mRNA_H-elongata_contig58874.13389.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig58874.13389.1 vs. uniprot
Match: D8LM73_ECTSI (MCM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM73_ECTSI) HSP 1 Score: 303 bits (775), Expect = 2.630e-93 Identity = 162/227 (71.37%), Postives = 176/227 (77.53%), Query Frame = 1
Query: 22 MTTFLECHYLTTIHSTIVSAEDQEKDYALTVNAQDLIHFDSRLGYLVLRRPDLLLELMCEALGEVQSRIVADAKEAEGVHLPNTEPPPPRSGVRP--TLKANAHIRITHLPPMSDLCKPNISSIRGTDLGSLIQIQVRSKRELRGDGIAVDGTVIRTGAVKMLEVSREYRCQNKTCGAIFSVHSDMSQGNLLSQPTSCPGVRDKLCKSTRFAEHGDHRYSDYQEVRL 696
MTTFLE YL TIH TIVSA+DQEKDYAL VNAQDLIHFDSRL YLVL RPDLLLELM EALGEVQ+RIVA+ EA SG P T+K NAHIRITHLPP+SDLCKPNIS+IRGTDLG LIQIQ GTVIR+GA KMLEVSREYRCQNKTCGA+FSVHSDMSQGNLL+ PTSCPGV +K CK TRF EHGDH+YSDYQE+++
Sbjct: 1 MTTFLERRYLATIHRTIVSAQDQEKDYALAVNAQDLIHFDSRLAYLVLHRPDLLLELMREALGEVQARIVAE--EAXXXXXXXXXXXXXDSGRTPVLTVKGNAHIRITHLPPLSDLCKPNISAIRGTDLGVLIQIQ---------------GTVIRSGAAKMLEVSREYRCQNKTCGAVFSVHSDMSQGNLLAPPTSCPGVGEKQCKGTRFMEHGDHKYSDYQEMKV 210
BLAST of mRNA_H-elongata_contig58874.13389.1 vs. uniprot
Match: A0A835Z090_9STRA (MCM2/3/5 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z090_9STRA) HSP 1 Score: 161 bits (407), Expect = 9.510e-42 Identity = 106/248 (42.74%), Postives = 129/248 (52.02%), Query Frame = 1
Query: 118 AQDLIHFDSRLGYLVLRRPDLLLELMCEALGEVQSRIVADAKEAEGVHLPNTE--PPPPRSGV---------RPTL--KANAHIRITHLPPMSDLCKPNISSIRGTDLGSLIQIQVRSKRELRGDGIA----------VDGTVIRTGAVKMLEVSREYRCQNK-----------------------------TCGAIFSVHSDMSQGNLLSQPTSCPG---VRDKLCKSTRFAEHGDHRYSDYQEVRL 696
AQD+IH D ++ YL+L L L+ EAL EVQ + +DA G LP PPPP G P L K NAH+R+ HLP +SDLCKPN+SSIR TDL +IQ+Q D I + GTVIRTG VKMLEV+R+Y+CQNK TCG F V DMSQGN+L P SCPG CKS+RF E+G H YSDYQE+++
Sbjct: 103 AQDVIHEDPQVAYLLLHHYHPLFPLLDEALSEVQHEL-SDAMSPRGA-LPRRPHAPPPPHDGALLHEAPPHDAPPLSVKRNAHVRLAHLPSVSDLCKPNVSSIRNTDLNRVIQVQPILYMSTPADVIVCHKMRLLIYRIQGTVIRTGMVKMLEVTRQYQCQNKGADSVLLRKVLLIAQRRLICSYLLRSAWQTCGHTFEVACDMSQGNMLVPPRSCPGRGAPGSGGCKSSRFQEYGAHHYSDYQEIKV 348
BLAST of mRNA_H-elongata_contig58874.13389.1 vs. uniprot
Match: D7G551_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G551_ECTSI) HSP 1 Score: 150 bits (379), Expect = 1.100e-38 Identity = 97/232 (41.81%), Postives = 111/232 (47.84%), Query Frame = 1
Query: 1 PDEYVSQMTTFLECHYLTTIHSTIVSAEDQEKDYALTVNAQDLIHFDSRLGYLVLRRPDLLLELMCEALGEVQSRIVADAKEAEGVHLPNTEPPPPRSGVRPTLKANAHIRITHLPPMSDLCKPNISSIRGTDLGSLIQIQVRSKRELRGDGIAVDGTVIRTGAVKMLEVSREYRCQNKTCGAIFSVHSDMSQGNLLSQPTSCPGVRDKLCKSTRFAEHGDHRYSDYQEVRL 696
