mRNA_H-elongata_contig58708.13363.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig58708.13363.1
Unique NamemRNA_H-elongata_contig58708.13363.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig58708.13363.1 vs. uniprot
Match: A0A6H5JMF4_9PHAE (Vps8 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMF4_9PHAE)

HSP 1 Score: 333 bits (853), Expect = 1.940e-100
Identity = 203/329 (61.70%), Postives = 223/329 (67.78%), Query Frame = 1
Query:   10 GTHHNAFRACEGRLYLLGRQELRAVRVQGWSQRVDSLVQAGEWLEALAVALDHYEQKVLPAEHAATAA--------------------AGAATGAXXXXXXXXXXXXXXSSVTETGLGGERXXXXXXXXXVG--------AQRRYSPPRSEAAEQINDLLAQYLRLAINNAPAAEPG----LDSGWGGTXXXXXXXXXEARRINLAQSHFQMLAGVCAEFCAVTGRLDVLFGQVFNAFRARGQQGVFLETLEPYVLTGKLKTLSPEVLKAFVDRCQSIGDMVAAERLLLRLEPRSFDFSTLLPLLRRHRLHSALLAMRAARGDFVGSLE 900
            GT+HNAFRACEGRLYLLGRQELRAVRVQGWSQRV+SLVQAGEWLEALAVALDH+EQK+LPAE+AA                       A  ATG               +       GGE      XXXX             R   PRSEAAE I+DLLAQYLRLA+NNAP A+        +     XXXXXX      RINLA SHFQMLAGVCAEFCAVTGRLD+LFGQ+F AFRARGQQGVFL+TLEPYVL GKLKTLSPEV+ AF+DRCQS GDM+AAERL+LRLEPRS +  T LPLLR HRL+SALLA+ A  GD V S E
Sbjct:  851 GTYHNAFRACEGRLYLLGRQELRAVRVQGWSQRVESLVQAGEWLEALAVALDHFEQKILPAENAAAXXXXXXXXXXXXXXXXXASAHRADGATGGPLHRSGSSRDIRGVAGRMAANFGGEMLKSSSXXXXXXWPXXXXXXXXXRRPTPRSEAAEHISDLLAQYLRLAMNNAPGADSSSLHSTAAXXXXXXXXXXXGSPGGPRINLAHSHFQMLAGVCAEFCAVTGRLDMLFGQIFQAFRARGQQGVFLDTLEPYVLMGKLKTLSPEVISAFIDRCQSAGDMIAAERLVLRLEPRSLELETTLPLLRGHRLYSALLAVGALTGDHVSSAE 1179          
BLAST of mRNA_H-elongata_contig58708.13363.1 vs. uniprot
Match: D8LRX0_ECTSI (Vps8 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRX0_ECTSI)

HSP 1 Score: 239 bits (611), Expect = 5.200e-68
Identity = 137/192 (71.35%), Postives = 151/192 (78.65%), Query Frame = 1
Query:  349 QRRYSPPRSEAAEQINDLLAQYLRLAINNAPAAEPGLDSGWGGTXXXXXXXXXEAR--------RINLAQSHFQMLAGVCAEFCAVTGRLDVLFGQVFNAFRARGQQGVFLETLEPYVLTGKLKTLSPEVLKAFVDRCQSIGDMVAAERLLLRLEPRSFDFSTLLPLLRRHRLHSALLAMRAARGDFVGSLE 900
            ++R   PRSEAAE I+DLLAQYLRLA+NNAPAA+          XXXXXXXXX           RINLA SHFQMLAGVCAEFCAVTGRLD+LFGQ+F AFRARGQQGVFL+TLEPYVL GKLKTLSPEV+ AF+DRCQS GDM+AAERL+LRLEPRS +  T LPLLR HRLHSALLA+ A  GD V S E
Sbjct:  774 EQRRPAPRSEAAEHISDLLAQYLRLAMNNAPAADSSSRHSXXXXXXXXXXXXXXXXXAGSPGGPRINLAHSHFQMLAGVCAEFCAVTGRLDMLFGQIFQAFRARGQQGVFLDTLEPYVLMGKLKTLSPEVISAFIDRCQSAGDMIAAERLVLRLEPRSLELETTLPLLRGHRLHSALLAVGALTGDHVSSAE 965          
BLAST of mRNA_H-elongata_contig58708.13363.1 vs. uniprot
Match: A0A7S1XT59_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XT59_9STRA)

