mRNA_H-elongata_contig58940.13396.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig58940.13396.1 vs. uniprot
Match: A0A6H5KA14_9PHAE (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA14_9PHAE) HSP 1 Score: 114 bits (285), Expect = 2.060e-27 Identity = 54/92 (58.70%), Postives = 68/92 (73.91%), Query Frame = 1
Query: 49 MYISFTIHVCDGSTLRAIDLACSPFDEAHTAVNIAHKLKGILEKRGLNPSKCVAITMDNAANMIKAGDMLNDDSNVSMTRVSCFCHTIQLVI 324
M+ISFTIH DG TLR IDLAC PF+ H+ NIA +LK IL GL+P KC ITMDNA+NMI+AG+ L+ + ++ R+SCFCH+IQL I
Sbjct: 1 MFISFTIHFVDGETLRTIDLACRPFNVTHSGENIAKELKSILTDAGLDPKKCTGITMDNASNMIRAGNQLDASDDNNILRLSCFCHSIQLSI 92
BLAST of mRNA_H-elongata_contig58940.13396.1 vs. uniprot
Match: A0A498M545_LABRO (Zinc finger BED domain-containing 1-like protein n=2 Tax=Labeo rohita TaxID=84645 RepID=A0A498M545_LABRO) HSP 1 Score: 73.6 bits (179), Expect = 5.430e-13 Identity = 40/109 (36.70%), Postives = 64/109 (58.72%), Query Frame = 1
Query: 1 KFFGASTDIWTDRRGKMYISFTIH-VCDGSTLRAIDLACSPFDEAHTAVNIAHKLKGILEKRGLNPSKCVAITMDNAANMIKAGDMLNDDSNVSMTRVSCFCHTIQLVI 324
+++ +TD+W+ R + Y+S T+H + + L++ L + F E+HTA NIA L+ + GL+ ++ V IT DNAANM+KA D+ TR+ CF H + L I
Sbjct: 172 EYYATTTDLWSSRTTEPYMSLTVHFITEDFELKSRCLQTAFFPESHTAENIAEALREAVSAWGLDETRQVCITTDNAANMVKAADLNK------WTRLQCFGHRLHLAI 274
BLAST of mRNA_H-elongata_contig58940.13396.1 vs. uniprot
Match: A0A6P8W1Z1_GYMAC (zinc finger BED domain-containing protein 1-like n=1 Tax=Gymnodraco acuticeps TaxID=8218 RepID=A0A6P8W1Z1_GYMAC) HSP 1 Score: 71.6 bits (174), Expect = 5.660e-13 Identity = 42/109 (38.53%), Postives = 64/109 (58.72%), Query Frame = 1
Query: 1 KFFGASTDIWTDRRGKMYISFTIHVCDGS-TLRAIDLACSPFDEAHTAVNIAHKLKGILEKRGLNPSKCVAITMDNAANMIKAGDMLNDDSNVSMTRVSCFCHTIQLVI 324
+++ +TD+W+ R + YIS T+H D TL++ L + F E HT+ NIA L+ + GL+ ++ V IT DNAANM+KA LN+ TR+ CF H + L +
Sbjct: 55 EYYAVTTDLWSSRTTEPYISLTVHFIDEDFTLKSRCLQTAFFPENHTSENIAAGLREAVAAWGLDETRQVCITTDNAANMVKAAS-LNE-----WTRLQCFGHRLHLAV 157
BLAST of mRNA_H-elongata_contig58940.13396.1 vs. uniprot
Match: UPI00146A3526 (zinc finger BED domain-containing protein 1-like n=1 Tax=Pseudochaenichthys georgianus TaxID=52239 RepID=UPI00146A3526) HSP 1 Score: 71.2 bits (173), Expect = 3.330e-12 Identity = 42/109 (38.53%), Postives = 64/109 (58.72%), Query Frame = 1
Query: 1 KFFGASTDIWTDRRGKMYISFTIHVCDGS-TLRAIDLACSPFDEAHTAVNIAHKLKGILEKRGLNPSKCVAITMDNAANMIKAGDMLNDDSNVSMTRVSCFCHTIQLVI 324
+++ +TD+W+ R + YIS T+H D TL++ L + F E HT+ NIA L+ + GL+ ++ V IT DNAANM+KA LN+ TR+ CF H + L +
