mRNA_H-elongata_contig58874.13389.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig58874.13389.1
Unique NamemRNA_H-elongata_contig58874.13389.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig58874.13389.1 vs. uniprot
Match: D8LM73_ECTSI (MCM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM73_ECTSI)

HSP 1 Score: 303 bits (775), Expect = 2.630e-93
Identity = 162/227 (71.37%), Postives = 176/227 (77.53%), Query Frame = 1
Query:   22 MTTFLECHYLTTIHSTIVSAEDQEKDYALTVNAQDLIHFDSRLGYLVLRRPDLLLELMCEALGEVQSRIVADAKEAEGVHLPNTEPPPPRSGVRP--TLKANAHIRITHLPPMSDLCKPNISSIRGTDLGSLIQIQVRSKRELRGDGIAVDGTVIRTGAVKMLEVSREYRCQNKTCGAIFSVHSDMSQGNLLSQPTSCPGVRDKLCKSTRFAEHGDHRYSDYQEVRL 696
            MTTFLE  YL TIH TIVSA+DQEKDYAL VNAQDLIHFDSRL YLVL RPDLLLELM EALGEVQ+RIVA+  EA              SG  P  T+K NAHIRITHLPP+SDLCKPNIS+IRGTDLG LIQIQ               GTVIR+GA KMLEVSREYRCQNKTCGA+FSVHSDMSQGNLL+ PTSCPGV +K CK TRF EHGDH+YSDYQE+++
Sbjct:    1 MTTFLERRYLATIHRTIVSAQDQEKDYALAVNAQDLIHFDSRLAYLVLHRPDLLLELMREALGEVQARIVAE--EAXXXXXXXXXXXXXDSGRTPVLTVKGNAHIRITHLPPLSDLCKPNISAIRGTDLGVLIQIQ---------------GTVIRSGAAKMLEVSREYRCQNKTCGAVFSVHSDMSQGNLLAPPTSCPGVGEKQCKGTRFMEHGDHKYSDYQEMKV 210          
BLAST of mRNA_H-elongata_contig58874.13389.1 vs. uniprot
Match: A0A835Z090_9STRA (MCM2/3/5 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z090_9STRA)

HSP 1 Score: 161 bits (407), Expect = 9.510e-42
Identity = 106/248 (42.74%), Postives = 129/248 (52.02%), Query Frame = 1
Query:  118 AQDLIHFDSRLGYLVLRRPDLLLELMCEALGEVQSRIVADAKEAEGVHLPNTE--PPPPRSGV---------RPTL--KANAHIRITHLPPMSDLCKPNISSIRGTDLGSLIQIQVRSKRELRGDGIA----------VDGTVIRTGAVKMLEVSREYRCQNK-----------------------------TCGAIFSVHSDMSQGNLLSQPTSCPG---VRDKLCKSTRFAEHGDHRYSDYQEVRL 696
            AQD+IH D ++ YL+L     L  L+ EAL EVQ  + +DA    G  LP     PPPP  G           P L  K NAH+R+ HLP +SDLCKPN+SSIR TDL  +IQ+Q         D I           + GTVIRTG VKMLEV+R+Y+CQNK                             TCG  F V  DMSQGN+L  P SCPG        CKS+RF E+G H YSDYQE+++
Sbjct:  103 AQDVIHEDPQVAYLLLHHYHPLFPLLDEALSEVQHEL-SDAMSPRGA-LPRRPHAPPPPHDGALLHEAPPHDAPPLSVKRNAHVRLAHLPSVSDLCKPNVSSIRNTDLNRVIQVQPILYMSTPADVIVCHKMRLLIYRIQGTVIRTGMVKMLEVTRQYQCQNKGADSVLLRKVLLIAQRRLICSYLLRSAWQTCGHTFEVACDMSQGNMLVPPRSCPGRGAPGSGGCKSSRFQEYGAHHYSDYQEIKV 348          
BLAST of mRNA_H-elongata_contig58874.13389.1 vs. uniprot
Match: D7G551_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G551_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 1.100e-38
