mRNA_H-elongata_contig58708.13363.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig58708.13363.1 vs. uniprot
Match: A0A6H5JMF4_9PHAE (Vps8 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMF4_9PHAE) HSP 1 Score: 333 bits (853), Expect = 1.940e-100 Identity = 203/329 (61.70%), Postives = 223/329 (67.78%), Query Frame = 1
Query: 10 GTHHNAFRACEGRLYLLGRQELRAVRVQGWSQRVDSLVQAGEWLEALAVALDHYEQKVLPAEHAATAA--------------------AGAATGAXXXXXXXXXXXXXXSSVTETGLGGERXXXXXXXXXVG--------AQRRYSPPRSEAAEQINDLLAQYLRLAINNAPAAEPG----LDSGWGGTXXXXXXXXXEARRINLAQSHFQMLAGVCAEFCAVTGRLDVLFGQVFNAFRARGQQGVFLETLEPYVLTGKLKTLSPEVLKAFVDRCQSIGDMVAAERLLLRLEPRSFDFSTLLPLLRRHRLHSALLAMRAARGDFVGSLE 900
GT+HNAFRACEGRLYLLGRQELRAVRVQGWSQRV+SLVQAGEWLEALAVALDH+EQK+LPAE+AA A ATG + GGE XXXX R PRSEAAE I+DLLAQYLRLA+NNAP A+ + XXXXXX RINLA SHFQMLAGVCAEFCAVTGRLD+LFGQ+F AFRARGQQGVFL+TLEPYVL GKLKTLSPEV+ AF+DRCQS GDM+AAERL+LRLEPRS + T LPLLR HRL+SALLA+ A GD V S E
Sbjct: 851 GTYHNAFRACEGRLYLLGRQELRAVRVQGWSQRVESLVQAGEWLEALAVALDHFEQKILPAENAAAXXXXXXXXXXXXXXXXXASAHRADGATGGPLHRSGSSRDIRGVAGRMAANFGGEMLKSSSXXXXXXWPXXXXXXXXXRRPTPRSEAAEHISDLLAQYLRLAMNNAPGADSSSLHSTAAXXXXXXXXXXXGSPGGPRINLAHSHFQMLAGVCAEFCAVTGRLDMLFGQIFQAFRARGQQGVFLDTLEPYVLMGKLKTLSPEVISAFIDRCQSAGDMIAAERLVLRLEPRSLELETTLPLLRGHRLYSALLAVGALTGDHVSSAE 1179
BLAST of mRNA_H-elongata_contig58708.13363.1 vs. uniprot
Match: D8LRX0_ECTSI (Vps8 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRX0_ECTSI) HSP 1 Score: 239 bits (611), Expect = 5.200e-68 Identity = 137/192 (71.35%), Postives = 151/192 (78.65%), Query Frame = 1
Query: 349 QRRYSPPRSEAAEQINDLLAQYLRLAINNAPAAEPGLDSGWGGTXXXXXXXXXEAR--------RINLAQSHFQMLAGVCAEFCAVTGRLDVLFGQVFNAFRARGQQGVFLETLEPYVLTGKLKTLSPEVLKAFVDRCQSIGDMVAAERLLLRLEPRSFDFSTLLPLLRRHRLHSALLAMRAARGDFVGSLE 900
++R PRSEAAE I+DLLAQYLRLA+NNAPAA+ XXXXXXXXX RINLA SHFQMLAGVCAEFCAVTGRLD+LFGQ+F AFRARGQQGVFL+TLEPYVL GKLKTLSPEV+ AF+DRCQS GDM+AAERL+LRLEPRS + T LPLLR HRLHSALLA+ A GD V S E
Sbjct: 774 EQRRPAPRSEAAEHISDLLAQYLRLAMNNAPAADSSSRHSXXXXXXXXXXXXXXXXXAGSPGGPRINLAHSHFQMLAGVCAEFCAVTGRLDMLFGQIFQAFRARGQQGVFLDTLEPYVLMGKLKTLSPEVISAFIDRCQSAGDMIAAERLVLRLEPRSLELETTLPLLRGHRLHSALLAVGALTGDHVSSAE 965
BLAST of mRNA_H-elongata_contig58708.13363.1 vs. uniprot
Match: A0A7S1XT59_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XT59_9STRA) HSP 1 Score: 173 bits (439), Expect = 1.440e-46 Identity = 107/294 (36.39%), Postives = 155/294 (52.72%), Query Frame = 1
