mRNA_H-elongata_contig57903.13264.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57903.13264.1
Unique NamemRNA_H-elongata_contig57903.13264.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig57903.13264.1 vs. uniprot
Match: D8LMK6_ECTSI (ULP_PROTEASE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMK6_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 5.280e-18
Identity = 45/66 (68.18%), Postives = 50/66 (75.76%), Query Frame = 1
Query:   19 LQCLHPLTWLNDEVVNMYMLLLDERDK---KEHPSRRRSHFFSSFFLTKL-AEGGKYRYAGVRRWT 204
            L+CL P TWLNDEVVNMYM LL  RDK   K +PSRR+SHFF+SFFLTKL     KY Y GV+RWT
Sbjct:  380 LKCLRPYTWLNDEVVNMYMQLLSCRDKELCKANPSRRQSHFFTSFFLTKLKGMDCKYNYTGVKRWT 445          
BLAST of mRNA_H-elongata_contig57903.13264.1 vs. uniprot
Match: K3WMB9_GLOUD (ULP_PROTEASE domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WMB9_GLOUD)

HSP 1 Score: 83.2 bits (204), Expect = 4.310e-17
Identity = 41/65 (63.08%), Postives = 49/65 (75.38%), Query Frame = 1
Query:   19 LQCLHPLTWLNDEVVNMYMLLLDERDK---KEHPSRRRSHFFSSFFLTKLAEGGKYRYAGVRRWT 204
            LQCLHPL WLNDEV+N YM LL ERD+   K+    +RSHFF+SFF TK++EGG Y +  VRRWT
Sbjct:  266 LQCLHPLQWLNDEVINFYMQLLMERDERLVKDGTLEKRSHFFNSFFYTKVSEGG-YNFVNVRRWT 329          
BLAST of mRNA_H-elongata_contig57903.13264.1 vs. uniprot
Match: A0A1S4ASZ6_TOBAC (ubiquitin-like-specific protease ESD4 isoform X2 n=1 Tax=Nicotiana tabacum TaxID=4097 RepID=A0A1S4ASZ6_TOBAC)

HSP 1 Score: 76.6 bits (187), Expect = 1.000e-15
Identity = 36/68 (52.94%), Postives = 46/68 (67.65%), Query Frame = 1
Query:    4 VCAELLQCLHPLTWLNDEVVNMYMLLLDERDKKEHPSRRRSHFFSSFFLTKLAEG-GKYRYAGVRRWT 204
            +  E+LQCL P  WLNDEV+N+Y+ LL ER+K+E     R HFF++FF  KL  G G Y Y  V+RWT
Sbjct:  112 ITGEILQCLRPRAWLNDEVINVYLELLKEREKREPKRFLRCHFFNTFFYKKLISGKGGYNYQSVKRWT 179          
BLAST of mRNA_H-elongata_contig57903.13264.1 vs. uniprot
Match: UPI00053AD05C (putative ubiquitin-like-specific protease 1B isoform X1 n=4 Tax=Camelina sativa TaxID=90675 RepID=UPI00053AD05C)

HSP 1 Score: 78.2 bits (191), Expect = 2.040e-15
Identity = 34/67 (50.75%), Postives = 44/67 (65.67%), Query Frame = 1
Query:    4 VCAELLQCLHPLTWLNDEVVNMYMLLLDERDKKEHPSRRRSHFFSSFFLTKLAEGGKYRYAGVRRWT 204
            +C E LQCL P  WLNDEV+N+Y+ LL ER+ ++     + HFF++FF  KL  G  Y Y  VRRWT
Sbjct:  177 ICGETLQCLMPTRWLNDEVINLYLELLKEREARDPQKYFKCHFFNTFFYIKLVSGSCYNYQAVRRWT 243          
BLAST of mRNA_H-elongata_contig57903.13264.1 vs. uniprot
Match: A0A1S4AT45_TOBAC (ubiquitin-like-specific protease ESD4 isoform X1 n=1 Tax=Nicotiana tabacum TaxID=4097 RepID=A0A1S4AT45_TOBAC)