Identity = 97/232 (41.81%), Postives = 111/232 (47.84%), Query Frame = 1
Query:    1 PDEYVSQMTTFLECHYLTTIHSTIVSAEDQEKDYALTVNAQDLIHFDSRLGYLVLRRPDLLLELMCEALGEVQSRIVADAKEAEGVHLPNTEPPPPRSGVRPTLKANAHIRITHLPPMSDLCKPNISSIRGTDLGSLIQIQVRSKRELRGDGIAVDGTVIRTGAVKMLEVSREYRCQNKTCGAIFSVHSDMSQGNLLSQPTSCPGVRDKLCKSTRFAEHGDHRYSDYQEVRL 696
            PDEYV+QMTTFLE  YL TIH TIVSA                                                                        VRP       +R     P SD  +     +     GSLI+  +       GD     GTVIR+GA KMLEVSREYRCQNKTCGA+FSVHSDMSQGNLL+ PTSCPGV +K CK TRF EHGDH+YSDYQE+++
Sbjct:    5 PDEYVAQMTTFLERRYLATIHRTIVSA------------------------------------------------------------------------VRP----GERLRARSQRPRSDPLRLAACLLGAAPSGSLIRDSLIYLARAAGDA---QGTVIRSGAAKMLEVSREYRCQNKTCGAVFSVHSDMSQGNLLAPPTSCPGVGEKQCKGTRFMEHGDHKYSDYQEMKV 157          
BLAST of mRNA_H-elongata_contig58874.13389.1 vs. uniprot
Match: A0A6H5JSZ1_9PHAE (MCM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSZ1_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 4.870e-36
Identity = 62/73 (84.93%), Postives = 66/73 (90.41%), Query Frame = 1
Query:  469 GTVIRTGAVKMLEVSREYRCQNKTCGAIFSVHSDMSQGNLLSQPTSCPGVRDKLCKSTRFAEHGDHRYSDYQE 687
            GTVIR+GA KMLEVSREYRCQNKTCGA+FSVHSDMSQGNLL+ PTSCPGV  K CK TRF EHGDH+YSDYQE
Sbjct:   39 GTVIRSGAAKMLEVSREYRCQNKTCGAVFSVHSDMSQGNLLAPPTSCPGVGQKQCKGTRFMEHGDHKYSDYQE 111          
BLAST of mRNA_H-elongata_contig58874.13389.1 vs. uniprot
Match: A0A7S2WCY2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WCY2_9STRA)

HSP 1 Score: 138 bits (347), Expect = 9.910e-34
Identity = 83/212 (39.15%), Postives = 121/212 (57.08%), Query Frame = 1
Query:   70 IVSAEDQEKDYALTVNAQDLIHFDSRLGYLVLRRPDLLLELMCEALGEVQSRIVADA--KEAEGVHLPNTEPPPPRSGVRPTLKANAHIRITHLPPMSDLCKPNISSIRGTDLGSLIQIQVRSKRELRGDGIAVDGTVIRTGAVKMLEVSREYRCQNKTCGAIFSVHSDMSQGNLLSQPTSCPGV-RDKLCKSTRFAEHGDHRYSDYQEVRL 696
            +VS+   E  ++  VNA + I +  R   +VLR PD+LL+L  +AL + Q  ++A+A  ++     L    P     G+  ++K N  +R THLP + + CKPN+SSIR +D+G L+QI                GTVIRT  VKMLE  REY+C +  CG  F  ++DM QGN+L +P  CP V R+  CK T+F   G  R +DYQE+++
Sbjct:   65 LVSSPHTELHFSFLVNAHEFIDYAPRKALMVLRYPDILLDLCDQALIQSQEALLANAGMQQEHQDRLARGAP-----GL--SVKQNVTVRFTHLPAIPEFCKPNVSSIRASDVGGLVQIC---------------GTVIRTSTVKMLEYMREYKCSSSRCGHTFVTYADMEQGNVLEEPRLCPMVGRNPPCKCTKFDTIGS-RCTDYQEIKI 253          
BLAST of mRNA_H-elongata_contig58874.13389.1 vs. uniprot
Match: W7TSH5_9STRA (Dna replication licensing factor mcm9 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSH5_9STRA)