Query: 22 NAFRACEGRLYLLGRQELRAVRVQGWSQRVDSLVQAGEWLEALAVALDHYEQKVLPAEHAATAAAGAATGAXXXXXXXXXXXXXXSSVTETGLGGERXXXXXXXXXVGAQRRYSPPRSEAAEQINDLLAQYLRLAINNAPAAEPGLDSGWGGTXXXXXXXXXEARRINLAQSHFQMLAGVCAEFCAVTGRLDVLFGQVFNAFRARGQQGVFLETLEPYVLTGKLKTLSPEVLKAFVDRCQSIGDMVAAERLLLRLEPRSFDFSTLLPLLRRHRLHSALLAM-RAARGDFVGSLE 900
++ R CE ++LLG +ELR ++Q QR+D+LV AGEWL ALA++LDH+++ ++P + TGA + TE+ G E + QRRYS +A + LL YL L INNAP EP + +LA SH+QMLAGVC E+C + R D+LFG V++ FR G+ FLE LEP++ +G+L + E ++ F+ GD+ ER LLR+ R+ DF+ ++PLLRRH L SAL + GD++ E
Sbjct: 207 SSIRGCEVGIFLLGTEELRIAKLQSIKQRIDALVDAGEWLSALALSLDHFDEVIMPRLRLELQQRRSRTGAVPAAAQLGWGD---AEETESFWGAE--DLELIELNMSGQRRYSAAEEDAVQ----LLLVYLNLGINNAPREEP---------------RGGDGASYSLADSHYQMLAGVCMEYCCLLRRPDLLFGGVYDRFRKAGRTETFLELLEPFITSGQLTAIGAEAMEDFLKMASDRGDLRLVERCLLRIRVRALDFNRIIPLLRRHELFSALAHVYTVGLGDYLAPAE 476
BLAST of mRNA_H-elongata_contig58708.13363.1 vs. uniprot
Match: A0A2D4BIS2_PYTIN (Vacuolar protein sorting-associated protein 8 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BIS2_PYTIN) HSP 1 Score: 176 bits (445), Expect = 8.370e-46 Identity = 116/323 (35.91%), Postives = 164/323 (50.77%), Query Frame = 1
Query: 22 NAFRACEGRLYLLGRQELRAVRVQGWSQRVDSLVQAGEWLEALAVALDHYEQKVLPAEHAATAAAGAATGAXXXXXXXXXXXXXXSSVTETGLG-------------------GERXXXXXXXXXVGAQRRYSPPRS----------EAAEQINDLLAQYLRLAINNAPAAEPGLDSGWGGTXXXXXXXXXEARRINLAQSHFQMLAGVCAEFCAVTGRLDVLFGQVFNAFRARGQQGVFLETLEPYVLTGKLKTLSPEVLKAFVDRCQSIGDMVAAERLLLRLEPRSFDFSTLLPLLRRHRLHSALLAM-RAARGDFVGSLE 900
N+FR C+ LYLLG +EL+ RVQ W+QR+D+LV G+WLEALA+ALDHYE + A A S T G GE + + Y RS AE++ DLL +Y+RLAI NAP++ G S +++L++SH+QMLAGVC E+CA+ GR D+LFG++F F+ G+ VF+E LEPY+L+ KL+TLSP+VL+AFV + E+ LL L+ D T+L L ++H L+SAL+ + A DFV ++
Sbjct: 342 NSFRGCDNILYLLGLKELQTARVQPWTQRIDTLVDDGQWLEALALALDHYEGLKVAAVDRAVRDRFPPVFFRDRNNDQCLVDLLHMSQTNQRTGEKEDVFRHEDSADEVRWRCGEELYAPDVAQRL--EETYQKARSGQVTKNFVPISVAERVADLLMEYVRLAIANAPSSSTGGSS-----------IGRSQSKLDLSKSHYQMLAGVCIEYCAIIGRTDLLFGEIFKRFQDAGKTDVFVELLEPYILSDKLRTLSPDVLEAFVSHYDRHDKLAQVEQCLLHLQVAELDTDTILSLCKKHELYSALVYIYNEAHQDFVTPID 651
BLAST of mRNA_H-elongata_contig58708.13363.1 vs. uniprot
Match: A0A7R9Y9X4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y9X4_9STRA) HSP 1 Score: 170 bits (431), Expect = 5.830e-44 Identity = 103/294 (35.03%), Postives = 154/294 (52.38%), Query Frame = 1