HSP 1 Score: 173 bits (439), Expect = 1.440e-46
Identity = 107/294 (36.39%), Postives = 155/294 (52.72%), Query Frame = 1
Query:   22 NAFRACEGRLYLLGRQELRAVRVQGWSQRVDSLVQAGEWLEALAVALDHYEQKVLPAEHAATAAAGAATGAXXXXXXXXXXXXXXSSVTETGLGGERXXXXXXXXXVGAQRRYSPPRSEAAEQINDLLAQYLRLAINNAPAAEPGLDSGWGGTXXXXXXXXXEARRINLAQSHFQMLAGVCAEFCAVTGRLDVLFGQVFNAFRARGQQGVFLETLEPYVLTGKLKTLSPEVLKAFVDRCQSIGDMVAAERLLLRLEPRSFDFSTLLPLLRRHRLHSALLAM-RAARGDFVGSLE 900
            ++ R CE  ++LLG +ELR  ++Q   QR+D+LV AGEWL ALA++LDH+++ ++P          + TGA              +  TE+  G E          +  QRRYS    +A +    LL  YL L INNAP  EP                  +    +LA SH+QMLAGVC E+C +  R D+LFG V++ FR  G+   FLE LEP++ +G+L  +  E ++ F+      GD+   ER LLR+  R+ DF+ ++PLLRRH L SAL  +     GD++   E
Sbjct:  207 SSIRGCEVGIFLLGTEELRIAKLQSIKQRIDALVDAGEWLSALALSLDHFDEVIMPRLRLELQQRRSRTGAVPAAAQLGWGD---AEETESFWGAE--DLELIELNMSGQRRYSAAEEDAVQ----LLLVYLNLGINNAPREEP---------------RGGDGASYSLADSHYQMLAGVCMEYCCLLRRPDLLFGGVYDRFRKAGRTETFLELLEPFITSGQLTAIGAEAMEDFLKMASDRGDLRLVERCLLRIRVRALDFNRIIPLLRRHELFSALAHVYTVGLGDYLAPAE 476          
BLAST of mRNA_H-elongata_contig58708.13363.1 vs. uniprot
Match: A0A2D4BIS2_PYTIN (Vacuolar protein sorting-associated protein 8 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BIS2_PYTIN)

HSP 1 Score: 176 bits (445), Expect = 8.370e-46
Identity = 116/323 (35.91%), Postives = 164/323 (50.77%), Query Frame = 1
Query:   22 NAFRACEGRLYLLGRQELRAVRVQGWSQRVDSLVQAGEWLEALAVALDHYEQKVLPAEHAATAAAGAATGAXXXXXXXXXXXXXXSSVTETGLG-------------------GERXXXXXXXXXVGAQRRYSPPRS----------EAAEQINDLLAQYLRLAINNAPAAEPGLDSGWGGTXXXXXXXXXEARRINLAQSHFQMLAGVCAEFCAVTGRLDVLFGQVFNAFRARGQQGVFLETLEPYVLTGKLKTLSPEVLKAFVDRCQSIGDMVAAERLLLRLEPRSFDFSTLLPLLRRHRLHSALLAM-RAARGDFVGSLE 900
            N+FR C+  LYLLG +EL+  RVQ W+QR+D+LV  G+WLEALA+ALDHYE   + A   A                         S T    G                   GE          +  +  Y   RS            AE++ DLL +Y+RLAI NAP++  G  S                 +++L++SH+QMLAGVC E+CA+ GR D+LFG++F  F+  G+  VF+E LEPY+L+ KL+TLSP+VL+AFV        +   E+ LL L+    D  T+L L ++H L+SAL+ +   A  DFV  ++
Sbjct:  342 NSFRGCDNILYLLGLKELQTARVQPWTQRIDTLVDDGQWLEALALALDHYEGLKVAAVDRAVRDRFPPVFFRDRNNDQCLVDLLHMSQTNQRTGEKEDVFRHEDSADEVRWRCGEELYAPDVAQRL--EETYQKARSGQVTKNFVPISVAERVADLLMEYVRLAIANAPSSSTGGSS-----------IGRSQSKLDLSKSHYQMLAGVCIEYCAIIGRTDLLFGEIFKRFQDAGKTDVFVELLEPYILSDKLRTLSPDVLEAFVSHYDRHDKLAQVEQCLLHLQVAELDTDTILSLCKKHELYSALVYIYNEAHQDFVTPID 651          
BLAST of mRNA_H-elongata_contig58708.13363.1 vs. uniprot
Match: A0A7R9Y9X4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y9X4_9STRA)