HSP 1 Score: 122 bits (306), Expect = 2.570e-28
Identity = 72/210 (34.29%), Postives = 117/210 (55.71%), Query Frame = 1
Query:   70 IVSAEDQEKDYALTVNAQDLIHFDSRLGYLVLRRPDLLLELMCEALGEVQSRIVADAKEAEGVHLPNTEPPPPRSGVRPTLKANAHIRITHLPPMSDLCKPNISSIRGTDLGSLIQIQVRSKRELRGDGIAVDGTVIRTGAVKMLEVSREYRCQNKTCGAIFSVHSDMSQGNLLSQPTSCPGVRDKLCKSTRFAEHGD-HRYSDYQEVRL 696
            ++  +D+   ++  VNAQD+I F+  +GYL++  P +LL +  EA+  VQ  ++   +  + V  P+      RS    ++K + H+RI H+PP+ +L K ++S IR  D+G LIQ               V GTV+R GAVKML  SRE+ C+N  C   F V++D  QG ++  P +CP    + C+S+ F E  +    +DYQE+++
Sbjct:   67 LLHRDDEMGHHSFVVNAQDIIAFNPMVGYLLMYNPMVLLPIFEEAVLRVQMTLLKTLEAKDRVDQPDNATQQLRS--HRSVKGHVHVRIFHIPPIPELYKSSLSDIRAHDVGRLIQ---------------VIGTVVRLGAVKMLNASREFTCRNGKCRHRFRVYADFEQGYVMQAPQACP----RECRSSEFEEAPEADECTDYQEIKI 255          
BLAST of mRNA_H-elongata_contig58874.13389.1 vs. uniprot
Match: F0XWD1_AURAN (MCM domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XWD1_AURAN)

HSP 1 Score: 117 bits (292), Expect = 2.130e-26
Identity = 76/210 (36.19%), Postives = 111/210 (52.86%), Query Frame = 1
Query:   70 IVSAEDQEKDYALTVNAQDLIHFDSRLGYLVLRRPDLLLELMCEALGEVQSRIVADAKEAEGVHLPNTEPPPPRSGVRPTLKANAHIRITHLPPMSDLCKPNISSIRGTDLGSLIQIQVRSKRELRGDGIAVDGTVIRTGAVKMLEVSREYRCQNKTCGAIFSVHSDMSQGNLLSQPTSCPGVRD-KLCKSTRFAEHGDHRYSDYQEVRL 696
            +V+ +D        V+  D++  D+ L    LR P +++ ++ +AL E Q R++A A  A             R   RP  +A A +R   +PP+ +  K N+SS+R +D+G L+Q               V GTV+R GAVK++E  R Y+C   +CGA F+V++D  QGNLL +PT CPG      C S RF E G    +DYQEVRL
Sbjct:   68 LVARDDAAGVVGFDVDCVDVVAHDAELLACTLRHPKVMVPVLDDALAEAQDRLLASASAAG------------RDDWRPR-RAKARLRC--VPPLPEHWKANVSSLRASDVGKLVQ---------------VCGTVVRAGAVKIIESCRTYQCGAASCGATFAVYADREQGNLLEKPTRCPGANGCGGCSSRRFVEVGREN-ADYQEVRL 246          
BLAST of mRNA_H-elongata_contig58874.13389.1 vs. uniprot
Match: A0A4D9DH93_9STRA (MCM domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DH93_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.500e-22
Identity = 64/184 (34.78%), Postives = 101/184 (54.89%), Query Frame = 1
Query:  148 LGYLVLRRPDLLLELMCEALGEVQSRIVADAKEAEGVHLPNTEPPPPRSGVRPTLKANAHIRITHLPPMSDLCKPNISSIRGTDLGSLIQIQVRSKRELRGDGIAVDGTVIRTGAVKMLEVSREYRCQNKTCGAIFSVHSDMSQGNLLSQPTSCPGVRDKLCKSTRFAEHGD-HRYSDYQEVRL 696
            +GYL++  P +LL +  EA+  VQ  ++   +  + V  P+      RS    ++K + H+RI H+PP+ +L K ++S IR  D+G LIQ               V GTV+R GAVKML  SRE+ C+N  C   F V++D  QG ++  P +CP    + C+S+ F E  +    +DYQE+++