Sbjct: 41 EYYAVTTDLWSSRTTEPYISLTVHFIDEDFTLKSRCLQTAFFPENHTSDNIAAGLREAVAAWGLDETRQVCITTDNAANMVKAAS-LNE-----WTRLQCFGHRLHLAV 143
BLAST of mRNA_H-elongata_contig58940.13396.1 vs. uniprot
Match: UPI000DF15BBF (zinc finger BED domain-containing protein 1-like n=1 Tax=Oreochromis niloticus TaxID=8128 RepID=UPI000DF15BBF) HSP 1 Score: 67.8 bits (164), Expect = 3.570e-11 Identity = 38/106 (35.85%), Postives = 56/106 (52.83%), Query Frame = 1
Query: 7 FGASTDIWTDRRGKMYISFTIHVCDGSTLRAIDLACSPFDEAHTAVNIAHKLKGILEKRGLNPSKCVAITMDNAANMIKAGDMLNDDSNVSMTRVSCFCHTIQLVI 324
F +TD+W+ R K Y++ TIH + L+ S F + HT +IA L+ +L+ LNP+ VAIT DN AN++KA + R+ CF H + L I
Sbjct: 57 FALTTDMWSSRTCKPYMTVTIHFMEDWELKTARFQTSYFPQDHTGEHIAEALQDVLKTWKLNPTGLVAITTDNGANIVKAVQLNK------WPRIQCFGHRLHLAI 156
BLAST of mRNA_H-elongata_contig58940.13396.1 vs. uniprot
Match: A0A498NPM3_LABRO (Zinc finger BED domain-containing 1-like protein n=2 Tax=Labeo rohita TaxID=84645 RepID=A0A498NPM3_LABRO) HSP 1 Score: 67.8 bits (164), Expect = 3.880e-11 Identity = 41/115 (35.65%), Postives = 64/115 (55.65%), Query Frame = 1
Query: 1 KFFGASTDIWTDRRGKMYISFTIH-VCDGSTLRAIDLACSPFDEAHTAVNIAHKLKGILEKR------GLNPSKCVAITMDNAANMIKAGDMLNDDSNVSMTRVSCFCHTIQLVI 324
+++ +TD+W+ R + Y+S T+H + + L++ L + F E+HTA NIA L+ R GL+ ++ V IT DNAANM+KA D+ TR+ CF H + L I
Sbjct: 172 EYYATTTDLWSSRTTEPYMSLTVHFITEDFELKSRCLQTAFFPESHTAENIAEALREAEALREAVSAWGLDETRQVCITTDNAANMVKAADLNK------WTRLQCFGHRLHLAI 280
BLAST of mRNA_H-elongata_contig58940.13396.1 vs. uniprot
Match: UPI000B92FB72 (zinc finger BED domain-containing protein RICESLEEPER 3-like n=1 Tax=Myzus persicae TaxID=13164 RepID=UPI000B92FB72) HSP 1 Score: 63.2 bits (152), Expect = 1.140e-9 Identity = 38/104 (36.54%), Postives = 56/104 (53.85%), Query Frame = 1
Query: 16 STDIWTDRRGKMYISFTIHVCDGSTL-RAIDLACSPFDEAHTAVNIAHKLKGILEKRGLNPSKCVAITMDNAANMIKAGDMLNDDSNVSMTRVSCFCHTIQLVI 324
+TD W+ YIS T H+ + L ++ LA +E HTAVN+A KLK IL+ +N IT DNA N++ A +L + + V+C H++QL I
Sbjct: 46 TTDGWSSMEQNSYISLTAHIINNEWLPKSFTLATQEMEERHTAVNLAEKLKSILDDWEINGKVSTVIT-DNAKNVVNAVKLLPLNIDNENMDVTCAAHSLQLAI 148
BLAST of mRNA_H-elongata_contig58940.13396.1 vs. uniprot
Match: UPI000DC14DC8 (zinc finger BED domain-containing protein 1-like n=1 Tax=Melanaphis sacchari TaxID=742174 RepID=UPI000DC14DC8) HSP 1 Score: 62.8 bits (151), Expect = 3.300e-9 Identity = 36/106 (33.96%), Postives = 59/106 (55.66%), Query Frame = 1
Query: 16 STDIWTDRRGKMYISFTIHVCDGST---LRAIDLACSPFDEAHTAVNIAHKLKGILEKRGLNPSKCVAITMDNAANMIKAGDMLNDDSNVSMTRVSCFCHTIQLVI 324
+TD WT R + +++ T H D L ++ LAC+ F+++HTA N+A LK +++ GL+ + + DNAAN+ A + N R+SCF H I L++
