mRNA_H-elongata_contig59188.13431.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig59188.13431.1 vs. uniprot
Match: A0A6H5KGF5_9PHAE (Fe2OG dioxygenase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KGF5_9PHAE) HSP 1 Score: 410 bits (1055), Expect = 1.250e-141 Identity = 200/264 (75.76%), Postives = 223/264 (84.47%), Query Frame = 1
Query: 1 LQVLDWIRKRHGFKSFDDKIFPSLRLLHADPVVFEIEDFFTSEECNTYVKMSTEAKSGRRNSGFKSMELRSATTSSQSHFQEQRTSTTWFHHYASAPELLAKASALLGVEDYRLWEEPQTVRYRPGERFSWHLDALPPAETGASKGGQRTATVLVYLTNIDANAGGATAFRDLGPLRVRPKKGKCLVFFPSFGGEAGCPFDIRTLHAGEVVGQLLGKGKKSKEKYIAQLWCHKKPYPPSVPVGSSHEAAEEYMADYYRRWRKKG 792
++V D IR+RHGF+ FD+K+FP +RLLHADPVVFE+E FFT +EC+ Y+ MST KSGRR G EL+SATTSSQ Q+ TSTTWFHHYASAPEL+AKAS LLGV+DY WEEPQTVRYRPGERF+WHLDALPP+E GASKGGQRTATVLVYLTN+ AN GGATAFRDLGPLRVRPKKGKCLVFFPSFGGEAG PFD R LHAGEVVGQ G K+KEKYIAQLWCHKKPYPPSVP GSSHEAAE+ + DY RR+ + G
Sbjct: 98 VEVADRIRERHGFEHFDEKLFPGIRLLHADPVVFEVEGFFTPQECDAYIAMSTLKKSGRRKGGLAPTELQSATTSSQC--QQXXTSTTWFHHYASAPELVAKASLLLGVDDYSKWEEPQTVRYRPGERFNWHLDALPPSECGASKGGQRTATVLVYLTNMHANGGGATAFRDLGPLRVRPKKGKCLVFFPSFGGEAGSPFDSRVLHAGEVVGQ----GNKAKEKYIAQLWCHKKPYPPSVPEGSSHEAAEKPIVDYARRFAEAG 355
BLAST of mRNA_H-elongata_contig59188.13431.1 vs. uniprot
Match: D7G1H9_ECTSI (Fe2OG dioxygenase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1H9_ECTSI) HSP 1 Score: 251 bits (641), Expect = 5.290e-79 Identity = 135/256 (52.73%), Postives = 166/256 (64.84%), Query Frame = 1
Query: 58 IFPSLRLLHADPVVFEIEDFFTSEECNTYVKMSTEAKSGRRNS------------GFKSMELRSATTSSQSHFQEQRTSTTWFHHYASAPELLAKASALLGV--EDYRLWEEPQTVRYRPGERFSWHLDALPPAETGASKGGQRTATVLVYLTNIDANAGGATAFRDLGPLRVRPKKGKCLVFFPSFGGEAGCPFDIRTLHAGEVVGQLLGKGKKSKEKYIAQLWCHKKPYPPSVPVGSSHEAAEEYMADYYRRWR 783
+FP LRLLHA+P V + DFFT EEC+ Y+ S G RSAT + QRTSTTWFH +++ PEL+AKASAL+GV E+ R WEE QTVRYRPGE+F+WHLDALPPA AS+GGQR AT+LVYLT + GGATAFRDLGPLRVRP+KG L+FFPS GG CPFDIRTLHAGEVV + ++K+IAQLW + Y P+VP + HE A +A++ + W+
Sbjct: 100 LFPGLRLLHAEPPVIGVSDFFTDEECDEYISRSVSPPXXXXXXXXXXXXXXXXXXGSGPHMQRSATLGADVDAVAQRTSTTWFHRFSAVPELMAKASALVGVPFEEGR-WEEAQTVRYRPGEKFTWHLDALPPAPDLASRGGQRIATLLVYLTEMPEGDGGATAFRDLGPLRVRPRKGSALLFFPSLGGAPDCPFDIRTLHAGEVV-----RPGAEQDKWIAQLWLRESRYTPTVPKQNRHEHAAAVVAEFDKIWQ 349
BLAST of mRNA_H-elongata_contig59188.13431.1 vs. uniprot