HSP 1 Score: 170 bits (431), Expect = 5.830e-44
Identity = 103/294 (35.03%), Postives = 154/294 (52.38%), Query Frame = 1
Query:   22 NAFRACEGRLYLLGRQELRAVRVQGWSQRVDSLVQAGEWLEALAVALDHYEQKVLPAEHAATAAAGAATGAXXXXXXXXXXXXXXSSVTETGLGGERXXXXXXXXXVGAQRRYSPPRSEAAEQINDLLAQYLRLAINNAPAAEPGLDSGWGGTXXXXXXXXXEARRINLAQSHFQMLAGVCAEFCAVTGRLDVLFGQVFNAFRARGQQGVFLETLEPYVLTGKLKTLSPEVLKAFVDRCQSIGDMVAAERLLLRLEPRSFDFSTLLPLLRRHRLHSALLAMRA-ARGDFVGSLE 900
            ++FR CE  ++LL  +ELR  ++Q   QR+D+LV AGEWL AL ++LDH++  ++P          A  G                S                   +  QRRY+ P  EA +    LL  YL L ++NAP  E G                      +LA SH+QMLAGVC E+C +  R D+LFG V++ FR  G+Q VFL+ LEP++ +G+L T+  E ++ F+    S GD+ + ER LLR++ ++ DF+ ++PLLRRH+L SAL  +     GD++  +E
Sbjct:   95 SSFRGCEVGVFLLSTEELRIAKLQTIKQRIDALVDAGEWLSALGLSLDHFDDVIMPRVKRELQQRKARLGRAATSEGSDAGVETSHSSNPEEWTWTEEDRELIELNMNGQRRYTGPEEEAEK----LLLVYLDLGVSNAPKEEKG----------------DRRTGYSLANSHYQMLAGVCMEYCCLLRRPDLLFGSVYDRFRKAGRQSVFLDLLEPFITSGQLTTIGAEAMEDFLGMTSSRGDLRSVERSLLRIQVQALDFNRIIPLLRRHKLFSALARVFVKGLGDYLAPVE 368          
BLAST of mRNA_H-elongata_contig58708.13363.1 vs. uniprot
Match: A0A7S2A0P8_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2A0P8_9STRA)

HSP 1 Score: 167 bits (424), Expect = 4.820e-43
Identity = 109/302 (36.09%), Postives = 154/302 (50.99%), Query Frame = 1
Query:   13 THHNAFRACEGRLYLLGRQELRAVRVQGWSQRVDSLVQAGEWLEALAVALDHYEQKVLPAEHAATAAAGAATGAXXXXXXXXXXXXXXSSVTETGLGGERXXXXXXXXXVGAQRRYSPPR--SEAAEQINDLLAQYLRLAINNAP---AAEPGLDSGWGGTXXXXXXXXXEARRINLAQSHFQMLAGVCAEFCAVTGRLDVLFGQVFNAFRARGQQGVFLETLEPYVLTGKLKTLSPEVLKAFVDRCQSIGDMVAAERLLLRLEPRSFDFSTLLPLLRRHRLHSALLAMRA-ARGDFVGSLE 900
            T  N+ R  + RL +L ++ELR+V + G  QR+ +L + GEWLEALA+ALDHYE  +   E                                     +R         +     ++     S+  E I DLL +YL LA+ NAP     +PG  S               + RI+LAQSHFQMLAGVC EFC VT RLD+LFG +F  F++     VFL+ LEPYVL  KL  ++P+ +  FV+ C++  D+   ER LL ++    DF ++L LLR++ ++SALL + A    DF+  LE
Sbjct:  197 TFLNSIRTSDNRLLVLCQEELRSVSILGTRQRIRTLEEDGEWLEALALALDHYESTIKSLE-------------------------------------DRKRDPDGRKKISNHPEFTSTSRLSDDEEWIADLLLRYLNLAVENAPEPSTEQPGTRSA---------VSRLSSTRIDLAQSHFQMLAGVCIEFCVVTRRLDLLFGPIFRRFQSVHYTNVFLDVLEPYVLNDKLHYIAPDAMAQFVEHCKASNDVATVERCLLHMDVTIMDFDSILSLLRKNDMYSALLHVFAHGLNDFITPLE 452          
BLAST of mRNA_H-elongata_contig58708.13363.1 vs. uniprot
Match: A0A662WX84_9STRA (Chromo domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WX84_9STRA)

HSP 1 Score: 167 bits (422), Expect = 9.630e-43
Identity = 110/307 (35.83%), Postives = 151/307 (49.19%), Query Frame = 1