Sbjct:    2 VGYLLMYNPMVLLPIFEEAVLRVQMTLLKTLEAKDRVDQPDNATQQLRS--HRSVKGHVHVRIFHIPPIPELYKSSLSDIRAHDVGRLIQ---------------VIGTVVRLGAVKMLNASREFTCRNGKCRHRFRVYADFEQGYVMQAPQACP----RECRSSEFEEAPEADECTDYQEIKI 164          
BLAST of mRNA_H-elongata_contig58874.13389.1 vs. uniprot
Match: A0A7S3ZT70_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZT70_9STRA)

HSP 1 Score: 101 bits (252), Expect = 4.510e-21
Identity = 69/212 (32.55%), Postives = 104/212 (49.06%), Query Frame = 1
Query:   70 IVSAEDQEKD---YALTVNAQDLIHFDSRLGYLVLRRPDLLLELMCEALGEVQSRIVADAKEAEGVHLPNTEPPPPRSGVRPTLKANAHIRITHLPPMSDLCKPNISSIRGTDLGSLIQIQVRSKRELRGDGIAVDGTVIRTGAVKMLEVSREYRCQNKTCGAIFSVHSDMSQGNLLSQPTSCPGVRDKLCKSTRFAEHGDHRYSDYQEVRL 696
            +VS ED   D     + V+  +L  FD+     +LR P+ LL +  EAL +    +++    +                     +  A  R+ H PP+S   KPN+S++R  D+G L+QI+               GTV+RTGAV++LE  R YRC ++ C  +F V  D +QGN+   P  CPG +D  C S RF E  +   +DYQE+R+
Sbjct:   87 VVSGEDAAGDARGVGVPVDLCELARFDAGAAQGLLRWPEKLLPVFDEALNDGVKALLSSQTASRHPDW---------------RERKARARLRHCPPLSAHRKPNVSALRCGDVGPLVQIE---------------GTVVRTGAVRVLEAQRWYRCLDQRCEHVFPVKPDAAQGNVFEAPKRCPG-QDGSCGSRRFVEV-ERENADYQELRV 266          
BLAST of mRNA_H-elongata_contig58874.13389.1 vs. uniprot
Match: A0A5A8DW00_CAFRO (MCM domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DW00_CAFRO)

HSP 1 Score: 97.4 bits (241), Expect = 1.310e-19
Identity = 77/245 (31.43%), Postives = 114/245 (46.53%), Query Frame = 1
Query:    7 EYVSQMTTFLEC----HYLTTIHSTIVSAEDQEKDYALTVNAQDLIHFDSRLGYLVLRRPDLLLELMCEALGEVQSRIVADAKEAE----GVHLPNTEPPPPRSGVRP-----TLKANAHIRITHLPPMSDLCKPNISSIRGTDLGSLIQIQVRSKRELRGDGIAVDGTVIRTGAVKMLEVSREYRCQNKTCGAIFSVHSDMSQGNLLSQPTSCPGVRDKLCK--STRFAEHGDHRYSDYQEVRL 696
            E V QMT  +E      Y   +   I+   D  + Y L V   D++     +   + ++  ++L  + EA+GE Q R++  A E +    G  L          GV       + K + H R++HLP + +  KPN+SSIR TD+GS +Q               V GTVIRTGA ++LE  R+Y+C +  C   F+V S +  G+    P  CP      CK  S R  E    R +DYQEV++
Sbjct:    9 ELVRQMTLLIELLGSPRYAPAVEK-ILREPDDAQHYGLEVWLSDVLDVVPEISEELGQQSSVVLLKLDEAIGEAQRRLMTAADEDDEAEVGGGLDARSVAASAVGVGEGARGLSFKPHVHARLSHLPGVPEYSKPNVSSIRATDIGSFVQ---------------VPGTVIRTGATRVLEAERQYQCSSAKCNFTFTVRSTVESGHTAEVPAICPSPSG-TCKGRSFRLIEESVVR-TDYQEVKI 235          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58874.13389.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LM73_ECTSI2.630e-9371.37MCM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835Z090_9STRA9.510e-4242.74MCM2/3/5 family-domain-containing protein n=1 Tax=... [more]