Match: A0A6H5L0Y5_9PHAE (Fe2OG dioxygenase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Y5_9PHAE) HSP 1 Score: 251 bits (640), Expect = 3.090e-76 Identity = 135/260 (51.92%), Postives = 166/260 (63.85%), Query Frame = 1
Query: 58 IFPSLRLLHADPVVFEIEDFFTSEECNTYVKMSTEAKSGRRNSGFKSMEL----------------RSATTSSQSHFQEQRTSTTWFHHYASAPELLAKASALLGV--EDYRLWEEPQTVRYRPGERFSWHLDALPPAETGASKGGQRTATVLVYLTNIDANAGGATAFRDLGPLRVRPKKGKCLVFFPSFGGEAGCPFDIRTLHAGEVVGQLLGKGKKSKEKYIAQLWCHKKPYPPSVPVGSSHEAAEEYMADYYRRWR 783
+FP LRLLHA+P V + DFFT EEC+ Y+ S RSAT + QRTSTTWFH +++ PEL+AKASAL+GV E+ R WEE QTVRYRPGE+F+WHLDALPPA ASKGGQR AT+LVYLT + GGATAFRDLGPLRVRP+KG L+FFPS GG CPFDIRTLHAGEVV + ++K+IAQLW ++ Y P+VP + HE A +A++ + W+
Sbjct: 322 LFPGLRLLHAEPPVIGVSDFFTDEECDEYISRSVSPPXXXXXXXXXXXXXXXXXXXXXXXXGPHMQRSATLGADVDAVAQRTSTTWFHRFSAVPELMAKASALVGVPFEEGR-WEEAQTVRYRPGEKFTWHLDALPPAPDLASKGGQRIATLLVYLTEMPEGDGGATAFRDLGPLRVRPRKGSALLFFPSLGGAPDCPFDIRTLHAGEVV-----RPGAEQDKWIAQLWLRERRYTPTVPKQNRHEHAASAVAEFDKIWQ 575
BLAST of mRNA_H-elongata_contig59188.13431.1 vs. uniprot
Match: K0SVE6_THAOC (Fe2OG dioxygenase domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SVE6_THAOC) HSP 1 Score: 240 bits (613), Expect = 2.650e-73 Identity = 124/243 (51.03%), Postives = 158/243 (65.02%), Query Frame = 1
Query: 61 FPSLRLLHADPVVFEIEDFFTSEECNTYVKMSTEAKSGRRNSGFKSMEL---RSATTSSQSHFQEQRTSTTWFHHYASAPELLAKASALLGVEDYRLWEEPQTVRYRPGERFSWHLDALPP-AETGASKGGQRTATVLVYLTNIDANAGGATAFRDLG---PLRVRPKKGKCLVFFPSFGGEAGCPFDIRTLHAGEVVGQLLGKGKKSKEKYIAQLWCHKKPYPPSVPVGSSHEAAEEYMADY 768
F R+LH DP+V ++DFFTSEEC+ YV+MS +A++ + L +S T S + QRTSTTWFHHYA PEL+A+A+ LLG+ +EEPQTVRYR E+F+WHLDAL P +S GQR +T+LVYLT++ + GGAT FRDLG PL+VRPKKG L+FFPS GG CPFDIRTLH GE VG+ EK+IAQLW ++ Y P+ P GS H A + +Y
Sbjct: 229 FEQFRVLHVDPMVIAVDDFFTSEECDKYVQMSIDAENNQDQEAGALQPLLLGQSQTVGKDSRSKAQRTSTTWFHHYAGVPELMARAARLLGLPGISRFEEPQTVRYRRSEKFTWHLDALSPDVANDSSSAGQRVSTLLVYLTDLKSEEGGATMFRDLGGDGPLKVRPKKGSALLFFPSAGGIPDCPFDIRTLHCGEAVGE-----DAPNEKWIAQLWLRQRDYTPTAPAGSEHRKATVAIQEY 466
BLAST of mRNA_H-elongata_contig59188.13431.1 vs. uniprot
Match: A0A7S2KCF3_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KCF3_9STRA) HSP 1 Score: 238 bits (608), Expect = 5.930e-73 Identity = 122/241 (50.62%), Postives = 161/241 (66.80%), Query Frame = 1