Query: 22 NAFRACEGRLYLLGRQELRAVRVQGWSQRVDSLVQAGEWLEALAVALDHYEQKVLPAEHAATAAAGAATGAXXXXXXXXXXXXXXSSVTETGLGGERXXXXXXXXXVGAQRRYSPPRSEAAEQINDLLAQYLRLAINNAPAAEPGLDSGWGGTXXXXXXXXXEARRINLAQSHFQMLAGVCAEFCAVTGRLDVLFGQVFNAFRARGQQGVFLETLEPYVLTGKLKTLSPEVLKAFVDRCQSIGDMVAAERLLLRLEPRSFDFSTLLPLLRRHRLHSALLAMRA-ARGDFVGSLE 900
++FR CE ++LL +ELR ++Q QR+D+LV AGEWL AL ++LDH++ ++P A G S + QRRY+ P EA + LL YL L ++NAP E G +LA SH+QMLAGVC E+C + R D+LFG V++ FR G+Q VFL+ LEP++ +G+L T+ E ++ F+ S GD+ + ER LLR++ ++ DF+ ++PLLRRH+L SAL + GD++ +E
Sbjct: 95 SSFRGCEVGVFLLSTEELRIAKLQTIKQRIDALVDAGEWLSALGLSLDHFDDVIMPRVKRELQQRKARLGRAATSEGSDAGVETSHSSNPEEWTWTEEDRELIELNMNGQRRYTGPEEEAEK----LLLVYLDLGVSNAPKEEKG----------------DRRTGYSLANSHYQMLAGVCMEYCCLLRRPDLLFGSVYDRFRKAGRQSVFLDLLEPFITSGQLTTIGAEAMEDFLGMTSSRGDLRSVERSLLRIQVQALDFNRIIPLLRRHKLFSALARVFVKGLGDYLAPVE 368
BLAST of mRNA_H-elongata_contig58708.13363.1 vs. uniprot
Match: A0A7S2A0P8_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2A0P8_9STRA) HSP 1 Score: 167 bits (424), Expect = 4.820e-43 Identity = 109/302 (36.09%), Postives = 154/302 (50.99%), Query Frame = 1
Query: 13 THHNAFRACEGRLYLLGRQELRAVRVQGWSQRVDSLVQAGEWLEALAVALDHYEQKVLPAEHAATAAAGAATGAXXXXXXXXXXXXXXSSVTETGLGGERXXXXXXXXXVGAQRRYSPPR--SEAAEQINDLLAQYLRLAINNAP---AAEPGLDSGWGGTXXXXXXXXXEARRINLAQSHFQMLAGVCAEFCAVTGRLDVLFGQVFNAFRARGQQGVFLETLEPYVLTGKLKTLSPEVLKAFVDRCQSIGDMVAAERLLLRLEPRSFDFSTLLPLLRRHRLHSALLAMRA-ARGDFVGSLE 900
T N+ R + RL +L ++ELR+V + G QR+ +L + GEWLEALA+ALDHYE + E +R + ++ S+ E I DLL +YL LA+ NAP +PG S + RI+LAQSHFQMLAGVC EFC VT RLD+LFG +F F++ VFL+ LEPYVL KL ++P+ + FV+ C++ D+ ER LL ++ DF ++L LLR++ ++SALL + A DF+ LE
Sbjct: 197 TFLNSIRTSDNRLLVLCQEELRSVSILGTRQRIRTLEEDGEWLEALALALDHYESTIKSLE-------------------------------------DRKRDPDGRKKISNHPEFTSTSRLSDDEEWIADLLLRYLNLAVENAPEPSTEQPGTRSA---------VSRLSSTRIDLAQSHFQMLAGVCIEFCVVTRRLDLLFGPIFRRFQSVHYTNVFLDVLEPYVLNDKLHYIAPDAMAQFVEHCKASNDVATVERCLLHMDVTIMDFDSILSLLRKNDMYSALLHVFAHGLNDFITPLE 452
BLAST of mRNA_H-elongata_contig58708.13363.1 vs. uniprot
Match: A0A662WX84_9STRA (Chromo domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WX84_9STRA) HSP 1 Score: 167 bits (422), Expect = 9.630e-43 Identity = 110/307 (35.83%), Postives = 151/307 (49.19%), Query Frame = 1
Query: 22 NAFRACEGRLYLLGRQELRAVRVQGWSQRVDSLVQAGEWLEALAVALDHYEQKVLPAEHAATA----------------------------AAGAATGAXXXXXXXXXXXXXXSSVTETGLGGERXXXXXXXXXVGAQRRYSPPRSEAAEQINDLLAQYLRLAINNAPAAEPGLDSGWGGTXXXXXXXXXEARRINLAQSHFQMLAGVCAEFCAVTGRLDVLFGQVFNAFRARGQQGVFLETLEPYVLTGKLKTLSPEVLKAFVDRCQSIGDMVAAERLLLRLEPRSFDFSTLLPLLRRHRLHSALL 858