HSP 1 Score: 76.6 bits (187), Expect = 2.890e-15
Identity = 36/68 (52.94%), Postives = 46/68 (67.65%), Query Frame = 1
Query:    4 VCAELLQCLHPLTWLNDEVVNMYMLLLDERDKKEHPSRRRSHFFSSFFLTKLAEG-GKYRYAGVRRWT 204
            +  E+LQCL P  WLNDEV+N+Y+ LL ER+K+E     R HFF++FF  KL  G G Y Y  V+RWT
Sbjct:  112 ITGEILQCLRPRAWLNDEVINVYLELLKEREKREPKRFLRCHFFNTFFYKKLISGKGGYNYQSVKRWT 179          
BLAST of mRNA_H-elongata_contig57903.13264.1 vs. uniprot
Match: A9TDR5_PHYPA (Predicted protein (Fragment) n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9TDR5_PHYPA)

HSP 1 Score: 75.5 bits (184), Expect = 3.370e-15
Identity = 35/67 (52.24%), Postives = 45/67 (67.16%), Query Frame = 1
Query:    4 VCAELLQCLHPLTWLNDEVVNMYMLLLDERDKKEHPSRRRSHFFSSFFLTKLAEGGKYRYAGVRRWT 204
            V  E+LQCL P +WLNDEV+N+YM LL ER+ +E     + HFF+SFF  K+ +   Y Y  VRRWT
Sbjct:   15 VTGEILQCLLPGSWLNDEVINVYMELLKERESREPEKFLKCHFFNSFFYNKVQDAQSYDYQAVRRWT 81          
BLAST of mRNA_H-elongata_contig57903.13264.1 vs. uniprot
Match: UPI000B78DA3B (ubiquitin-like-specific protease ESD4 n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=UPI000B78DA3B)

HSP 1 Score: 77.8 bits (190), Expect = 3.630e-15
Identity = 37/68 (54.41%), Postives = 47/68 (69.12%), Query Frame = 1
Query:    4 VCAELLQCLHPLTWLNDEVVNMYMLLLDERDKKEHPSRRRSHFFSSFFLTKLAEGGK-YRYAGVRRWT 204
            +  E+LQCL P  WLNDEV+N+Y+ LL ER+K+E     + HFFS+FF  KL  GG+ Y Y  VRRWT
Sbjct:  304 ITGEILQCLGPGAWLNDEVINLYLELLKEREKREPQKFLKCHFFSTFFYKKLTSGGEFYDYRAVRRWT 371          
BLAST of mRNA_H-elongata_contig57903.13264.1 vs. uniprot
Match: A0A8K0HRI5_9ROSA (Uncharacterized protein n=1 Tax=Rhamnella rubrinervis TaxID=2594499 RepID=A0A8K0HRI5_9ROSA)

HSP 1 Score: 77.4 bits (189), Expect = 4.980e-15
Identity = 34/67 (50.75%), Postives = 45/67 (67.16%), Query Frame = 1
Query:    4 VCAELLQCLHPLTWLNDEVVNMYMLLLDERDKKEHPSRRRSHFFSSFFLTKLAEGGKYRYAGVRRWT 204
            +  E+LQCL P  WLNDEV+N+Y+ LL ER+K++     + HFF++FF  KL  G  Y Y  VRRWT
Sbjct:  309 ITGEVLQCLRPGAWLNDEVINLYLELLKEREKRDPQKFLKCHFFNTFFYKKLISGSGYEYKSVRRWT 375          
BLAST of mRNA_H-elongata_contig57903.13264.1 vs. uniprot
Match: A0A6P6WS48_COFAR (ubiquitin-like-specific protease ESD4 n=1 Tax=Coffea arabica TaxID=13443 RepID=A0A6P6WS48_COFAR)

