mRNA_H-elongata_contig58940.13396.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig58940.13396.1
Unique NamemRNA_H-elongata_contig58940.13396.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig58940.13396.1 vs. uniprot
Match: A0A6H5KA14_9PHAE (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA14_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 2.060e-27
Identity = 54/92 (58.70%), Postives = 68/92 (73.91%), Query Frame = 1
Query:   49 MYISFTIHVCDGSTLRAIDLACSPFDEAHTAVNIAHKLKGILEKRGLNPSKCVAITMDNAANMIKAGDMLNDDSNVSMTRVSCFCHTIQLVI 324
            M+ISFTIH  DG TLR IDLAC PF+  H+  NIA +LK IL   GL+P KC  ITMDNA+NMI+AG+ L+   + ++ R+SCFCH+IQL I
Sbjct:    1 MFISFTIHFVDGETLRTIDLACRPFNVTHSGENIAKELKSILTDAGLDPKKCTGITMDNASNMIRAGNQLDASDDNNILRLSCFCHSIQLSI 92          
BLAST of mRNA_H-elongata_contig58940.13396.1 vs. uniprot
Match: A0A498M545_LABRO (Zinc finger BED domain-containing 1-like protein n=2 Tax=Labeo rohita TaxID=84645 RepID=A0A498M545_LABRO)

HSP 1 Score: 73.6 bits (179), Expect = 5.430e-13
Identity = 40/109 (36.70%), Postives = 64/109 (58.72%), Query Frame = 1
Query:    1 KFFGASTDIWTDRRGKMYISFTIH-VCDGSTLRAIDLACSPFDEAHTAVNIAHKLKGILEKRGLNPSKCVAITMDNAANMIKAGDMLNDDSNVSMTRVSCFCHTIQLVI 324
            +++  +TD+W+ R  + Y+S T+H + +   L++  L  + F E+HTA NIA  L+  +   GL+ ++ V IT DNAANM+KA D+         TR+ CF H + L I
Sbjct:  172 EYYATTTDLWSSRTTEPYMSLTVHFITEDFELKSRCLQTAFFPESHTAENIAEALREAVSAWGLDETRQVCITTDNAANMVKAADLNK------WTRLQCFGHRLHLAI 274          
BLAST of mRNA_H-elongata_contig58940.13396.1 vs. uniprot
Match: A0A6P8W1Z1_GYMAC (zinc finger BED domain-containing protein 1-like n=1 Tax=Gymnodraco acuticeps TaxID=8218 RepID=A0A6P8W1Z1_GYMAC)

HSP 1 Score: 71.6 bits (174), Expect = 5.660e-13
Identity = 42/109 (38.53%), Postives = 64/109 (58.72%), Query Frame = 1
Query:    1 KFFGASTDIWTDRRGKMYISFTIHVCDGS-TLRAIDLACSPFDEAHTAVNIAHKLKGILEKRGLNPSKCVAITMDNAANMIKAGDMLNDDSNVSMTRVSCFCHTIQLVI 324
            +++  +TD+W+ R  + YIS T+H  D   TL++  L  + F E HT+ NIA  L+  +   GL+ ++ V IT DNAANM+KA   LN+      TR+ CF H + L +
Sbjct:   55 EYYAVTTDLWSSRTTEPYISLTVHFIDEDFTLKSRCLQTAFFPENHTSENIAAGLREAVAAWGLDETRQVCITTDNAANMVKAAS-LNE-----WTRLQCFGHRLHLAV 157          
BLAST of mRNA_H-elongata_contig58940.13396.1 vs. uniprot
Match: UPI00146A3526 (zinc finger BED domain-containing protein 1-like n=1 Tax=Pseudochaenichthys georgianus TaxID=52239 RepID=UPI00146A3526)