N+FR C LYLLG +EL+ RVQ W+QR+DSLV GEWLEALA+ALDHYE + A AT G V ++ G + P S AE++ DLL +Y+RLAI NAP + G + +++LA+SH+QMLAGVC E+CA+ GR D+LFG++F F+ G+ GVF+E LEPY+L+ KL++LSP ++ FV + G + E+ LL L D T+L L H L+SAL+
Sbjct: 824 NSFRGCYNILYLLGLKELQTARVQPWTQRIDSLVDEGEWLEALALALDHYEGLKIAAADRATRDRFPPVFFRDKQNDQCLVDILHMCQTNQRTGEKEDVFRHEESAEEVRWVCGEVPYPSDIAKKLEETLQKARSGEVTKNFVPIS-VAERVADLLMEYVRLAIANAPGSTSAATGELGLSKI--------GMKLDLAKSHYQMLAGVCIEYCALIGRTDLLFGEIFTRFKEAGKLGVFVELLEPYILSEKLRSLSPVAMQEFVKHFSAQGKLAQVEQCLLHLNVAELDLDTILKLCHDHELYSALI 1121
BLAST of mRNA_H-elongata_contig58708.13363.1 vs. uniprot
Match: A0A8K1FDH6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FDH6_PYTOL) HSP 1 Score: 164 bits (415), Expect = 8.070e-42 Identity = 106/305 (34.75%), Postives = 153/305 (50.16%), Query Frame = 1
Query: 22 NAFRACEGRLYLLGRQELRAVRVQGWSQRVDSLVQAGEWLEALAVALDHYEQKVLPAEHAATAAAGAATGAXXXXXXXXXXXXXXSSVTETGLGGE------------RXXXXXXXXXVGAQRR----YSPPRS----------EAAEQINDLLAQYLRLAINNAPAAEPGLDSGWGGTXXXXXXXXXEARRINLAQSHFQMLAGVCAEFCAVTGRLDVLFGQVFNAFRARGQQGVFLETLEPYVLTGKLKTLSPEVLKAFVDRCQSIGDMVAAERLLLRLEPRSFDFSTLLPLLRRHRLHSALL 858
N+FR C+ LYLLG +EL+ RVQ W+QR+D+LV+ G+WLEALA+ALDHYE + A A T G + R + ++ Y RS AE++ DLL +Y+RLAI NAP++ T +++LA+SH+QMLAGVC EFCA+ R D+LFG++F F+ G+ +F+E LEPY+L +L++LSPEV++AFV + E+ LL L D T++ L + H L+SAL+
Sbjct: 536 NSFRGCDNILYLLGLKELQTARVQPWTQRIDTLVEEGQWLEALALALDHYEGLKVAAADRAVRDRFPPVFFRDRQNDQCLVDLLHMCQTNQRTGEKEDVFRHEDGDEVRWRCGEDPYPIEISKKLEETYQKARSGQVTKNFVPISVAERVADLLMEYVRLAIANAPSSTAT-------TTSSGPSWAKNNLKLDLAKSHYQMLAGVCIEFCAIINRTDLLFGEIFKRFKDAGKTDIFVELLEPYILADRLRSLSPEVMQAFVTHYSVTDKLPQVEQCLLHLNVTELDIDTMVKLCKEHELYSALV 833
BLAST of mRNA_H-elongata_contig58708.13363.1 vs. uniprot
Match: A0A448Z7P9_9STRA (Vps8 domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z7P9_9STRA) HSP 1 Score: 162 bits (410), Expect = 3.790e-41 Identity = 101/281 (35.94%), Postives = 138/281 (49.11%), Query Frame = 1
Query: 13 THHNAFRACEGRLYLLGRQELRAVRVQGWSQRVDSLVQAGEWLEALAVALDHYEQKVLPAEHAATAAAGAATGAXXXXXXXXXXXXXXSSVTETGLGGERXXXXXXXXXVGAQRRYSPPRSEAAEQINDLLAQYLRLAINNAPAAEPGLDSGWGGTXXXXXXXXXEARRINLAQSHFQMLAGVCAEFCAVTGRLDVLFGQVFNAFRARGQQGVFLETLEPYVLTGKLKTLSPEVLKAFVDRCQSIGDMVAAERLLLRLEPRSFDFSTLLPLLRRHRLHSAL 855
T N+FR+C+ RL LL + ELR+V V G R+ L GEWLEALA+ALDHYE + E +R G Q R +E E I LL +YL +A+ NAP + +++LA+SHFQMLAGVC EFC VT RLD+L+G +F F + G VFL+ LEPY+L KL ++PE + FV+ C++ + ER LL ++ DF T+L LLR + ++SAL