HSP 1 Score: 76.3 bits (186), Expect = 6.390e-15
Identity = 35/69 (50.72%), Postives = 46/69 (66.67%), Query Frame = 1
Query:    1 TVCAELLQCLHPLTWLNDEVVNMYMLLLDERDKKEHPSRRRSHFFSSFFLTKLAEG-GKYRYAGVRRWT 204
            ++  E+LQCL P  WLNDEV+N+Y+ LL ER+++E       HFF++FF  KL  G G Y Y  VRRWT
Sbjct:  104 SITGEVLQCLRPRAWLNDEVINLYLELLKERERREPKKFLNCHFFNTFFFKKLVSGKGGYNYQSVRRWT 172          
BLAST of mRNA_H-elongata_contig57903.13264.1 vs. uniprot
Match: A0A6P4AVM9_ZIZJJ (ubiquitin-like-specific protease ESD4 n=4 Tax=Ziziphus jujuba TaxID=326968 RepID=A0A6P4AVM9_ZIZJJ)

HSP 1 Score: 76.6 bits (187), Expect = 9.300e-15
Identity = 34/67 (50.75%), Postives = 45/67 (67.16%), Query Frame = 1
Query:    4 VCAELLQCLHPLTWLNDEVVNMYMLLLDERDKKEHPSRRRSHFFSSFFLTKLAEGGKYRYAGVRRWT 204
            +  E+LQCL P  WLNDEV+N+Y+ LL ER+K++     + HFF++FF  KL  G  Y Y  VRRWT
Sbjct:  307 ITGEVLQCLRPGAWLNDEVINLYLELLKEREKRDPQKFLKCHFFNTFFYKKLISGNGYDYKSVRRWT 373          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57903.13264.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMK6_ECTSI5.280e-1868.18ULP_PROTEASE domain-containing protein n=1 Tax=Ect... [more]
K3WMB9_GLOUD4.310e-1763.08ULP_PROTEASE domain-containing protein n=1 Tax=Glo... [more]
A0A1S4ASZ6_TOBAC1.000e-1552.94ubiquitin-like-specific protease ESD4 isoform X2 n... [more]
UPI00053AD05C2.040e-1550.75putative ubiquitin-like-specific protease 1B isofo... [more]
A0A1S4AT45_TOBAC2.890e-1552.94ubiquitin-like-specific protease ESD4 isoform X1 n... [more]
A9TDR5_PHYPA3.370e-1552.24Predicted protein (Fragment) n=1 Tax=Physcomitrium... [more]
UPI000B78DA3B3.630e-1554.41ubiquitin-like-specific protease ESD4 n=1 Tax=Heve... [more]
A0A8K0HRI5_9ROSA4.980e-1550.75Uncharacterized protein n=1 Tax=Rhamnella rubriner... [more]
A0A6P6WS48_COFAR6.390e-1550.72ubiquitin-like-specific protease ESD4 n=1 Tax=Coff... [more]
A0A6P4AVM9_ZIZJJ9.300e-1550.75ubiquitin-like-specific protease ESD4 n=4 Tax=Zizi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57903contigH-elongata_contig57903:2523..3516 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.4
Seed ortholog evalue2.8e-15
Seed eggNOG ortholog2880.D8LMK6
KEGG koko:K08592
EggNOG free text desc.protein modification by small protein removal
EggNOG OGsCOG5160@1,KOG0778@2759
Ec32 ortholog descriptionPeptidase C48, SUMO/Sentrin/Ubl1
Ec32 orthologEc-05_003090.1
EC3.4.22.68
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size204
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930939.8791082-CDS-H-elongata_contig57903:2522..26241622930939.8791082-CDS-H-elongata_contig57903:2522..2624Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57903 2523..2624 +
1691679633.1487603-CDS-H-elongata_contig57903:2522..26241691679633.1487603-CDS-H-elongata_contig57903:2522..2624Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57903 2523..2624 +
1622930939.8961554-CDS-H-elongata_contig57903:3414..35161622930939.8961554-CDS-H-elongata_contig57903:3414..3516Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57903 3415..3516 +
1691679633.164989-CDS-H-elongata_contig57903:3414..35161691679633.164989-CDS-H-elongata_contig57903:3414..3516Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57903 3415..3516 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57903.13264.1prot_H-elongata_contig57903.13264.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57903 2523..3516 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57903.13264.1