HSP 1 Score: 71.2 bits (173), Expect = 3.330e-12
Identity = 42/109 (38.53%), Postives = 64/109 (58.72%), Query Frame = 1
Query:    1 KFFGASTDIWTDRRGKMYISFTIHVCDGS-TLRAIDLACSPFDEAHTAVNIAHKLKGILEKRGLNPSKCVAITMDNAANMIKAGDMLNDDSNVSMTRVSCFCHTIQLVI 324
            +++  +TD+W+ R  + YIS T+H  D   TL++  L  + F E HT+ NIA  L+  +   GL+ ++ V IT DNAANM+KA   LN+      TR+ CF H + L +
Sbjct:   41 EYYAVTTDLWSSRTTEPYISLTVHFIDEDFTLKSRCLQTAFFPENHTSDNIAAGLREAVAAWGLDETRQVCITTDNAANMVKAAS-LNE-----WTRLQCFGHRLHLAV 143          
BLAST of mRNA_H-elongata_contig58940.13396.1 vs. uniprot
Match: UPI000DF15BBF (zinc finger BED domain-containing protein 1-like n=1 Tax=Oreochromis niloticus TaxID=8128 RepID=UPI000DF15BBF)

HSP 1 Score: 67.8 bits (164), Expect = 3.570e-11
Identity = 38/106 (35.85%), Postives = 56/106 (52.83%), Query Frame = 1
Query:    7 FGASTDIWTDRRGKMYISFTIHVCDGSTLRAIDLACSPFDEAHTAVNIAHKLKGILEKRGLNPSKCVAITMDNAANMIKAGDMLNDDSNVSMTRVSCFCHTIQLVI 324
            F  +TD+W+ R  K Y++ TIH  +   L+      S F + HT  +IA  L+ +L+   LNP+  VAIT DN AN++KA  +          R+ CF H + L I
Sbjct:   57 FALTTDMWSSRTCKPYMTVTIHFMEDWELKTARFQTSYFPQDHTGEHIAEALQDVLKTWKLNPTGLVAITTDNGANIVKAVQLNK------WPRIQCFGHRLHLAI 156          
BLAST of mRNA_H-elongata_contig58940.13396.1 vs. uniprot
Match: A0A498NPM3_LABRO (Zinc finger BED domain-containing 1-like protein n=2 Tax=Labeo rohita TaxID=84645 RepID=A0A498NPM3_LABRO)

HSP 1 Score: 67.8 bits (164), Expect = 3.880e-11
Identity = 41/115 (35.65%), Postives = 64/115 (55.65%), Query Frame = 1
Query:    1 KFFGASTDIWTDRRGKMYISFTIH-VCDGSTLRAIDLACSPFDEAHTAVNIAHKLKGILEKR------GLNPSKCVAITMDNAANMIKAGDMLNDDSNVSMTRVSCFCHTIQLVI 324
            +++  +TD+W+ R  + Y+S T+H + +   L++  L  + F E+HTA NIA  L+     R      GL+ ++ V IT DNAANM+KA D+         TR+ CF H + L I
Sbjct:  172 EYYATTTDLWSSRTTEPYMSLTVHFITEDFELKSRCLQTAFFPESHTAENIAEALREAEALREAVSAWGLDETRQVCITTDNAANMVKAADLNK------WTRLQCFGHRLHLAI 280          
BLAST of mRNA_H-elongata_contig58940.13396.1 vs. uniprot
Match: UPI000B92FB72 (zinc finger BED domain-containing protein RICESLEEPER 3-like n=1 Tax=Myzus persicae TaxID=13164 RepID=UPI000B92FB72)

HSP 1 Score: 63.2 bits (152), Expect = 1.140e-9
Identity = 38/104 (36.54%), Postives = 56/104 (53.85%), Query Frame = 1
Query:   16 STDIWTDRRGKMYISFTIHVCDGSTL-RAIDLACSPFDEAHTAVNIAHKLKGILEKRGLNPSKCVAITMDNAANMIKAGDMLNDDSNVSMTRVSCFCHTIQLVI 324
            +TD W+      YIS T H+ +   L ++  LA    +E HTAVN+A KLK IL+   +N      IT DNA N++ A  +L  + +     V+C  H++QL I
Sbjct:   46 TTDGWSSMEQNSYISLTAHIINNEWLPKSFTLATQEMEERHTAVNLAEKLKSILDDWEINGKVSTVIT-DNAKNVVNAVKLLPLNIDNENMDVTCAAHSLQLAI 148          
BLAST of mRNA_H-elongata_contig58940.13396.1 vs. uniprot
Match: UPI000DC14DC8 (zinc finger BED domain-containing protein 1-like n=1 Tax=Melanaphis sacchari TaxID=742174 RepID=UPI000DC14DC8)