PDEYV+QMTTFLE YL TIH TIVSA VRP +R P SD + + GSLI+ + GD GTVIR+GA KMLEVSREYRCQNKTCGA+FSVHSDMSQGNLL+ PTSCPGV +K CK TRF EHGDH+YSDYQE+++
Sbjct: 5 PDEYVAQMTTFLERRYLATIHRTIVSA------------------------------------------------------------------------VRP----GERLRARSQRPRSDPLRLAACLLGAAPSGSLIRDSLIYLARAAGDA---QGTVIRSGAAKMLEVSREYRCQNKTCGAVFSVHSDMSQGNLLAPPTSCPGVGEKQCKGTRFMEHGDHKYSDYQEMKV 157
BLAST of mRNA_H-elongata_contig58874.13389.1 vs. uniprot
Match: A0A6H5JSZ1_9PHAE (MCM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSZ1_9PHAE) HSP 1 Score: 137 bits (346), Expect = 4.870e-36 Identity = 62/73 (84.93%), Postives = 66/73 (90.41%), Query Frame = 1
Query: 469 GTVIRTGAVKMLEVSREYRCQNKTCGAIFSVHSDMSQGNLLSQPTSCPGVRDKLCKSTRFAEHGDHRYSDYQE 687
GTVIR+GA KMLEVSREYRCQNKTCGA+FSVHSDMSQGNLL+ PTSCPGV K CK TRF EHGDH+YSDYQE
Sbjct: 39 GTVIRSGAAKMLEVSREYRCQNKTCGAVFSVHSDMSQGNLLAPPTSCPGVGQKQCKGTRFMEHGDHKYSDYQE 111
BLAST of mRNA_H-elongata_contig58874.13389.1 vs. uniprot
Match: A0A7S2WCY2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WCY2_9STRA) HSP 1 Score: 138 bits (347), Expect = 9.910e-34 Identity = 83/212 (39.15%), Postives = 121/212 (57.08%), Query Frame = 1
Query: 70 IVSAEDQEKDYALTVNAQDLIHFDSRLGYLVLRRPDLLLELMCEALGEVQSRIVADA--KEAEGVHLPNTEPPPPRSGVRPTLKANAHIRITHLPPMSDLCKPNISSIRGTDLGSLIQIQVRSKRELRGDGIAVDGTVIRTGAVKMLEVSREYRCQNKTCGAIFSVHSDMSQGNLLSQPTSCPGV-RDKLCKSTRFAEHGDHRYSDYQEVRL 696
+VS+ E ++ VNA + I + R +VLR PD+LL+L +AL + Q ++A+A ++ L P G+ ++K N +R THLP + + CKPN+SSIR +D+G L+QI GTVIRT VKMLE REY+C + CG F ++DM QGN+L +P CP V R+ CK T+F G R +DYQE+++
Sbjct: 65 LVSSPHTELHFSFLVNAHEFIDYAPRKALMVLRYPDILLDLCDQALIQSQEALLANAGMQQEHQDRLARGAP-----GL--SVKQNVTVRFTHLPAIPEFCKPNVSSIRASDVGGLVQIC---------------GTVIRTSTVKMLEYMREYKCSSSRCGHTFVTYADMEQGNVLEEPRLCPMVGRNPPCKCTKFDTIGS-RCTDYQEIKI 253
BLAST of mRNA_H-elongata_contig58874.13389.1 vs. uniprot
Match: W7TSH5_9STRA (Dna replication licensing factor mcm9 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSH5_9STRA) HSP 1 Score: 122 bits (306), Expect = 2.570e-28 Identity = 72/210 (34.29%), Postives = 117/210 (55.71%), Query Frame = 1
Query: 70 IVSAEDQEKDYALTVNAQDLIHFDSRLGYLVLRRPDLLLELMCEALGEVQSRIVADAKEAEGVHLPNTEPPPPRSGVRPTLKANAHIRITHLPPMSDLCKPNISSIRGTDLGSLIQIQVRSKRELRGDGIAVDGTVIRTGAVKMLEVSREYRCQNKTCGAIFSVHSDMSQGNLLSQPTSCPGVRDKLCKSTRFAEHGD-HRYSDYQEVRL 696
++ +D+ ++ VNAQD+I F+ +GYL++ P +LL + EA+ VQ ++ + + V P+ RS ++K + H+RI H+PP+ +L K ++S IR D+G LIQ V GTV+R GAVKML SRE+ C+N C F V++D QG ++ P +CP + C+S+ F E + +DYQE+++