>prot_H-elongata_contig57903.13264.1 ID=prot_H-elongata_contig57903.13264.1|Name=mRNA_H-elongata_contig57903.13264.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=68bp
TVCAELLQCLHPLTWLNDEVVNMYMLLLDERDKKEHPSRRRSHFFSSFFL
TKLAEGGKYRYAGVRRWT
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mRNA from alignment at H-elongata_contig57903:2523..3516+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57903.13264.1 ID=mRNA_H-elongata_contig57903.13264.1|Name=mRNA_H-elongata_contig57903.13264.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=994bp|location=Sequence derived from alignment at H-elongata_contig57903:2523..3516+ (Himanthalia elongata Himel1 dioecious)
ACCGTGTGTGCCGAGCTATTACAGTGCCTTCACCCGCTGACGTGGCTGAA CGACGAGGTTGTGAACATGTACATGCTGCTGCTAGACGAGAGGGACAAAA AGGTGGGCTGTCATGGATCTGACCGTAGAGTGGTACAGAAGAACCAGGAC CATAACTTGTGTATCGTAATTTAAAAGAGTGCTACCCACCCCGCCCCCCC CACATATTTTCTTAAGATGGACTGTGACATAATCCGTCGCTTGCTGTCCC CGGGGTTATTCATACAACTCGTTCACTTGTGCTGACGGCGTGTTTTTAGC CACACCCCTTCAACAAAACAAAAACGGCGAAGTGCAAGGCTTGTTGTATA GAAACAAGGAATTTGGTGGATTTTGGTCGCCTGGGGGTTATATTTATTCA CCCGCTGTACATAGTTACTGGAGCAGTTAATCGCCTTCCGACCAAGTGCG TAACACGTGCCTCGCCTTTTACTCTGTTTTCTGATGTCTCGGGTGCTCGA TGCTCGTCGATCACGATAGCTTGGCGTTGGCGCCCCACAGACTTCCGCAG GGCTATCGCAATCAGATAACTAAATCCGCGTTAATTAATTACATCATACA GCGCTCACGGTGTTGTGATTGTCTTCTATGCTTCCAAATCTCAACGCTTG GTCTTATCAAACCTTCACTGAGGCCAGGCGCGCATCAGGCCGGTAACAAC ATCATTGGACTCTTATTAATATAATCACACTTAGCGTCCGACAGGGGCAG CGCAGTACAGTACCATTATTATTTTTTTAAAGAGGATGTGGCCGAGCGGG AGCGCGTGCTATGTGGCGTGTTCGGCCGAAAAAAGCGTTTCTTCCCTCCC TCGCGTGCGCGCGCAACTCTCGTGCGGTTCAAGTTGTGCGAGGAACATCC TTCCCGGAGGCGCTCGCATTTCTTTTCTTCTTTCTTTTTAACCAAGTTGG CGGAGGGTGGAAAGTATCGCTACGCCGGCGTAAGGAGATGGACA
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Coding sequence (CDS) from alignment at H-elongata_contig57903:2523..3516+

>mRNA_H-elongata_contig57903.13264.1 ID=mRNA_H-elongata_contig57903.13264.1|Name=mRNA_H-elongata_contig57903.13264.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at H-elongata_contig57903:2523..3516+ (Himanthalia elongata Himel1 dioecious)
ACCGTGTGTGCCGAGCTATTACAGTGCCTTCACCCGCTGACGTGGCTGAA
CGACGAGGTTGTGAACATGTACATGCTGCTGCTAGACGAGAGGGACAAAA
AGACCGTGTGTGCCGAGCTATTACAGTGCCTTCACCCGCTGACGTGGCTG
AACGACGAGGTTGTGAACATGTACATGCTGCTGCTAGACGAGAGGGACAA
AAAGGAACATCCTTCCCGGAGGCGCTCGCATTTCTTTTCTTCTTTCTTTT
TAACCAAGTTGGCGGAGGGTGGAAAGTATCGCTACGCCGGCGTAAGGAGA
TGGACAGAACATCCTTCCCGGAGGCGCTCGCATTTCTTTTCTTCTTTCTT
TTTAACCAAGTTGGCGGAGGGTGGAAAGTATCGCTACGCCGGCGTAAGGA
GATGGACA
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