Query: 61 FPSLRLLHADPVVFEIEDFFTSEECNTYVKMSTEAKSGRRNSGFKSMELRSATTSSQSHFQEQRTSTTWFHHYASAPELLAKASALLGVEDYRLWEEPQTVRYRPGERFSWHLDALPPAETGASKGGQRTATVLVYLTNIDANAGGATAFRDLGP-----LRVRPKKGKCLVFFPSFGGEAGCPFDIRTLHAGEVVGQLLGKGKKSKEKYIAQLWCHKKPYPPSVPVGSSHEAAEEYMADY 768
F R+LH DP+V ++DFFT EEC+ Y+ MS + +G ++ ++ RS T + + QRTSTTWFHHY + PEL+AK+S L G++D ++EEPQTVRY+P ++F+WHLDAL P SKGGQRTAT+LVYLT++ GGAT FRDLGP L+V+PKKG L+FFP+ GG PFDIRTLHAGEVV +K+IAQLW + Y P+VP + H AA E ++ Y
Sbjct: 202 FDKFRVLHIDPLVIAVDDFFTHEECDKYIAMS-DPTAGNKDGD--AVMTRSMTVGKDAAAKSQRTSTTWFHHYKNVPELMAKSSRLFGLDDIGVFEEPQTVRYQPDQKFTWHLDALAPGSENISKGGQRTATLLVYLTDLGPEDGGATTFRDLGPAEGEPLKVQPKKGSALLFFPAAGGIPNTPFDIRTLHAGEVVS-----ADCKSDKWIAQLWLREDSYEPTVPPENVHAAATEPISQY 434
BLAST of mRNA_H-elongata_contig59188.13431.1 vs. uniprot
Match: A0A7S2KB24_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KB24_9STRA) HSP 1 Score: 238 bits (608), Expect = 1.110e-72 Identity = 129/259 (49.81%), Postives = 161/259 (62.16%), Query Frame = 1
Query: 61 FPSLRLLHADPVVFEIEDFFTSEECNTYVKMSTEAKSGRRNSGFKSMEL-------------RSATTSSQSHFQEQRTSTTWFHHYASAPELLAKASALLGVEDYRLWEEPQTVRYRPGERFSWHLDALPPAETGASKG-GQRTATVLVYLTNIDANAGGATAFRDLG---------PLRVRPKKGKCLVFFPSFGGEAGCPFDIRTLHAGEVVGQLLGKGKKSKEKYIAQLWCHKKPYPPSVPVGSSHEAAEEYMADY 768
F R+LH DP+V I+DFFT+EEC+ YV++S +A+ + NS E +S T S + QRTSTTWFH+Y PEL+AKAS LLG+E +EEPQTVRYR E+F+WHLDAL P E G GQR AT+LVYLT++ A +GGAT FRDLG PL+VRPKKG L+FFPS GG G PFDIRTLH GE V + EK+IAQLW ++ Y P+ PVG+SH A + + Y
Sbjct: 204 FEKFRVLHTDPMVLAIDDFFTNEECDKYVQISIDAEKQQTNSAAAGDETTQEETALQPMLLGQSQTVGKDSRSKAQRTSTTWFHYYKGVPELMAKASRLLGLEGIDRFEEPQTVRYRRNEKFTWHLDALSPEEANNPSGSGQRIATLLVYLTDVPAGSGGATMFRDLGGNNGAEDSQPLKVRPKKGSALLFFPSAGGIPGAPFDIRTLHCGEAVAE-----DAENEKWIAQLWLRQRGYEPTAPVGNSHGDASDEIGRY 457
BLAST of mRNA_H-elongata_contig59188.13431.1 vs. uniprot
Match: A0A7S1ZRX7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZRX7_9STRA) HSP 1 Score: 231 bits (589), Expect = 2.640e-72 Identity = 117/242 (48.35%), Postives = 159/242 (65.70%), Query Frame = 1
Query: 61 FPSLRLLHADPVVFEIEDFFTSEECNTYVKMSTEAKSGRRNSGFKSMEL-RSATTSSQSHFQEQRTSTTWFHHYASAPELLAKASALLGVEDYRLWEEPQTVRYRPGERFSWHLDALPPAETGASKGGQRTATVLVYLTNIDANAGGATAFRDLG-----PLRVRPKKGKCLVFFPSFGGEAGCPFDIRTLHAGEVVGQLLGKGKKSKEKYIAQLWCHKKPYPPSVPVGSSHEAAEEYMADY 768