Sbjct: 67 LLHRDDEMGHHSFVVNAQDIIAFNPMVGYLLMYNPMVLLPIFEEAVLRVQMTLLKTLEAKDRVDQPDNATQQLRS--HRSVKGHVHVRIFHIPPIPELYKSSLSDIRAHDVGRLIQ---------------VIGTVVRLGAVKMLNASREFTCRNGKCRHRFRVYADFEQGYVMQAPQACP----RECRSSEFEEAPEADECTDYQEIKI 255
BLAST of mRNA_H-elongata_contig58874.13389.1 vs. uniprot
Match: F0XWD1_AURAN (MCM domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XWD1_AURAN) HSP 1 Score: 117 bits (292), Expect = 2.130e-26 Identity = 76/210 (36.19%), Postives = 111/210 (52.86%), Query Frame = 1
Query: 70 IVSAEDQEKDYALTVNAQDLIHFDSRLGYLVLRRPDLLLELMCEALGEVQSRIVADAKEAEGVHLPNTEPPPPRSGVRPTLKANAHIRITHLPPMSDLCKPNISSIRGTDLGSLIQIQVRSKRELRGDGIAVDGTVIRTGAVKMLEVSREYRCQNKTCGAIFSVHSDMSQGNLLSQPTSCPGVRD-KLCKSTRFAEHGDHRYSDYQEVRL 696
+V+ +D V+ D++ D+ L LR P +++ ++ +AL E Q R++A A A R RP +A A +R +PP+ + K N+SS+R +D+G L+Q V GTV+R GAVK++E R Y+C +CGA F+V++D QGNLL +PT CPG C S RF E G +DYQEVRL
Sbjct: 68 LVARDDAAGVVGFDVDCVDVVAHDAELLACTLRHPKVMVPVLDDALAEAQDRLLASASAAG------------RDDWRPR-RAKARLRC--VPPLPEHWKANVSSLRASDVGKLVQ---------------VCGTVVRAGAVKIIESCRTYQCGAASCGATFAVYADREQGNLLEKPTRCPGANGCGGCSSRRFVEVGREN-ADYQEVRL 246
BLAST of mRNA_H-elongata_contig58874.13389.1 vs. uniprot
Match: A0A4D9DH93_9STRA (MCM domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DH93_9STRA) HSP 1 Score: 105 bits (263), Expect = 1.500e-22 Identity = 64/184 (34.78%), Postives = 101/184 (54.89%), Query Frame = 1
Query: 148 LGYLVLRRPDLLLELMCEALGEVQSRIVADAKEAEGVHLPNTEPPPPRSGVRPTLKANAHIRITHLPPMSDLCKPNISSIRGTDLGSLIQIQVRSKRELRGDGIAVDGTVIRTGAVKMLEVSREYRCQNKTCGAIFSVHSDMSQGNLLSQPTSCPGVRDKLCKSTRFAEHGD-HRYSDYQEVRL 696
+GYL++ P +LL + EA+ VQ ++ + + V P+ RS ++K + H+RI H+PP+ +L K ++S IR D+G LIQ V GTV+R GAVKML SRE+ C+N C F V++D QG ++ P +CP + C+S+ F E + +DYQE+++
Sbjct: 2 VGYLLMYNPMVLLPIFEEAVLRVQMTLLKTLEAKDRVDQPDNATQQLRS--HRSVKGHVHVRIFHIPPIPELYKSSLSDIRAHDVGRLIQ---------------VIGTVVRLGAVKMLNASREFTCRNGKCRHRFRVYADFEQGYVMQAPQACP----RECRSSEFEEAPEADECTDYQEIKI 164
BLAST of mRNA_H-elongata_contig58874.13389.1 vs. uniprot
Match: A0A7S3ZT70_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZT70_9STRA) HSP 1 Score: 101 bits (252), Expect = 4.510e-21 Identity = 69/212 (32.55%), Postives = 104/212 (49.06%), Query Frame = 1
Query: 70 IVSAEDQEKD---YALTVNAQDLIHFDSRLGYLVLRRPDLLLELMCEALGEVQSRIVADAKEAEGVHLPNTEPPPPRSGVRPTLKANAHIRITHLPPMSDLCKPNISSIRGTDLGSLIQIQVRSKRELRGDGIAVDGTVIRTGAVKMLEVSREYRCQNKTCGAIFSVHSDMSQGNLLSQPTSCPGVRDKLCKSTRFAEHGDHRYSDYQEVRL 696
