mRNA_H-elongata_contig58978.13401.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig58978.13401.1 vs. uniprot
Match: D7G0V4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0V4_ECTSI) HSP 1 Score: 345 bits (886), Expect = 2.640e-105 Identity = 189/303 (62.38%), Postives = 219/303 (72.28%), Query Frame = 1
Query: 25 STQDIRPSPTPSEELQRVMLSLPRGDWPEIFHTLNSVRRLATHHAPLLLSSQSNLHALVRDVLGQVENLRSQARAHGCCLRATHVAKNSLIALADIWRGFRDSVDPELPMVCPVLVKKMADKVEFLAEAARECVDEVVATASNTRALSAFLACGNHRSPVVRAKSALAILLCVRRRCADVGGRTT-------------------------GPGH---MGPREIDRVLTIVSKFLQ---------ASDGNQETRLHAKSLVALLLDAGEVDRARLHQELPPPILERLQRDLFNSSLPCGLGFTS 822
+ +DIRPSP PS+ELQR M SLPR WPEIFHTLNSVRRLATHH PLL SQS+LHALVRDVLGQ ENLRSQ VAKN+L+ LAD+WRG D++DPELPMVCP+LVKKMADKV+FLAEAARECVDEVVATA+ +RALSAFLACG+HRSP VRAKSALA+LLCVRRRC RT G GH MG RE+DR+L+ + +FLQ + DGNQETR HAK++V +L++ GEV ARL +E+PPPILERLQR+L NSSLP G GFT+
Sbjct: 1529 TAEDIRPSPNPSQELQRAMASLPRDGWPEIFHTLNSVRRLATHHTPLL-GSQSHLHALVRDVLGQSENLRSQ------------VAKNALLTLADLWRGLGDTLDPELPMVCPILVKKMADKVDFLAEAARECVDEVVATATESRALSAFLACGSHRSPAVRAKSALAVLLCVRRRCCHPTSRTAPSPLSGAASSRRSGVRIDKRNGGGGGAGHAGRMGAREMDRLLSALPRFLQRGIVLRGSVSMDGNQETRHHAKAVVTVLMNTGEVGEARLRREIPPPILERLQRELLNSSLPSGPGFTA 1818
BLAST of mRNA_H-elongata_contig58978.13401.1 vs. uniprot
Match: A0A6H5L523_9PHAE (CLASP_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L523_9PHAE) HSP 1 Score: 308 bits (790), Expect = 2.020e-92 Identity = 174/294 (59.18%), Postives = 199/294 (67.69%), Query Frame = 1
Query: 25 STQDIRPSPTPSEELQRVMLSLPRGDWPEIFHTLNSVRRLATHHAPLLLSSQSNLHALVRDVLGQVENLRSQARAHGCCLRATHVAKNSLIALADIWRGFRDSVDPELPMVCPVLVKKMADKVEFLAEAARECVDEVVATASNTRALSAFLACGNHRSPVVRAKSALAILLCVRRRCADVGGRTT-------------------------GPGH---MGPREIDRVLTIVSKFLQASDGNQETRLHAKSLVALLLDAGEVDRARLHQELPPPILERLQRDLFNSSLPCGLGFTS 822
+ +DIRPSP PS+E+QR M SLPR WPEIFHTLNSVRRLATHH+PLL SQS+LHALVRDVLGQ ENLRSQ VAKN+L+ LAD+WRG D++DPELPMVCP+LVKKMADKVEFLAEAARECVDEVVATA+ +RALSAFL CG+HRSP VRAKSALA+LLCVRRR T G GH MG RE+DR+L+ + +FLQ GEVD ARL +E+PPPILERLQR+L N SLP G GFT+
Sbjct: 1535 TAEDIRPSPNPSQEMQRAMASLPRDGWPEIFHTLNSVRRLATHHSPLL-GSQSHLHALVRDVLGQSENLRSQ------------VAKNALLTLADLWRGLGDTLDPELPMVCPILVKKMADKVEFLAEAARECVDEVVATATESRALSAFLTCGSHRSPAVRAKSALAVLLCVRRRYCHPTSETAPLQLSGAASSRRSGVRIDKRNGGGGGAGHAGSMGAREMDRLLSALPRFLQ----------------------GEVDEARLRREIPPPILERLQRELLNFSLPSGPGFTA 1793
BLAST of mRNA_H-elongata_contig58978.13401.1 vs. uniprot