Sbjct: 891 TFQNSFRSCDKRLLLLCQGELRSVSVVGARPRISGLENDGEWLEALALALDHYENTIKSQEDR-----------------------------------KRDRQKDLSKHPGLQPRNGDSLTEDEEWIAKLLIRYLNIAVENAPETNNDFN----------FPPEIRESQMDLARSHFQMLAGVCVEFCVVTKRLDLLYGPIFRRFHSAGFLSVFLDVLEPYILNDKLNYIAPEAMMHFVEHCRTNNGIATVERCLLHMDVTIMDFDTILNLLRANEMYSAL 1126
BLAST of mRNA_H-elongata_contig58708.13363.1 vs. uniprot
Match: A0A7S2VA50_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VA50_9STRA) HSP 1 Score: 160 bits (405), Expect = 1.560e-40 Identity = 101/294 (34.35%), Postives = 141/294 (47.96%), Query Frame = 1
Query: 22 NAFRACEGRLYLLGRQELRAVRVQGWSQRVDSLVQAGEWLEALAVALDHYEQKVLPAEHAATAAAGAATGAXXXXXXXXXXXXXXSSVTETGLGGERXXXXXXXXXVGAQRRYSPPRSEAAEQINDLLAQYLRLAINNAPAAEPGLDSGWGGTXXXXXXXXXEARRINLAQSHFQMLAGVCAEFCAVTGRLDVLFGQVFNAFRARGQQGVFLETLEPYVLTGKLKTLSPEVLKAFVDRCQSIGDMVAAERLLLRLEPRSFDFSTLLPLLRRHRLHSALL-AMRAARGDFVGSLE 900
N+ R + RL +L + ELR + + QR+ SL GEWLEALA+ALD+YE E +R + +S P+ E E I LL +YL LA++NAP + T RINLAQSHFQMLAGVC E+C T RLD+LFG +F F + G VFL+ LEPYVL +L ++PEV+ FV+ C+S + ER LL ++ DF +++ LLR + ++SA+ D+V L+
Sbjct: 64 NSVRCSDKRLMVLCQDELRQITMVSSRQRISSLEADGEWLEALALALDYYEGTFASQE-------------------------------------DRRRNQTTMRDLARHPEFSGPKGEEEEWIAKLLMRYLNLAVDNAPTSS---------TDDNLISLGNGRARINLAQSHFQMLAGVCVEYCVTTKRLDLLFGPIFRRFHSVGYTAVFLDVLEPYVLNDRLSYIAPEVMSYFVEHCKSNNGVATVERCLLHMDCTIMDFDSIIALLRNNDMYSAMFFVFNQGLNDYVSPLQ 311 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58708.13363.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig58708.13363.1 >prot_H-elongata_contig58708.13363.1 ID=prot_H-elongata_contig58708.13363.1|Name=mRNA_H-elongata_contig58708.13363.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=300bp MTTGTHHNAFRACEGRLYLLGRQELRAVRVQGWSQRVDSLVQAGEWLEALback to top mRNA from alignment at H-elongata_contig58708:575..2051- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig58708.13363.1 ID=mRNA_H-elongata_contig58708.13363.1|Name=mRNA_H-elongata_contig58708.13363.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1477bp|location=Sequence derived from alignment at H-elongata_contig58708:575..2051- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig58708:575..2051- >mRNA_H-elongata_contig58708.13363.1 ID=mRNA_H-elongata_contig58708.13363.1|Name=mRNA_H-elongata_contig58708.13363.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1800bp|location=Sequence derived from alignment at H-elongata_contig58708:575..2051- (Himanthalia elongata Himel1 dioecious)back to top |