HSP 1 Score: 62.8 bits (151), Expect = 3.300e-9
Identity = 36/106 (33.96%), Postives = 59/106 (55.66%), Query Frame = 1
Query:   16 STDIWTDRRGKMYISFTIHVCDGST---LRAIDLACSPFDEAHTAVNIAHKLKGILEKRGLNPSKCVAITMDNAANMIKAGDMLNDDSNVSMTRVSCFCHTIQLVI 324
            +TD WT R  + +++ T H  D      L ++ LAC+ F+++HTA N+A  LK  +++ GL+  +   +  DNAAN+  A +  N        R+SCF H I L++
Sbjct:  200 TTDGWTSRNNESFLAVTAHFIDPDNVTELSSVLLACTSFEDSHTADNLALFLKNTVDEWGLS-QRITVVVSDNAANIKSAIEKCN------WRRLSCFAHDINLIV 298          
BLAST of mRNA_H-elongata_contig58940.13396.1 vs. uniprot
Match: A0A6J2YC96_SITOR (zinc finger BED domain-containing protein 1-like n=1 Tax=Sitophilus oryzae TaxID=7048 RepID=A0A6J2YC96_SITOR)

HSP 1 Score: 60.1 bits (144), Expect = 2.900e-8
Identity = 39/111 (35.14%), Postives = 59/111 (53.15%), Query Frame = 1
Query:    1 KFFGASTDIWTDRRGKMYISFTIH-VCDGSTLRAIDLACSPFDEA--HTAVNIAHKLKGILEKRGLNPSKCVAITMDNAANMIKAGDMLNDDSNVSMTRVSCFCHTIQLVI 324
            K+   ++D W+ R  + Y++ T H V     L++  L+  P +    HTA NI+  LK +  + G+  +K   I  DNAANM+KA D+L   S      + CF HTI LV+
Sbjct:  225 KYVAITSDSWSSRATESYLTVTCHFVSSNFELKSAVLSTKPLENGVNHTAENISCALKDLFVEWGIE-NKISGIVTDNAANMMKACDLLKKKS------LPCFAHTINLVV 328          
BLAST of mRNA_H-elongata_contig58940.13396.1 vs. uniprot
Match: A0A498MLC7_LABRO (Zinc finger BED domain-containing DAYSLEEPER-like protein n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498MLC7_LABRO)

HSP 1 Score: 57.8 bits (138), Expect = 1.810e-7
Identity = 45/132 (34.09%), Postives = 62/132 (46.97%), Query Frame = 1
Query:    1 KFFGASTDIWTDRRGKMYISFTIHVCDGST----LRAIDLACSPFDEAHTAVNIAHKLKGILEKRGLNPSKCVAITMDNAANMIKA-------------------GDMLNDDSNV-SMTRVSCFCHTIQLVI 324
            K    + DIW+DR  + Y+  T HV + ST    L A  L C  F   H++ NI+     IL+   ++      IT DNAANM KA                   G+ L+ D  + S  R+SCF H++QLVI
Sbjct:   37 KSISVTADIWSDRTMRSYLGVTAHVLNSSTSGYTLNAYLLNCRRFKWRHSSENISAAFDEILDDYNISDKVDFIIT-DNAANMKKAFKVIMADHSDDSEDEEDMVGEQLDTDFLLGSRQRLSCFAHSLQLVI 167          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58940.13396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KA14_9PHAE2.060e-2758.70Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A498M545_LABRO5.430e-1336.70Zinc finger BED domain-containing 1-like protein n... [more]
A0A6P8W1Z1_GYMAC5.660e-1338.53zinc finger BED domain-containing protein 1-like n... [more]
UPI00146A35263.330e-1238.53zinc finger BED domain-containing protein 1-like n... [more]
UPI000DF15BBF3.570e-1135.85zinc finger BED domain-containing protein 1-like n... [more]
A0A498NPM3_LABRO3.880e-1135.65Zinc finger BED domain-containing 1-like protein n... [more]
UPI000B92FB721.140e-936.54zinc finger BED domain-containing protein RICESLEE... [more]
UPI000DC14DC83.300e-933.96zinc finger BED domain-containing protein 1-like n... [more]
A0A6J2YC96_SITOR2.900e-835.14zinc finger BED domain-containing protein 1-like n... [more]
A0A498MLC7_LABRO1.810e-734.09Zinc finger BED domain-containing DAYSLEEPER-like ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58940contigH-elongata_contig58940:2377..2700 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score73.2
Seed ortholog evalue8.5e-11
Seed eggNOG ortholog7955.ENSDARP00000061379
EggNOG free text desc.hAT family C-terminal dimerisation region
EggNOG OGs39RW9@33154,3BH13@33208,3D40F@33213,48425@7711,4931H@7742,KOG1121@1,KOG1121@2759
COG Functional cat.L
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size324
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930955.9840977-CDS-H-elongata_contig58940:2376..27001622930955.9840977-CDS-H-elongata_contig58940:2376..2700Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58940 2377..2700 -
1691679639.6892934-CDS-H-elongata_contig58940:2376..27001691679639.6892934-CDS-H-elongata_contig58940:2376..2700Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58940 2377..2700 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58940.13396.1prot_H-elongata_contig58940.13396.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig58940 2377..2700 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig58940.13396.1