D7G551_ECTSI1.100e-3841.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSZ1_9PHAE4.870e-3684.93MCM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2WCY2_9STRA9.910e-3439.15Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
W7TSH5_9STRA2.570e-2834.29Dna replication licensing factor mcm9 n=1 Tax=Nann... [more]
F0XWD1_AURAN2.130e-2636.19MCM domain-containing protein n=1 Tax=Aureococcus ... [more]
A0A4D9DH93_9STRA1.500e-2234.78MCM domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A7S3ZT70_9STRA4.510e-2132.55Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A5A8DW00_CAFRO1.310e-1931.43MCM domain-containing protein n=1 Tax=Cafeteria ro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58874contigH-elongata_contig58874:302..3329 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score303.1
Seed ortholog evalue1.1e-79
Seed eggNOG ortholog2880.D8LM73
Preferred nameMCM9
KEGG koko:K10738
GOsGO:0000724,GO:0000725,GO:0005575,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0032991,GO:0033554,GO:0034641,GO:0042555,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097362,GO:1901360
EggNOG free text desc.DNA replication initiation
EggNOG OGsCOG1241@1,KOG0477@2759
Ec32 ortholog descriptionNucleic acid-binding, OB-fold
Ec32 orthologEc-18_002740.1
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03032
Hectar predicted targeting categoryother localisation
Exons5
Model size696
Cds size675
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58874.13389.1prot_H-elongata_contig58874.13389.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig58874 323..3329 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930955.3312044-UTR-H-elongata_contig58874:301..3221622930955.3312044-UTR-H-elongata_contig58874:301..322Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58874 302..322 +
1691679639.3925269-UTR-H-elongata_contig58874:301..3221691679639.3925269-UTR-H-elongata_contig58874:301..322Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58874 302..322 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930955.346242-CDS-H-elongata_contig58874:322..4171622930955.346242-CDS-H-elongata_contig58874:322..417Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58874 323..417 +
1691679639.4051068-CDS-H-elongata_contig58874:322..4171691679639.4051068-CDS-H-elongata_contig58874:322..417Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58874 323..417 +