F R+LH DP+V ++DF TS+EC+T V ++ K + N+ M++ +S T + + QRTSTTWFHHY P+L+AKAS LLG+++ WEEPQTVRYR E+F+WHLDAL P++ A GGQR AT++VYL ++ +GG+T FRDLG PL+V PKKG LVFFP+ GG PFDIRTLHAGE V + +K+IAQLW + Y P+ P G++H AA + ++ Y
Sbjct: 26 FEKFRVLHVDPMVLCVDDFLTSDECDTLVALTDNPKYDK-NANTAPMKIGQSKTVGKDMYSKSQRTSTTWFHHYRGLPQLMAKASRLLGLDNIDRWEEPQTVRYRRSEKFTWHLDALGPSDELAKSGGQRVATLIVYLADLPEGSGGSTMFRDLGGESGEPLKVHPKKGSALVFFPAAGGIPNVPFDIRTLHAGEAVSD-----ESEDDKWIAQLWLRETKYTPTAPPGNTHAAATDAISKY 261
BLAST of mRNA_H-elongata_contig59188.13431.1 vs. uniprot
Match: A0A7S2N1B0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N1B0_9STRA) HSP 1 Score: 231 bits (588), Expect = 8.710e-72 Identity = 118/241 (48.96%), Postives = 156/241 (64.73%), Query Frame = 1
Query: 61 FPSLRLLHADPVVFEIEDFFTSEECNTYVKMSTEAKSGRRNSGFKSMEL-RSATTSSQSHFQEQRTSTTWFHHYASAPELLAKASALLGVEDYRLWEEPQTVRYRPGERFSWHLDALPPAETGASKGGQRTATVLVYLTNIDANAGGATAFRDLG-----PLRVRPKKGKCLVFFPSFGGEAGCPFDIRTLHAGEVVGQLLGKGKKSKEKYIAQLWCHKKPYPPSVPVGSSHEAAEEYMAD 765
F R+LH DP++ I+DF T EC+TY+ +++ K + N+ ME+ +S T + + QRTSTTWFHHY L+AKAS LLG++ WEEPQTVRYR E+F+WHLDAL P+E GGQR AT+LVYL ++ GG+T FRDLG PL+V+PKKG L+FFP+ GG PFDIRTLHAGE V + +K+IAQLW + Y P+ P G+SHEAA E +++
Sbjct: 57 FTKFRILHTDPMLLSIDDFLTPTECDTYISLTSNPKYDK-NANTAPMEIGQSKTVGKDMYSKSQRTSTTWFHHYRGMAGLMAKASRLLGLKGIERWEEPQTVRYRRSEKFTWHLDALAPSEELTKAGGQRVATLLVYLADLPDGCGGSTMFRDLGGESGEPLKVQPKKGSALLFFPAAGGIPNVPFDIRTLHAGEAVSD-----ESDDDKWIAQLWLREHVYTPTAPPGNSHEAAVEAVSE 291
BLAST of mRNA_H-elongata_contig59188.13431.1 vs. uniprot
Match: A0A7S4QXQ4_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QXQ4_9STRA) HSP 1 Score: 231 bits (589), Expect = 4.970e-71 Identity = 117/242 (48.35%), Postives = 159/242 (65.70%), Query Frame = 1
Query: 61 FPSLRLLHADPVVFEIEDFFTSEECNTYVKMSTEAKSGRRNSGFKSMEL-RSATTSSQSHFQEQRTSTTWFHHYASAPELLAKASALLGVEDYRLWEEPQTVRYRPGERFSWHLDALPPAETGASKGGQRTATVLVYLTNIDANAGGATAFRDLG-----PLRVRPKKGKCLVFFPSFGGEAGCPFDIRTLHAGEVVGQLLGKGKKSKEKYIAQLWCHKKPYPPSVPVGSSHEAAEEYMADY 768
F R+LH DP+V ++DF TS+EC+T V ++ K + N+ M++ +S T + + QRTSTTWFHHY P+L+AKAS LLG+++ WEEPQTVRYR E+F+WHLDAL P++ A GGQR AT++VYL ++ +GG+T FRDLG PL+V PKKG LVFFP+ GG PFDIRTLHAGE V + +K+IAQLW + Y P+ P G++H AA + ++ Y