>prot_H-elongata_contig58940.13396.1 ID=prot_H-elongata_contig58940.13396.1|Name=mRNA_H-elongata_contig58940.13396.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp
KFFGASTDIWTDRRGKMYISFTIHVCDGSTLRAIDLACSPFDEAHTAVNI
AHKLKGILEKRGLNPSKCVAITMDNAANMIKAGDMLNDDSNVSMTRVSCF
CHTIQLVI
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mRNA from alignment at H-elongata_contig58940:2377..2700-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig58940.13396.1 ID=mRNA_H-elongata_contig58940.13396.1|Name=mRNA_H-elongata_contig58940.13396.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=324bp|location=Sequence derived from alignment at H-elongata_contig58940:2377..2700- (Himanthalia elongata Himel1 dioecious)
AAGTTCTTCGGTGCGTCGACGGATATATGGACTGACAGGCGAGGAAAGAT GTACATATCTTTTACGATCCACGTTTGCGACGGATCCACGTTGAGGGCGA TCGACCTCGCGTGTTCACCCTTCGATGAGGCACACACCGCTGTCAACATC GCCCACAAGCTGAAGGGTATACTTGAAAAAAGGGGTTTGAACCCTTCCAA GTGTGTCGCCATCACCATGGACAATGCAGCTAACATGATAAAAGCGGGAG ACATGCTCAACGACGACTCGAATGTCTCCATGACAAGGGTGTCTTGCTTC TGCCACACCATCCAACTCGTGATA
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Coding sequence (CDS) from alignment at H-elongata_contig58940:2377..2700-

>mRNA_H-elongata_contig58940.13396.1 ID=mRNA_H-elongata_contig58940.13396.1|Name=mRNA_H-elongata_contig58940.13396.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig58940:2377..2700- (Himanthalia elongata Himel1 dioecious)
AAGTTCTTCGGTGCGTCGACGGATATATGGACTGACAGGCGAGGAAAGAT
GTACATATCTTTTACGATCCACGTTTGCGACGGATCCACGTTGAGGGCGA
TCGACCTCGCGTGTTCACCCTTCGATGAGGCACACACCGCTGTCAACATC
GCCCACAAGCTGAAGGGTATACTTGAAAAAAGGGGTTTGAACCCTTCCAA
GTGTGTCGCCATCACCATGGACAATGCAGCTAACATGATAAAAGCGGGAG
ACATGCTCAACGACGACTCGAATGTCTCCATGACAAGGGTGTCTTGCTTC
TGCCACACCATCCAACTCGTGATAAAGTTCTTCGGTGCGTCGACGGATAT
ATGGACTGACAGGCGAGGAAAGATGTACATATCTTTTACGATCCACGTTT
GCGACGGATCCACGTTGAGGGCGATCGACCTCGCGTGTTCACCCTTCGAT
GAGGCACACACCGCTGTCAACATCGCCCACAAGCTGAAGGGTATACTTGA
AAAAAGGGGTTTGAACCCTTCCAAGTGTGTCGCCATCACCATGGACAATG
CAGCTAACATGATAAAAGCGGGAGACATGCTCAACGACGACTCGAATGTC
TCCATGACAAGGGTGTCTTGCTTCTGCCACACCATCCAACTCGTGATA
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