Query:   22 NAFRACEGRLYLLGRQELRAVRVQGWSQRVDSLVQAGEWLEALAVALDHYEQKVLPAEHAATA----------------------------AAGAATGAXXXXXXXXXXXXXXSSVTETGLGGERXXXXXXXXXVGAQRRYSPPRSEAAEQINDLLAQYLRLAINNAPAAEPGLDSGWGGTXXXXXXXXXEARRINLAQSHFQMLAGVCAEFCAVTGRLDVLFGQVFNAFRARGQQGVFLETLEPYVLTGKLKTLSPEVLKAFVDRCQSIGDMVAAERLLLRLEPRSFDFSTLLPLLRRHRLHSALL 858
            N+FR C   LYLLG +EL+  RVQ W+QR+DSLV  GEWLEALA+ALDHYE   + A   AT                               G                     V       ++          G   +   P S  AE++ DLL +Y+RLAI NAP +        G +            +++LA+SH+QMLAGVC E+CA+ GR D+LFG++F  F+  G+ GVF+E LEPY+L+ KL++LSP  ++ FV    + G +   E+ LL L     D  T+L L   H L+SAL+
Sbjct:  824 NSFRGCYNILYLLGLKELQTARVQPWTQRIDSLVDEGEWLEALALALDHYEGLKIAAADRATRDRFPPVFFRDKQNDQCLVDILHMCQTNQRTGEKEDVFRHEESAEEVRWVCGEVPYPSDIAKKLEETLQKARSGEVTKNFVPIS-VAERVADLLMEYVRLAIANAPGSTSAATGELGLSKI--------GMKLDLAKSHYQMLAGVCIEYCALIGRTDLLFGEIFTRFKEAGKLGVFVELLEPYILSEKLRSLSPVAMQEFVKHFSAQGKLAQVEQCLLHLNVAELDLDTILKLCHDHELYSALI 1121          
BLAST of mRNA_H-elongata_contig58708.13363.1 vs. uniprot
Match: A0A8K1FDH6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FDH6_PYTOL)

HSP 1 Score: 164 bits (415), Expect = 8.070e-42
Identity = 106/305 (34.75%), Postives = 153/305 (50.16%), Query Frame = 1
Query:   22 NAFRACEGRLYLLGRQELRAVRVQGWSQRVDSLVQAGEWLEALAVALDHYEQKVLPAEHAATAAAGAATGAXXXXXXXXXXXXXXSSVTETGLGGE------------RXXXXXXXXXVGAQRR----YSPPRS----------EAAEQINDLLAQYLRLAINNAPAAEPGLDSGWGGTXXXXXXXXXEARRINLAQSHFQMLAGVCAEFCAVTGRLDVLFGQVFNAFRARGQQGVFLETLEPYVLTGKLKTLSPEVLKAFVDRCQSIGDMVAAERLLLRLEPRSFDFSTLLPLLRRHRLHSALL 858
            N+FR C+  LYLLG +EL+  RVQ W+QR+D+LV+ G+WLEALA+ALDHYE   + A   A                           T    G +            R         +   ++    Y   RS            AE++ DLL +Y+RLAI NAP++          T            +++LA+SH+QMLAGVC EFCA+  R D+LFG++F  F+  G+  +F+E LEPY+L  +L++LSPEV++AFV        +   E+ LL L     D  T++ L + H L+SAL+
Sbjct:  536 NSFRGCDNILYLLGLKELQTARVQPWTQRIDTLVEEGQWLEALALALDHYEGLKVAAADRAVRDRFPPVFFRDRQNDQCLVDLLHMCQTNQRTGEKEDVFRHEDGDEVRWRCGEDPYPIEISKKLEETYQKARSGQVTKNFVPISVAERVADLLMEYVRLAIANAPSSTAT-------TTSSGPSWAKNNLKLDLAKSHYQMLAGVCIEFCAIINRTDLLFGEIFKRFKDAGKTDIFVELLEPYILADRLRSLSPEVMQAFVTHYSVTDKLPQVEQCLLHLNVTELDIDTMVKLCKEHELYSALV 833          
BLAST of mRNA_H-elongata_contig58708.13363.1 vs. uniprot
Match: A0A448Z7P9_9STRA (Vps8 domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z7P9_9STRA)

HSP 1 Score: 162 bits (410), Expect = 3.790e-41
Identity = 101/281 (35.94%), Postives = 138/281 (49.11%), Query Frame = 1