1622930955.3617406-CDS-H-elongata_contig58874:770..8431622930955.3617406-CDS-H-elongata_contig58874:770..843Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58874 771..843 +
1691679639.4158413-CDS-H-elongata_contig58874:770..8431691679639.4158413-CDS-H-elongata_contig58874:770..843Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58874 771..843 +
1622930955.3801737-CDS-H-elongata_contig58874:1200..14791622930955.3801737-CDS-H-elongata_contig58874:1200..1479Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58874 1201..1479 +
1691679639.433728-CDS-H-elongata_contig58874:1200..14791691679639.433728-CDS-H-elongata_contig58874:1200..1479Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58874 1201..1479 +
1622930955.397609-CDS-H-elongata_contig58874:1862..19941622930955.397609-CDS-H-elongata_contig58874:1862..1994Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58874 1863..1994 +
1691679639.45488-CDS-H-elongata_contig58874:1862..19941691679639.45488-CDS-H-elongata_contig58874:1862..1994Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58874 1863..1994 +
1622930955.4162881-CDS-H-elongata_contig58874:3233..33291622930955.4162881-CDS-H-elongata_contig58874:3233..3329Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58874 3234..3329 +
1691679639.4722085-CDS-H-elongata_contig58874:3233..33291691679639.4722085-CDS-H-elongata_contig58874:3233..3329Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58874 3234..3329 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig58874.13389.1

>prot_H-elongata_contig58874.13389.1 ID=prot_H-elongata_contig58874.13389.1|Name=mRNA_H-elongata_contig58874.13389.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=225bp
MTTFLECHYLTTIHSTIVSAEDQEKDYALTVNAQDLIHFDSRLGYLVLRR
PDLLLELMCEALGEVQSRIVADAKEAEGVHLPNTEPPPPRSGVRPTLKAN
AHIRITHLPPMSDLCKPNISSIRGTDLGSLIQIQVRSKRELRGDGIAVDG
TVIRTGAVKMLEVSREYRCQNKTCGAIFSVHSDMSQGNLLSQPTSCPGVR
DKLCKSTRFAEHGDHRYSDYQEVRL
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mRNA from alignment at H-elongata_contig58874:302..3329+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig58874.13389.1 ID=mRNA_H-elongata_contig58874.13389.1|Name=mRNA_H-elongata_contig58874.13389.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3028bp|location=Sequence derived from alignment at H-elongata_contig58874:302..3329+ (Himanthalia elongata Himel1 dioecious)