Match: A0A7S3YBP5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YBP5_HETAK) HSP 1 Score: 178 bits (452), Expect = 1.570e-51 Identity = 104/261 (39.85%), Postives = 151/261 (57.85%), Query Frame = 1
Query: 28 TQDIRPSPTPSEELQRVMLSLPRGDWPEIFHTLNSVRRLATHHAPLLLSSQSNLHALVRDVLGQVENLRSQARAHGCCLRATHVAKNSLIALADIWRGFRDSVDPELPMVCPVLVKKMADKVEFLAEAARECVDEVVATASNTRALSAFLACGNHRSPVVRAKSALAILLCVRRRCADVGGRTTGPGHMGPREIDRVLTIVSKFLQASDGNQETRLHAKSLVALLLDAGEVDRARLHQELPPPILERLQRDLFNSSLPCGL 810
T DIRPSP PS ELQR + +LP G+WPE+FHTLN+VRRL HH LL + +LH +VRDVL Q ENLRS V KN+++ LAD+WRG + DPEL +V PVL+K++A+ FL + A E + +V A+ RAL AF+ C ++P +RA++A+ + V+R +G R +E+ ++L + FLQ D N +TR + + L+ LL AG L + +P +L++ F + GL
Sbjct: 13 TDDIRPSPNPSHELQRTLRALPNGEWPEVFHTLNAVRRLGLHHGALL---EPHLHGVVRDVLKQSENLRSA------------VKKNAILTLADLWRGLGPTCDPELALVAPVLIKRVAESNGFLIDTAEEAIATIVDRATPRRALEAFICCSRSKNPQIRAETAIVVYKLVQR----MGNRL----RPNSKEVAKILEEMPLFLQ--DANPKTRTYGRHLLHHLLGAGLATEEELGRAVPAHVLKKALASTFAAGGHVGL 248
BLAST of mRNA_H-elongata_contig58978.13401.1 vs. uniprot
Match: A0A835ZHW3_9STRA (TOG domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHW3_9STRA) HSP 1 Score: 155 bits (392), Expect = 4.170e-39 Identity = 107/280 (38.21%), Postives = 137/280 (48.93%), Query Frame = 1
Query: 34 DIRPSPTPSEELQRVMLSLPRGDWPEIFHTLNSVRRLATHHAPLL-----------LSSQSNLHALVRDVLGQVENLRSQARAHGCCLRATH-----------------------------VAKNSLIALADIWRGFRDSVDPELPMVCPVLVKKMADKVEFLAEAARECVDEV---------------VATASNTRALSAFLACGNHRSPVVRAKSALAILLCVRRRCADVGGRTTGPGHMGPREIDRVLTIVSKFLQASDGNQETRLHAKSLVALLLD 708
D+RPSP EL R + SL R DWPEIFHTLN+ RRLA HHAPL+ L NL + C +T VAKN+L+ L D+W+G ++DPELP+V PVL+KK DKV+FL +AA V++V VA A++ RALSAFL C R+ +RAK+A +L CVRR VG R + RE +RVL + FLQ DG+QETR H K+L LL+
Sbjct: 1251 DLRPSPNAKAELARALASLARDDWPEIFHTLNAARRLARHHAPLVEAHARELTRDVLRHVDNLRSQXXXXXXXXXXXXXXXXXXXXCSISTSISDVPLVSRXXXXXXXXXXXXXXXXXXXXVAKNALLTLGDLWKGLGRALDPELPLVAPVLIKKYTDKVDFLRQAAEGAVEDVXXXXXXXXXXXXXXXVANATDVRALSAFLGCSAARAAPLRAKAAATVLKCVRR----VGARLSAC-----REAERVLQALPLFLQ--DGHQETRAHGKALTRYLLE 1519
BLAST of mRNA_H-elongata_contig58978.13401.1 vs. uniprot
Match: A0A4D9CTV7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CTV7_9STRA) HSP 1 Score: 106 bits (264), Expect = 3.490e-22 Identity = 77/246 (31.30%), Postives = 121/246 (49.19%), Query Frame = 1
Query: 37 IRPSPTPSEELQRVMLSLPRGDWPEIFHTLNSVRRLATHHAPLLLS-SQSNLHALVRDVLGQVENLRSQARAHGCCLRATHVAKNSLIALADIW-------------RGFRDSVDPEL-----PMVCPVLVKKMADKVEFLAEAARECVDEVVA-TASNTRALSAFLACGNHRSPVVRAKSALAILLCVRRRCADVG--GRTTGPGHMGP--REIDRVLTIVSKFLQASDGNQETRLHAKSLVALL 702
