCAGGCGAGAGATTCAGCTGGCACTTGG ATGCTTTGCCACCAGCCGAGACTGGAGCATCCAAAGGTGGACAGCGCACG GCAACTGTCCTGGTGAGTCTGACCTTGATTCGTGTGGCATTGGAGTATGA AAATATTTCCTCTAAACGCCTTTATCGGCTGTTGATGTTTTATTACACAA GTACAATCCCATGTTTGGTGTCTACTAATAAACGTATTTCAGGTTTACCT TACCAACATCGACGCAAACGCTGGTGGCGCAACCGCCTTTCGAGACCTCG GTCCTCTACGTGTTCGCCCCAAGAAGGGCAAGTGCTTGGTCTTCTTCCCA TCATTCGGCGGGGAGGCGGGTTGTCCGTTTGACATCCGTACTCTGCACGC AGGAGAAGTTGTAGGACAACTTTTAGGCAAAGGGAAAAAATCAAAAGAGA AGTACATTGCACAACTTTGGTGCCACAAGAAGCCTTATCCTCCTTCTGTT CCAGTTGGGTCTTCGCACGAGGCGGCCGAGGAGTACATGGCTGATTATTA CAGACGGTGGAGAAAGAAAGGGTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig59188:2475..3399-

>mRNA_H-elongata_contig59188.13431.1 ID=mRNA_H-elongata_contig59188.13431.1|Name=mRNA_H-elongata_contig59188.13431.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1590bp|location=Sequence derived from alignment at H-elongata_contig59188:2475..3399- (Himanthalia elongata Himel1 dioecious)
CTCCAGGTTCTGGATTGGATACGAAAAAGGCATGGGTTCAAATCATTCGA
TGACAAGATATTTCCTTCTCTCCGTCTCCTGCACGCTGACCCTGTGGTGT
TTGAAATTGAGGATTTCTTTACGTCCGAAGAGTGTAATACGTACGTTAAA
ATGTCTACGGAGGCCAAGTCAGGGCGAAGGAACAGTGGTTTCAAGTCGAT
GGAGCTCAGAAGTGCAACAACAAGTTCTCAGTCTCATTTCCAGGAGCAAC
GAACGTCCACCACCTGGTTCCACCACTATGCGTCGGCACCAGAATTGCTG
GCCAAGGCGTCGGCGCTGCTTGGAGTGGAAGACTACCGGTTATGGGAAGA
GCCACAAACGGTTCGCTATCGCCCAGGCGAGAGATTCAGCTGGCACTTGG
ATGCTTTGCCACCAGCCGAGACTGGAGCATCCAAAGGTGGACAGCGCACG
GCAACTGTCCTGCTCCAGGTTCTGGATTGGATACGAAAAAGGCATGGGTT
CAAATCATTCGATGACAAGATATTTCCTTCTCTCCGTCTCCTGCACGCTG
ACCCTGTGGTGTTTGAAATTGAGGATTTCTTTACGTCCGAAGAGTGTAAT
ACGTACGTTAAAATGTCTACGGAGGCCAAGTCAGGGCGAAGGAACAGTGG
TTTCAAGTCGATGGAGCTCAGAAGTGCAACAACAAGTTCTCAGTCTCATT
TCCAGGAGCAACGAACGTCCACCACCTGGTTCCACCACTATGCGTCGGCA
CCAGAATTGCTGGCCAAGGCGTCGGCGCTGCTTGGAGTGGAAGACTACCG
GTTATGGGAAGAGCCACAAACGGTTCGCTATCGCCCAGGCGAGAGATTCA
GCTGGCACTTGGATGCTTTGCCACCAGCCGAGACTGGAGCATCCAAAGGT
GGACAGCGCACGGCAACTGTCCTGGTTTACCTTACCAACATCGACGCAAA
CGCTGGTGGCGCAACCGCCTTTCGAGACCTCGGTCCTCTACGTGTTCGCC
CCAAGAAGGGCAAGTGCTTGGTCTTCTTCCCATCATTCGGCGGGGAGGCG
GGTTGTCCGTTTGACATCCGTACTCTGCACGCAGGAGAAGTTGTAGGACA
ACTTTTAGGCAAAGGGAAAAAATCAAAAGAGAAGTACATTGCACAACTTT
GGTGCCACAAGAAGCCTTATCCTCCTTCTGTTCCAGTTGGGTCTTCGCAC
GAGGCGGCCGAGGAGTACATGGCTGATTATTACAGACGGTGGAGAAAGAA
AGGGTAAGTTTACCTTACCAACATCGACGCAAACGCTGGTGGCGCAACCG
CCTTTCGAGACCTCGGTCCTCTACGTGTTCGCCCCAAGAAGGGCAAGTGC
TTGGTCTTCTTCCCATCATTCGGCGGGGAGGCGGGTTGTCCGTTTGACAT
CCGTACTCTGCACGCAGGAGAAGTTGTAGGACAACTTTTAGGCAAAGGGA
AAAAATCAAAAGAGAAGTACATTGCACAACTTTGGTGCCACAAGAAGCCT
TATCCTCCTTCTGTTCCAGTTGGGTCTTCGCACGAGGCGGCCGAGGAGTA
CATGGCTGATTATTACAGACGGTGGAGAAAGAAAGGGTAA
back to top