CCTGACGAGTACGTGAGCCAAATGACCACCTTCCTGGAGTGCCATTACCT CACCACGATACACTCGACCATCGTCAGCGCCGAGGACCAGGAGAAGGACT ACGCGCTCACGGTGAAGTAAGCGCTTTGAGAATATTCCCCGACACATCCA AGGTTATCCGTTTGTTTGCTTGTTTGTTTCTTGTGTTTTGTTTCCCCCCT TTTGCGTCCTTCCCTTCCGTTCCGACGGTCATCGACGCGTTTGAGTTTTT ACTCTCACAACCCCTTGACGACATTGTTTTTCGACTCCCTCTTGACGGGA CTGTCACATCAGAGATGCGCAACACGCAATACAAACTATTAAGTAGATTA CGGTGACGGTACTGGTTTCTCTCTCCCTGGAGTTACGTTGGTAATTAAGC TTAATTTGCACGCCCACCCCCTCCGCCCCTACCCCGCCACTCCCCGCCCG GATATCTTGCGCGCTCCAGCGCTCAAGACCTGATCCATTTCGATTCGCGA CTGGGTTATCTAGTGCTCCGTCGACCGGATCTATTGCTCGAGGTGTGCTG AGTCCCCGATCGTGAGGGCACGAGGGCGTTATATGGCTGGGGGAAAGGGA GATATGGGCCTCAAGTTCAAGATCAATCGTATCTTATGAGTTAAAGGGGT AATGTGGCGGTCGTTGAGCGTACGCCATGTCGATGGAAAATTCTACGCAT CCATCAACCGAGTCCGACAGGGGGGGGGTATTGCGGTATTGCTTCCCATT GCGAATGCTTCCGACCCCCCCCCCCTCCCCGCTGAATGTATGTCTTCTCG GTAAGGTACTTGCGGTGCTATCCGAGATCTGTAATTTTTCACTCCGAACG ATAAACTGCGCCCTCCTCTCTTCTACCCCCGCCCTTCCGTCCCCGAAAGC TAATGTGCGAGGCGTTGGGTGAAGTGCAGAGTCGCATCGTGGCGGACGCC AAAGAAGCCGAGGGCGTTCACCTCCCCAACACCGAGCCGCCGCCGCCGAG GTCGGGGGTGCGGCCGACTCTGAAGGCCAACGCGCACATCCGTATCACAC ACCTCCCACCCATGTCCGACCTGTGCAAGCCCAACATCAGCTCCATCCGA GGCACCGATCTCGGCTCGCTCATCCAGATCCAGGTTCGAAGCAAAAGAGA GCTACGAGGTGACGGAATTGCGGTTGATGTTGTGGAGGCCTTGTTGCCGT CTCCCCAACGGAGCGGCACGTTCTTGGTTCGGCTTAGGCACGGCCCACGA TTGGCTTACTGCCGCTGCAGGTGACAAGGATCTCGCCTTGTATTTTGCTC AAGTGCTTCAGGCGTGAGGCAGGGTTAAGGAGTCATGAACTCTTTCTATA CCCTATATCCAAGTGTTTTCTGAGAGATACCGAGGGGGTAGAGAGACGGG GAGGGGGGGTTCTATATTTCTGTGAAGCGATCCGCTCGTAGAAGACAAAC ACCCCACCACCTTAGTCTGCTCCTCCCTGGCAAATCGAAGCAATCGTCGG TGTTAATAGAATTGCCGCGGTTTTCAATCGAATGGCCTGCTCTCGTCGGG ATCGGAAACAGGGCACGGTCATACGAACGGGGGCGGTCAAGATGCTGGAA GTGTCGCGAGAGTACCGGTGCCAGAACAAAACCTGCGGAGCGATCTTCAG CGTGCACTCCGACATGAGCCAGGGCAACCTGCTGTCGCAGCCGGTCGGAC GTTTTCTCTTATAGTGTTTCCCGGTTGGACGTTTTCTCTTAAGCAGGGGG TGGAGGGGGAGACAAAGAGCGCACGACGTACCGACGAAGGCGCGAGGTTA AAAAAAAAACAGACATGCGATGCTCCTCCTCCCCCTTCAAAGAGTATATT CGTGTCTCGGTCATGAAGTCTGGCCTTCGCCCCCTATTTTAATCTATTTT TTCCGTCCCAGTCCAGTTAGTTAGGCCGGGTCTTATCAGAATACAAAAAA TAAATATCCAGCCGATTTAAATTTAAATCGGGCTCTGATTGGATAAAGGC TAGGCGTTATTTCGCTTTCAAACAATCAGAGCCCGATTTAAATTTTAATC GGCTGGAAATTTATTTTTTTGTATTCCAATAAGACCTAGCCTTAGTTAGT CCACTTCAGTTCAGCGTGAATGGCCGAACCCTTCTTGCCGTATGCGTCGT CAGCTTTAATATCCGTGGCACACCGCTGCTGCGGCGTGAAAAACATATGT CTTGTGAAGCCACCCCTGTTTAGCCATGAGCCAGGGGGGAGGTTTGACAA ACTGGAGGAGGGGAAGGGTAACGGGTGAATTTTGTCCGCGGGAATCACAG AAGCATTCATATATATATATATATAGAGAGAGAGAGAAAAAATATTGTAC CTAGTGTAGTGTGGTACAAAATTGTATCGCTTAAGCATCCTCTCTTATAC GCGATCAGCCCGCAATACGAAACGAAAGGATCCGAGGACGCATCTTCATG