+RP P P++ L ++ SLP DWPE FH+L ++RRLA HH +L + S +L L+ ++ ++NLRS VAKN+L+ LADIW +G + +DP L P++ P L+++ D FLA+ A + V+ T R LSA L H+ P+ R + A + C+ R A TG G +GP + + R + A+DG++ ++ +L A L
Sbjct: 481 LRPLPDPNQSLTHLVTSLPTADWPENFHSLTTIRRLALHHPDILFALSPPSLRLLLVELFRLIDNLRSA------------VAKNALLTLADIWSHAGRAPKPKHSEKGSVEGIDPRLLENALPILVPPLLRRCCDTSGFLAQTAEAAFEAVIHHTPDMARLLSALLPMAAHKHPLARRRVATVVRQCLSRLAATSSFVSPVTGAGSVGPLTKRMHRKKRA-GNAIAAADGSKNKQVGCDTLSAEL 713
BLAST of mRNA_H-elongata_contig58978.13401.1 vs. uniprot
Match: A0A8K1C562_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C562_PYTOL) HSP 1 Score: 95.5 bits (236), Expect = 1.970e-18 Identity = 66/248 (26.61%), Postives = 122/248 (49.19%), Query Frame = 1
Query: 34 DIRPSPTPSEELQRVMLSLPRGDWPEIFHTLNSVRRLATHHAPLLLSSQSNLHALVRDVLGQVENLRSQARAHGCCLRATHVAKNSLIALADIWRGFRDSVDPELPMVCPVLVKKMADKVEFLAEAARECVDEVVATASNTRALSAFLACGNHRSPVVRAKSALAILLCVRRRCADVGGRTTGPGHMGPREIDRVLTIVSKFLQASDGNQETRLHAKSLVALLLDAGEVDRARLHQELPPPILERLQR 777
+++P P ++ +++ +L DW +F LN VRRLA HH L + NLHA+V++++ QV NLRS V+KN+L+AL + + +D ++ + +L+K+ D F+ E+A ++ V+ S +R +SA R+ +R + A AI + + G +E+ ++++V K L+ D + + R AK + LL +D R+ + LP + R+ +
Sbjct: 887 ELKPLPNAKQDAAKIVQTLQNEDWEVVFEGLNLVRRLAAHHTKFL---EENLHAVVKEIVAQVPNLRSS------------VSKNALLALESMCAAYGKLLDADVDRILAILLKRCTDSNTFVCESASTAINAVITHCSTSRVVSAVSTHITSRANPIRREVARAIHHVIL---------SLGDQIQQSKELGMIMSLVGKCLE--DSSNDVRDVAKLSIGCLLADLRMDSERVKKLLPSALHPRVDQ 1108
BLAST of mRNA_H-elongata_contig58978.13401.1 vs. uniprot
Match: A0A7J7PZF7_9CHLO (Uncharacterized protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PZF7_9CHLO) HSP 1 Score: 77.4 bits (189), Expect = 2.690e-12 Identity = 79/262 (30.15%), Postives = 120/262 (45.80%), Query Frame = 1
Query: 34 DIRPSPTPSEELQRVMLSLPRG--------DWPEIFHTLNSVRRLATHHAPLLLSSQSNLHALVRDVLGQVENLRSQARAHGCCLRATHVAKNSLIALADIWRGFRDSVDPELPMVCPVLVKKM-----ADKVEFLAEAARECVDEVVATASNTRALSAFLACG-NHRSPVVRAKSALAILLCVRRRCADVGGRTTGPGHMGPREIDRVLTIVSKFLQASDGNQETRLHAKSLVALLLDAGEVDRARLHQELPPPILERLQR 777
++ P P P L+ V+ + DW L RRLA HHA +++++ H LV VL V+ LRS A+ +L L ++ S+D EL + PVL+KK A + FLA A + + +++T S RALS LACG +H+SP VR ++A A L V + G G +DR+ + FLQ +G+ +TR H K L+ + A R+ L + + + LQR
Sbjct: 699 ELAPLPDPEGTLRHVIAKCQQSNAAARKELDWQGQLEALMDARRLAAHHAEVVMAAS---HELVLAVLPAVDELRSTT------------ARVALQLLQELPAVLGRSLDRELEDIVPVLLKKAGELSTAGRDNFLAAEADKALSAILSTVSEARALSTLLACGMSHKSPHVRCRAA-AHLDEVAAGGQGLEGLLRGNSWS---LLDRLFKAAAAFLQ--EGSLDTRTHGKRLLWAVKAALHGSRSELDRLVTGVGADALQR 939
BLAST of mRNA_H-elongata_contig58978.13401.1 vs. uniprot