Sbjct: 200 TTDGWTSRNNESFLAVTAHFIDPDNVTELSSVLLACTSFEDSHTADNLALFLKNTVDEWGLS-QRITVVVSDNAANIKSAIEKCN------WRRLSCFAHDINLIV 298
BLAST of mRNA_H-elongata_contig58940.13396.1 vs. uniprot
Match: A0A6J2YC96_SITOR (zinc finger BED domain-containing protein 1-like n=1 Tax=Sitophilus oryzae TaxID=7048 RepID=A0A6J2YC96_SITOR) HSP 1 Score: 60.1 bits (144), Expect = 2.900e-8 Identity = 39/111 (35.14%), Postives = 59/111 (53.15%), Query Frame = 1
Query: 1 KFFGASTDIWTDRRGKMYISFTIH-VCDGSTLRAIDLACSPFDEA--HTAVNIAHKLKGILEKRGLNPSKCVAITMDNAANMIKAGDMLNDDSNVSMTRVSCFCHTIQLVI 324
K+ ++D W+ R + Y++ T H V L++ L+ P + HTA NI+ LK + + G+ +K I DNAANM+KA D+L S + CF HTI LV+
Sbjct: 225 KYVAITSDSWSSRATESYLTVTCHFVSSNFELKSAVLSTKPLENGVNHTAENISCALKDLFVEWGIE-NKISGIVTDNAANMMKACDLLKKKS------LPCFAHTINLVV 328
BLAST of mRNA_H-elongata_contig58940.13396.1 vs. uniprot
Match: A0A498MLC7_LABRO (Zinc finger BED domain-containing DAYSLEEPER-like protein n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498MLC7_LABRO) HSP 1 Score: 57.8 bits (138), Expect = 1.810e-7 Identity = 45/132 (34.09%), Postives = 62/132 (46.97%), Query Frame = 1
Query: 1 KFFGASTDIWTDRRGKMYISFTIHVCDGST----LRAIDLACSPFDEAHTAVNIAHKLKGILEKRGLNPSKCVAITMDNAANMIKA-------------------GDMLNDDSNV-SMTRVSCFCHTIQLVI 324
K + DIW+DR + Y+ T HV + ST L A L C F H++ NI+ IL+ ++ IT DNAANM KA G+ L+ D + S R+SCF H++QLVI
Sbjct: 37 KSISVTADIWSDRTMRSYLGVTAHVLNSSTSGYTLNAYLLNCRRFKWRHSSENISAAFDEILDDYNISDKVDFIIT-DNAANMKKAFKVIMADHSDDSEDEEDMVGEQLDTDFLLGSRQRLSCFAHSLQLVI 167 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58940.13396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig58940.13396.1 >prot_H-elongata_contig58940.13396.1 ID=prot_H-elongata_contig58940.13396.1|Name=mRNA_H-elongata_contig58940.13396.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp KFFGASTDIWTDRRGKMYISFTIHVCDGSTLRAIDLACSPFDEAHTAVNIback to top mRNA from alignment at H-elongata_contig58940:2377..2700- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig58940.13396.1 ID=mRNA_H-elongata_contig58940.13396.1|Name=mRNA_H-elongata_contig58940.13396.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=324bp|location=Sequence derived from alignment at H-elongata_contig58940:2377..2700- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig58940:2377..2700- >mRNA_H-elongata_contig58940.13396.1 ID=mRNA_H-elongata_contig58940.13396.1|Name=mRNA_H-elongata_contig58940.13396.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig58940:2377..2700- (Himanthalia elongata Himel1 dioecious)back to top |