TAAGGCGTTCCTCTTTTTTATCTTGATTTCTTCTATTTGGGGAGAGGGGA GGGGGGCTGTTTCTCCGCCGACCTCCGCATTCCCTCCATGAAAGCACGAA ATAAAATTATGCATGAGTCGGCGATGTCACGACTACGGCGTATCGTAGCC TCGTCCTGGGAGCCCAGAAGCACGCGTGAGCGCTCGATCGTCCGTTGGAA TCCATGGCGAAAATGAAAATACCCTCCACGTTGCGATAATTGCAGTGCAG CCCCCACCTGGGCTCCCCGCCCCCCCGCCCTCGCCCCCCCCTCGAATAAC CGACCAACGCCGCCAGACTTCACACCTTCTCTATTCCCGAGTATGTAGGA GCTAACTAACGAAGAGATTTGTGAACCCACACGACCAACAAGCGTATGTT TGTCTCACGTACGCTGTACACAGACGCACGCACACACACTATCATCAATC GCGCGGCCCGGCCTCCTCCCCCTCTCCCTTAGACGAGCTGCCCGGGGGTG CGCGACAAGCTGTGCAAGTCCACCCGGTTCGCGGAGCATGGCGACCACCG TTACAGCGACTACCAGGAGGTGCGGTTG
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Coding sequence (CDS) from alignment at H-elongata_contig58874:302..3329+

>mRNA_H-elongata_contig58874.13389.1 ID=mRNA_H-elongata_contig58874.13389.1|Name=mRNA_H-elongata_contig58874.13389.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1350bp|location=Sequence derived from alignment at H-elongata_contig58874:302..3329+ (Himanthalia elongata Himel1 dioecious)
ATGACCACCTTCCTGGAGTGCCATTACCTCACCACGATACACTCGACCAT
CGTCAGCGCCGAGGACCAGGAGAAGGACTACGCGCTCACGGTGAAATGAC
CACCTTCCTGGAGTGCCATTACCTCACCACGATACACTCGACCATCGTCA
GCGCCGAGGACCAGGAGAAGGACTACGCGCTCACGGTGAACGCTCAAGAC
CTGATCCATTTCGATTCGCGACTGGGTTATCTAGTGCTCCGTCGACCGGA
TCTATTGCTCGAGCGCTCAAGACCTGATCCATTTCGATTCGCGACTGGGT
TATCTAGTGCTCCGTCGACCGGATCTATTGCTCGAGCTAATGTGCGAGGC
GTTGGGTGAAGTGCAGAGTCGCATCGTGGCGGACGCCAAAGAAGCCGAGG
GCGTTCACCTCCCCAACACCGAGCCGCCGCCGCCGAGGTCGGGGGTGCGG
CCGACTCTGAAGGCCAACGCGCACATCCGTATCACACACCTCCCACCCAT
GTCCGACCTGTGCAAGCCCAACATCAGCTCCATCCGAGGCACCGATCTCG
GCTCGCTCATCCAGATCCAGGTTCGAAGCAAAAGAGAGCTACGAGGTGAC
GGAATTGCGGTTGATCTAATGTGCGAGGCGTTGGGTGAAGTGCAGAGTCG
CATCGTGGCGGACGCCAAAGAAGCCGAGGGCGTTCACCTCCCCAACACCG
AGCCGCCGCCGCCGAGGTCGGGGGTGCGGCCGACTCTGAAGGCCAACGCG
CACATCCGTATCACACACCTCCCACCCATGTCCGACCTGTGCAAGCCCAA
CATCAGCTCCATCCGAGGCACCGATCTCGGCTCGCTCATCCAGATCCAGG
TTCGAAGCAAAAGAGAGCTACGAGGTGACGGAATTGCGGTTGATGGCACG
GTCATACGAACGGGGGCGGTCAAGATGCTGGAAGTGTCGCGAGAGTACCG
GTGCCAGAACAAAACCTGCGGAGCGATCTTCAGCGTGCACTCCGACATGA
GCCAGGGCAACCTGCTGTCGCAGCCGGGCACGGTCATACGAACGGGGGCG
GTCAAGATGCTGGAAGTGTCGCGAGAGTACCGGTGCCAGAACAAAACCTG
CGGAGCGATCTTCAGCGTGCACTCCGACATGAGCCAGGGCAACCTGCTGT
CGCAGCCGACGAGCTGCCCGGGGGTGCGCGACAAGCTGTGCAAGTCCACC
CGGTTCGCGGAGCATGGCGACCACCGTTACAGCGACTACCAGGAGGTGCG
GTTGACGAGCTGCCCGGGGGTGCGCGACAAGCTGTGCAAGTCCACCCGGT
TCGCGGAGCATGGCGACCACCGTTACAGCGACTACCAGGAGGTGCGGTTG
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