Query:   13 THHNAFRACEGRLYLLGRQELRAVRVQGWSQRVDSLVQAGEWLEALAVALDHYEQKVLPAEHAATAAAGAATGAXXXXXXXXXXXXXXSSVTETGLGGERXXXXXXXXXVGAQRRYSPPRSEAAEQINDLLAQYLRLAINNAPAAEPGLDSGWGGTXXXXXXXXXEARRINLAQSHFQMLAGVCAEFCAVTGRLDVLFGQVFNAFRARGQQGVFLETLEPYVLTGKLKTLSPEVLKAFVDRCQSIGDMVAAERLLLRLEPRSFDFSTLLPLLRRHRLHSAL 855
            T  N+FR+C+ RL LL + ELR+V V G   R+  L   GEWLEALA+ALDHYE  +   E                                     +R          G Q R     +E  E I  LL +YL +A+ NAP      +                  +++LA+SHFQMLAGVC EFC VT RLD+L+G +F  F + G   VFL+ LEPY+L  KL  ++PE +  FV+ C++   +   ER LL ++    DF T+L LLR + ++SAL
Sbjct:  891 TFQNSFRSCDKRLLLLCQGELRSVSVVGARPRISGLENDGEWLEALALALDHYENTIKSQEDR-----------------------------------KRDRQKDLSKHPGLQPRNGDSLTEDEEWIAKLLIRYLNIAVENAPETNNDFN----------FPPEIRESQMDLARSHFQMLAGVCVEFCVVTKRLDLLYGPIFRRFHSAGFLSVFLDVLEPYILNDKLNYIAPEAMMHFVEHCRTNNGIATVERCLLHMDVTIMDFDTILNLLRANEMYSAL 1126          
BLAST of mRNA_H-elongata_contig58708.13363.1 vs. uniprot
Match: A0A7S2VA50_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VA50_9STRA)

HSP 1 Score: 160 bits (405), Expect = 1.560e-40
Identity = 101/294 (34.35%), Postives = 141/294 (47.96%), Query Frame = 1
Query:   22 NAFRACEGRLYLLGRQELRAVRVQGWSQRVDSLVQAGEWLEALAVALDHYEQKVLPAEHAATAAAGAATGAXXXXXXXXXXXXXXSSVTETGLGGERXXXXXXXXXVGAQRRYSPPRSEAAEQINDLLAQYLRLAINNAPAAEPGLDSGWGGTXXXXXXXXXEARRINLAQSHFQMLAGVCAEFCAVTGRLDVLFGQVFNAFRARGQQGVFLETLEPYVLTGKLKTLSPEVLKAFVDRCQSIGDMVAAERLLLRLEPRSFDFSTLLPLLRRHRLHSALL-AMRAARGDFVGSLE 900
            N+ R  + RL +L + ELR + +    QR+ SL   GEWLEALA+ALD+YE      E                                     +R         +     +S P+ E  E I  LL +YL LA++NAP +          T            RINLAQSHFQMLAGVC E+C  T RLD+LFG +F  F + G   VFL+ LEPYVL  +L  ++PEV+  FV+ C+S   +   ER LL ++    DF +++ LLR + ++SA+         D+V  L+
Sbjct:   64 NSVRCSDKRLMVLCQDELRQITMVSSRQRISSLEADGEWLEALALALDYYEGTFASQE-------------------------------------DRRRNQTTMRDLARHPEFSGPKGEEEEWIAKLLMRYLNLAVDNAPTSS---------TDDNLISLGNGRARINLAQSHFQMLAGVCVEYCVTTKRLDLLFGPIFRRFHSVGYTAVFLDVLEPYVLNDRLSYIAPEVMSYFVEHCKSNNGVATVERCLLHMDCTIMDFDSIIALLRNNDMYSAMFFVFNQGLNDYVSPLQ 311          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58708.13363.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JMF4_9PHAE1.940e-10061.70Vps8 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LRX0_ECTSI5.200e-6871.35Vps8 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S1XT59_9STRA1.440e-4636.39Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A2D4BIS2_PYTIN8.370e-4635.91Vacuolar protein sorting-associated protein 8 n=1 ... [more]