+VS ED D + V+ +L FD+ +LR P+ LL + EAL + +++ + + A R+ H PP+S KPN+S++R D+G L+QI+ GTV+RTGAV++LE R YRC ++ C +F V D +QGN+ P CPG +D C S RF E + +DYQE+R+
Sbjct: 87 VVSGEDAAGDARGVGVPVDLCELARFDAGAAQGLLRWPEKLLPVFDEALNDGVKALLSSQTASRHPDW---------------RERKARARLRHCPPLSAHRKPNVSALRCGDVGPLVQIE---------------GTVVRTGAVRVLEAQRWYRCLDQRCEHVFPVKPDAAQGNVFEAPKRCPG-QDGSCGSRRFVEV-ERENADYQELRV 266
BLAST of mRNA_H-elongata_contig58874.13389.1 vs. uniprot
Match: A0A5A8DW00_CAFRO (MCM domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DW00_CAFRO) HSP 1 Score: 97.4 bits (241), Expect = 1.310e-19 Identity = 77/245 (31.43%), Postives = 114/245 (46.53%), Query Frame = 1
Query: 7 EYVSQMTTFLEC----HYLTTIHSTIVSAEDQEKDYALTVNAQDLIHFDSRLGYLVLRRPDLLLELMCEALGEVQSRIVADAKEAE----GVHLPNTEPPPPRSGVRP-----TLKANAHIRITHLPPMSDLCKPNISSIRGTDLGSLIQIQVRSKRELRGDGIAVDGTVIRTGAVKMLEVSREYRCQNKTCGAIFSVHSDMSQGNLLSQPTSCPGVRDKLCK--STRFAEHGDHRYSDYQEVRL 696
E V QMT +E Y + I+ D + Y L V D++ + + ++ ++L + EA+GE Q R++ A E + G L GV + K + H R++HLP + + KPN+SSIR TD+GS +Q V GTVIRTGA ++LE R+Y+C + C F+V S + G+ P CP CK S R E R +DYQEV++
Sbjct: 9 ELVRQMTLLIELLGSPRYAPAVEK-ILREPDDAQHYGLEVWLSDVLDVVPEISEELGQQSSVVLLKLDEAIGEAQRRLMTAADEDDEAEVGGGLDARSVAASAVGVGEGARGLSFKPHVHARLSHLPGVPEYSKPNVSSIRATDIGSFVQ---------------VPGTVIRTGATRVLEAERQYQCSSAKCNFTFTVRSTVESGHTAEVPAICPSPSG-TCKGRSFRLIEESVVR-TDYQEVKI 235 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58874.13389.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig58874.13389.1 >prot_H-elongata_contig58874.13389.1 ID=prot_H-elongata_contig58874.13389.1|Name=mRNA_H-elongata_contig58874.13389.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=225bp MTTFLECHYLTTIHSTIVSAEDQEKDYALTVNAQDLIHFDSRLGYLVLRRback to top mRNA from alignment at H-elongata_contig58874:302..3329+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig58874.13389.1 ID=mRNA_H-elongata_contig58874.13389.1|Name=mRNA_H-elongata_contig58874.13389.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3028bp|location=Sequence derived from alignment at H-elongata_contig58874:302..3329+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig58874:302..3329+ >mRNA_H-elongata_contig58874.13389.1 ID=mRNA_H-elongata_contig58874.13389.1|Name=mRNA_H-elongata_contig58874.13389.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1350bp|location=Sequence derived from alignment at H-elongata_contig58874:302..3329+ (Himanthalia elongata Himel1 dioecious)back to top |