Match: H3HAM4_PHYRM (TOG domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HAM4_PHYRM) HSP 1 Score: 71.6 bits (174), Expect = 2.180e-10 Identity = 40/115 (34.78%), Postives = 64/115 (55.65%), Query Frame = 1
Query: 34 DIRPSPTPSEELQRVMLSLPRGDWPEIFHTLNSVRRLATHHAPLLLSSQSNLHALVRDVLGQVENLRSQARAHGCCLRATHVAKNSLIALADIWRGFRDSVDPELPMVCPVLVKK 378
+I P P ++L +++ L DW F +N+VRRLA HHA ++ S +H +V ++L QV NLRS V+KN+L+AL + F ++D E+ + PVL+K+
Sbjct: 492 EITPLMNPKQDLSKILTQLRSEDWEANFDAMNTVRRLAIHHAGMI--DLSKVHGIVAEILKQVPNLRSS------------VSKNALLALESMCSAFSRAMDSEVENIIPVLLKR 592
BLAST of mRNA_H-elongata_contig58978.13401.1 vs. uniprot
Match: A0A2P6V0D7_9CHLO (Uncharacterized protein n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V0D7_9CHLO) HSP 1 Score: 63.9 bits (154), Expect = 9.030e-8 Identity = 53/188 (28.19%), Postives = 88/188 (46.81%), Query Frame = 1
Query: 100 DWPEIFHTLNSVRRLATHHAPLLLSSQSNLHALVRDVLGQVENLRSQARAHGCCLRATHVAKNSLIALADIWRGFRDSVDPELPMVCPVLVKK-----MADKVEFLAEAARECVDEVVATASNTRALSAFLACGNHRSPVVRAKSALAILLCVR----RRCADVGGRTTGPGHMGPREIDRVLTIVSK 636
DW F L +VRRLA HHA LL+ + LHALV V V+ LRS +++ ++ + ++D EL P+L+K+ ++ + FLA A + VV + R + L C + +SP VRAK+A+ + C++ R +GG G + PR + + ++ +
Sbjct: 1205 DWQAQFEGLRNVRRLALHHAGLLIVPLT-LHALVALVAPVVDALRST------------LSRLAIAVFQSLAEALGPALDAELDAFVPLLLKRAGQISVSGRDNFLAVEADRALSAVVERCGDVRPAISLLNCLSSKSPDVRAKAAMHLDACLQLHGPRLVGGLGGTGGXXGSLLPRLLHAAVALLEE 1379 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58978.13401.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig58978.13401.1 >prot_H-elongata_contig58978.13401.1 ID=prot_H-elongata_contig58978.13401.1|Name=mRNA_H-elongata_contig58978.13401.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=274bp MHRAVTPCSTQDIRPSPTPSEELQRVMLSLPRGDWPEIFHTLNSVRRLATback to top mRNA from alignment at H-elongata_contig58978:818..3299- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig58978.13401.1 ID=mRNA_H-elongata_contig58978.13401.1|Name=mRNA_H-elongata_contig58978.13401.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2482bp|location=Sequence derived from alignment at H-elongata_contig58978:818..3299- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig58978:818..3299- >mRNA_H-elongata_contig58978.13401.1 ID=mRNA_H-elongata_contig58978.13401.1|Name=mRNA_H-elongata_contig58978.13401.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1644bp|location=Sequence derived from alignment at H-elongata_contig58978:818..3299- (Himanthalia elongata Himel1 dioecious)back to top |