A0A7R9Y9X4_9STRA5.830e-4435.03Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2A0P8_9STRA4.820e-4336.09Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A662WX84_9STRA9.630e-4335.83Chromo domain-containing protein n=2 Tax=Nothophyt... [more]
A0A8K1FDH6_PYTOL8.070e-4234.75Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A448Z7P9_9STRA3.790e-4135.94Vps8 domain-containing protein n=1 Tax=Pseudo-nitz... [more]
A0A7S2VA50_9STRA1.560e-4034.35Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58708contigH-elongata_contig58708:575..2051 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score240.0
Seed ortholog evalue1.5e-60
Seed eggNOG ortholog2880.D8LRX0
KEGG koko:K20178
KEGG Pathwayko04138,map04138
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0006810,GO:0006886,GO:0006906,GO:0006996,GO:0007034,GO:0008104,GO:0008150,GO:0008270,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0016050,GO:0016192,GO:0031410,GO:0031982,GO:0032991,GO:0033036,GO:0033263,GO:0034058,GO:0034613,GO:0042886,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0044422,GO:0044424,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045324,GO:0046872,GO:0046907,GO:0046914,GO:0048284,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061024,GO:0061025,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0090174,GO:0097708,GO:0099023
EggNOG free text desc.endosomal vesicle fusion
EggNOG OGsKOG2079@1,KOG2079@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWD40/YVTN repeat-like-containing domain
Ec32 orthologEc-08_002740.1
Exons3
Model size900
Cds size900
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58708.13363.1prot_H-elongata_contig58708.13363.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig58708 575..2051 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930951.6797888-CDS-H-elongata_contig58708:574..7331622930951.6797888-CDS-H-elongata_contig58708:574..733Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58708 575..733 -
1691679637.97375-CDS-H-elongata_contig58708:574..7331691679637.97375-CDS-H-elongata_contig58708:574..733Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58708 575..733 -
1622930951.73861-CDS-H-elongata_contig58708:1134..12281622930951.73861-CDS-H-elongata_contig58708:1134..1228Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58708 1135..1228 -
1691679637.9866643-CDS-H-elongata_contig58708:1134..12281691679637.9866643-CDS-H-elongata_contig58708:1134..1228Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58708 1135..1228 -