Sbjct: 123 FEKFRVLHVDPMVLCVDDFLTSDECDTLVALTDNPKYDK-NANTAPMKIGQSKTVGKDMYSKSQRTSTTWFHHYRGLPQLMAKASRLLGLDNIDRWEEPQTVRYRRSEKFTWHLDALGPSDELAKSGGQRVATLIVYLADLPEGSGGSTMFRDLGGESGEPLKVHPKKGSALVFFPAAGGIPNVPFDIRTLHAGEAVSD-----ESEDDKWIAQLWLRETKYTPTAPPGNTHAAATDAISKY 358
BLAST of mRNA_H-elongata_contig59188.13431.1 vs. uniprot
Match: A0A7S2UAB3_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UAB3_9STRA) HSP 1 Score: 232 bits (591), Expect = 5.920e-70 Identity = 122/249 (49.00%), Postives = 153/249 (61.45%), Query Frame = 1
Query: 55 KIFPSLRLLHADPVVFEIEDFFTSEECNTYVKMSTEAKSGRRNSGFKSMEL------RSATTSSQSHFQEQRTSTTWFHHYASAPELLAKASALLGVEDYRLWEEPQTVRYRPGERFSWHLDALPPAETGASKGGQRTATVLVYLTNIDANAGGATAFRDLG-----PLRVRPKKGKCLVFFPSFGGEAGCPFDIRTLHAGEVVGQLLGKGKKSKEKYIAQLWCHKKPYPPSVPVGSSHEAAEEYMADY 768
K F R+LH DP+V ++DFFT EEC+ + ST N+ + L +S T S + QRTSTTWFHHYA PEL+AKA L+G+ D +EEPQTVRYR E F+WHLDAL P A KGGQR AT+LVYLT++ GGAT FRDLG PL+VRPKKG L+FFP+ GG P D+RTLH GE V ++K+IAQLW + PY P+ P G+SH +A ++DY
Sbjct: 233 KPFSKFRVLHVDPMVLCVDDFFTPEECDALIARSTTTVITADNNEKEGTTLLPMKIGQSKTVGKDSRARAQRTSTTWFHHYAGVPELMAKACRLMGINDISAFEEPQTVRYRRTEHFTWHLDALAPTPELADKGGQRCATLLVYLTDLSEKDGGATMFRDLGGSDGEPLKVRPKKGSALLFFPAAGGIPSVPLDLRTLHCGEAVAS-----DAEQDKWIAQLWLRETPYTPTAPPGNSHASASSPISDY 476 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59188.13431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig59188.13431.1 >prot_H-elongata_contig59188.13431.1 ID=prot_H-elongata_contig59188.13431.1|Name=mRNA_H-elongata_contig59188.13431.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=265bp LQVLDWIRKRHGFKSFDDKIFPSLRLLHADPVVFEIEDFFTSEECNTYVKback to top mRNA from alignment at H-elongata_contig59188:2475..3399- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig59188.13431.1 ID=mRNA_H-elongata_contig59188.13431.1|Name=mRNA_H-elongata_contig59188.13431.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=925bp|location=Sequence derived from alignment at H-elongata_contig59188:2475..3399- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig59188:2475..3399- >mRNA_H-elongata_contig59188.13431.1 ID=mRNA_H-elongata_contig59188.13431.1|Name=mRNA_H-elongata_contig59188.13431.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1590bp|location=Sequence derived from alignment at H-elongata_contig59188:2475..3399- (Himanthalia elongata Himel1 dioecious)back to top |