1622930951.7577863-CDS-H-elongata_contig58708:1404..20511622930951.7577863-CDS-H-elongata_contig58708:1404..2051Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58708 1405..2051 -
1691679638.0039704-CDS-H-elongata_contig58708:1404..20511691679638.0039704-CDS-H-elongata_contig58708:1404..2051Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58708 1405..2051 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig58708.13363.1

>prot_H-elongata_contig58708.13363.1 ID=prot_H-elongata_contig58708.13363.1|Name=mRNA_H-elongata_contig58708.13363.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=300bp
MTTGTHHNAFRACEGRLYLLGRQELRAVRVQGWSQRVDSLVQAGEWLEAL
AVALDHYEQKVLPAEHAATAAAGAATGAPAGGGELGGGGVGGSSVTETGL
GGERGSGRAGSGGVGAQRRYSPPRSEAAEQINDLLAQYLRLAINNAPAAE
PGLDSGWGGTGGTGGGGGGEARRINLAQSHFQMLAGVCAEFCAVTGRLDV
LFGQVFNAFRARGQQGVFLETLEPYVLTGKLKTLSPEVLKAFVDRCQSIG
DMVAAERLLLRLEPRSFDFSTLLPLLRRHRLHSALLAMRAARGDFVGSLE
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mRNA from alignment at H-elongata_contig58708:575..2051-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig58708.13363.1 ID=mRNA_H-elongata_contig58708.13363.1|Name=mRNA_H-elongata_contig58708.13363.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1477bp|location=Sequence derived from alignment at H-elongata_contig58708:575..2051- (Himanthalia elongata Himel1 dioecious)
ATGACGACGGGCACGCACCACAACGCCTTCCGTGCCTGCGAAGGGAGGCT GTACCTCCTCGGTAGGCAGGAGCTGAGGGCAGTCAGGGTCCAGGGGTGGT CGCAGCGGGTGGACTCGCTCGTCCAGGCCGGGGAGTGGCTCGAGGCCCTT GCGGTGGCGCTGGATCACTACGAGCAGAAGGTTCTGCCGGCAGAGCACGC GGCGACGGCGGCGGCGGGGGCGGCAACGGGAGCTCCTGCGGGGGGGGGGG AGTTGGGGGGGGGGGGGGTCGGGGGGAGTTCGGTCACGGAGACCGGCCTC GGGGGGGAGAGAGGGTCGGGTCGAGCGGGAAGTGGAGGGGTTGGCGCTCA GAGGAGGTATTCTCCGCCGAGGTCCGAAGCCGCGGAGCAGATCAACGATC TTCTGGCGCAATATTTGCGCCTCGCAATCAACAATGCGCCCGCGGCAGAA CCTGGCTTGGACTCGGGATGGGGGGGCACCGGCGGCACCGGCGGAGGTGG GGGGGGTGAAGCAAGGAGGATTAATCTGGCGCAGAGCCACTTTCAGATGC TGGCCGGGGTATGCGCGGAGTTCTGCGCGGTGACCGGGAGGCTGGACGTC CTGTTTGGACAGGTTTTCAACGCGTTTCGGGCGCGGGGACAGCAAGGGTG AGAAGGGAGGGGGCGGATGGAACGAGGCCACACACGAAGATGATGTGCAC TGCTAATACTGACTTCATGCGCGCAAATGAAGGCTGTTGACGATTTACGC GTATGATATTTGAAGAGTGTGTAACGTCTTCATGCGTCGGCGTTTGCTGC ATCCCCTCGACGGCTTGCCACAGAGTATTCTTGGAAACCCTAGAGCCGTA TGTGCTGACGGGTAAGTTGAAGACGCTTTCCCCGGAGGTGCTGAAGGCGT TCGTAGACAGGTGTCAGGTATGCTACTCACTTCCTGTCTACCTATGTCCC AGGCCTTTCCGTTTCACTGTAACCCTGTTGATAACGGTCCCCGGGGGAGT TGTAGAGAATGTGGGCGTTTGGTTCTGATCCGTGGATATGGGAGAAAAGG CCTGCTTCGTTACTTCGCGTGAAATAAAAAAAACGCTCGACAGTTTCATC CTTACTACGCAGTGTAGTACCGGTAGGTGTGATATTGGATGTAATAAGGT ACTTGTTTTACTCATTCAATATTTCCCTTCGCAGGGCGTGCTGTCACAGC AACAGTCCGCGTGTCTCAAAAAAGAGGCGTTTTCCTGTTTCCTTCCTGCT TGTTTATTTTCCTAAAACAATCGATCCATTCATAATCGTGCGGAACACAT GAAAATACACACCCAAAGAGCATCGGCGACATGGTGGCGGCGGAACGCCT CCTGCTGCGACTGGAACCCCGTTCGTTCGACTTCTCCACCCTGCTCCCTC TGCTTCGTCGGCACCGGCTGCACTCCGCGCTGCTGGCGATGCGTGCGGCC AGAGGCGATTTCGTTGGTTCGCTAGAG
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Coding sequence (CDS) from alignment at H-elongata_contig58708:575..2051-

>mRNA_H-elongata_contig58708.13363.1 ID=mRNA_H-elongata_contig58708.13363.1|Name=mRNA_H-elongata_contig58708.13363.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1800bp|location=Sequence derived from alignment at H-elongata_contig58708:575..2051- (Himanthalia elongata Himel1 dioecious)
ATGACGACGGGCACGCACCACAACGCCTTCCGTGCCTGCGAAGGGAGGCT
GTACCTCCTCGGTAGGCAGGAGCTGAGGGCAGTCAGGGTCCAGGGGTGGT
CGCAGCGGGTGGACTCGCTCGTCCAGGCCGGGGAGTGGCTCGAGGCCCTT
GCGGTGGCGCTGGATCACTACGAGCAGAAGGTTCTGCCGGCAGAGCACGC
GGCGACGGCGGCGGCGGGGGCGGCAACGGGAGCTCCTGCGGGGGGGGGGG
AGTTGGGGGGGGGGGGGGTCGGGGGGAGTTCGGTCACGGAGACCGGCCTC
GGGGGGGAGAGAGGGTCGGGTCGAGCGGGAAGTGGAGGGGTTGGCGCTCA
GAGGAGGTATTCTCCGCCGAGGTCCGAAGCCGCGGAGCAGATCAACGATC
TTCTGGCGCAATATTTGCGCCTCGCAATCAACAATGCGCCCGCGGCAGAA
CCTGGCTTGGACTCGGGATGGGGGGGCACCGGCGGCACCGGCGGAGGTGG
GGGGGGTGAAGCAAGGAGGATTAATCTGGCGCAGAGCCACTTTCAGATGC
TGGCCGGGGTATGCGCGGAGTTCTGCGCGGTGACCGGGAGGCTGGACGTC
CTGTTTGGACAGGTTTTCAACGCGTTTCGGGCGCGGGGACAGCAAGGATG
ACGACGGGCACGCACCACAACGCCTTCCGTGCCTGCGAAGGGAGGCTGTA
CCTCCTCGGTAGGCAGGAGCTGAGGGCAGTCAGGGTCCAGGGGTGGTCGC
AGCGGGTGGACTCGCTCGTCCAGGCCGGGGAGTGGCTCGAGGCCCTTGCG
GTGGCGCTGGATCACTACGAGCAGAAGGTTCTGCCGGCAGAGCACGCGGC
GACGGCGGCGGCGGGGGCGGCAACGGGAGCTCCTGCGGGGGGGGGGGAGT
TGGGGGGGGGGGGGGTCGGGGGGAGTTCGGTCACGGAGACCGGCCTCGGG
GGGGAGAGAGGGTCGGGTCGAGCGGGAAGTGGAGGGGTTGGCGCTCAGAG
GAGGTATTCTCCGCCGAGGTCCGAAGCCGCGGAGCAGATCAACGATCTTC
TGGCGCAATATTTGCGCCTCGCAATCAACAATGCGCCCGCGGCAGAACCT
GGCTTGGACTCGGGATGGGGGGGCACCGGCGGCACCGGCGGAGGTGGGGG
GGGTGAAGCAAGGAGGATTAATCTGGCGCAGAGCCACTTTCAGATGCTGG
CCGGGGTATGCGCGGAGTTCTGCGCGGTGACCGGGAGGCTGGACGTCCTG
TTTGGACAGGTTTTCAACGCGTTTCGGGCGCGGGGACAGCAAGGAGTATT
CTTGGAAACCCTAGAGCCGTATGTGCTGACGGGTAAGTTGAAGACGCTTT
CCCCGGAGGTGCTGAAGGCGTTCGTAGACAGGTGTCAGAGTATTCTTGGA
AACCCTAGAGCCGTATGTGCTGACGGGTAAGTTGAAGACGCTTTCCCCGG
AGGTGCTGAAGGCGTTCGTAGACAGGTGTCAGAGCATCGGCGACATGGTG
GCGGCGGAACGCCTCCTGCTGCGACTGGAACCCCGTTCGTTCGACTTCTC
CACCCTGCTCCCTCTGCTTCGTCGGCACCGGCTGCACTCCGCGCTGCTGG
CGATGCGTGCGGCCAGAGGCGATTTCGTTGGTTCGCTAGAGAGCATCGGC
GACATGGTGGCGGCGGAACGCCTCCTGCTGCGACTGGAACCCCGTTCGTT
CGACTTCTCCACCCTGCTCCCTCTGCTTCGTCGGCACCGGCTGCACTCCG
CGCTGCTGGCGATGCGTGCGGCCAGAGGCGATTTCGTTGGTTCGCTAGAG
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