mRNA_H-elongata_contig57903.13264.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig57903.13264.1 vs. uniprot
Match: D8LMK6_ECTSI (ULP_PROTEASE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMK6_ECTSI) HSP 1 Score: 85.9 bits (211), Expect = 5.280e-18 Identity = 45/66 (68.18%), Postives = 50/66 (75.76%), Query Frame = 1
Query: 19 LQCLHPLTWLNDEVVNMYMLLLDERDK---KEHPSRRRSHFFSSFFLTKL-AEGGKYRYAGVRRWT 204
L+CL P TWLNDEVVNMYM LL RDK K +PSRR+SHFF+SFFLTKL KY Y GV+RWT
Sbjct: 380 LKCLRPYTWLNDEVVNMYMQLLSCRDKELCKANPSRRQSHFFTSFFLTKLKGMDCKYNYTGVKRWT 445
BLAST of mRNA_H-elongata_contig57903.13264.1 vs. uniprot
Match: K3WMB9_GLOUD (ULP_PROTEASE domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WMB9_GLOUD) HSP 1 Score: 83.2 bits (204), Expect = 4.310e-17 Identity = 41/65 (63.08%), Postives = 49/65 (75.38%), Query Frame = 1
Query: 19 LQCLHPLTWLNDEVVNMYMLLLDERDK---KEHPSRRRSHFFSSFFLTKLAEGGKYRYAGVRRWT 204
LQCLHPL WLNDEV+N YM LL ERD+ K+ +RSHFF+SFF TK++EGG Y + VRRWT
Sbjct: 266 LQCLHPLQWLNDEVINFYMQLLMERDERLVKDGTLEKRSHFFNSFFYTKVSEGG-YNFVNVRRWT 329
BLAST of mRNA_H-elongata_contig57903.13264.1 vs. uniprot
Match: A0A1S4ASZ6_TOBAC (ubiquitin-like-specific protease ESD4 isoform X2 n=1 Tax=Nicotiana tabacum TaxID=4097 RepID=A0A1S4ASZ6_TOBAC) HSP 1 Score: 76.6 bits (187), Expect = 1.000e-15 Identity = 36/68 (52.94%), Postives = 46/68 (67.65%), Query Frame = 1
Query: 4 VCAELLQCLHPLTWLNDEVVNMYMLLLDERDKKEHPSRRRSHFFSSFFLTKLAEG-GKYRYAGVRRWT 204
+ E+LQCL P WLNDEV+N+Y+ LL ER+K+E R HFF++FF KL G G Y Y V+RWT
Sbjct: 112 ITGEILQCLRPRAWLNDEVINVYLELLKEREKREPKRFLRCHFFNTFFYKKLISGKGGYNYQSVKRWT 179
BLAST of mRNA_H-elongata_contig57903.13264.1 vs. uniprot
Match: UPI00053AD05C (putative ubiquitin-like-specific protease 1B isoform X1 n=4 Tax=Camelina sativa TaxID=90675 RepID=UPI00053AD05C) HSP 1 Score: 78.2 bits (191), Expect = 2.040e-15 Identity = 34/67 (50.75%), Postives = 44/67 (65.67%), Query Frame = 1
Query: 4 VCAELLQCLHPLTWLNDEVVNMYMLLLDERDKKEHPSRRRSHFFSSFFLTKLAEGGKYRYAGVRRWT 204
+C E LQCL P WLNDEV+N+Y+ LL ER+ ++ + HFF++FF KL G Y Y VRRWT
Sbjct: 177 ICGETLQCLMPTRWLNDEVINLYLELLKEREARDPQKYFKCHFFNTFFYIKLVSGSCYNYQAVRRWT 243
BLAST of mRNA_H-elongata_contig57903.13264.1 vs. uniprot
Match: A0A1S4AT45_TOBAC (ubiquitin-like-specific protease ESD4 isoform X1 n=1 Tax=Nicotiana tabacum TaxID=4097 RepID=A0A1S4AT45_TOBAC) HSP 1 Score: 76.6 bits (187), Expect = 2.890e-15 Identity = 36/68 (52.94%), Postives = 46/68 (67.65%), Query Frame = 1
Query: 4 VCAELLQCLHPLTWLNDEVVNMYMLLLDERDKKEHPSRRRSHFFSSFFLTKLAEG-GKYRYAGVRRWT 204
+ E+LQCL P WLNDEV+N+Y+ LL ER+K+E R HFF++FF KL G G Y Y V+RWT
Sbjct: 112 ITGEILQCLRPRAWLNDEVINVYLELLKEREKREPKRFLRCHFFNTFFYKKLISGKGGYNYQSVKRWT 179
BLAST of mRNA_H-elongata_contig57903.13264.1 vs. uniprot
Match: A9TDR5_PHYPA (Predicted protein (Fragment) n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9TDR5_PHYPA) HSP 1 Score: 75.5 bits (184), Expect = 3.370e-15 Identity = 35/67 (52.24%), Postives = 45/67 (67.16%), Query Frame = 1
Query: 4 VCAELLQCLHPLTWLNDEVVNMYMLLLDERDKKEHPSRRRSHFFSSFFLTKLAEGGKYRYAGVRRWT 204
V E+LQCL P +WLNDEV+N+YM LL ER+ +E + HFF+SFF K+ + Y Y VRRWT
Sbjct: 15 VTGEILQCLLPGSWLNDEVINVYMELLKERESREPEKFLKCHFFNSFFYNKVQDAQSYDYQAVRRWT 81
BLAST of mRNA_H-elongata_contig57903.13264.1 vs. uniprot
Match: UPI000B78DA3B (ubiquitin-like-specific protease ESD4 n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=UPI000B78DA3B) HSP 1 Score: 77.8 bits (190), Expect = 3.630e-15 Identity = 37/68 (54.41%), Postives = 47/68 (69.12%), Query Frame = 1
Query: 4 VCAELLQCLHPLTWLNDEVVNMYMLLLDERDKKEHPSRRRSHFFSSFFLTKLAEGGK-YRYAGVRRWT 204
+ E+LQCL P WLNDEV+N+Y+ LL ER+K+E + HFFS+FF KL GG+ Y Y VRRWT
Sbjct: 304 ITGEILQCLGPGAWLNDEVINLYLELLKEREKREPQKFLKCHFFSTFFYKKLTSGGEFYDYRAVRRWT 371
BLAST of mRNA_H-elongata_contig57903.13264.1 vs. uniprot
Match: A0A8K0HRI5_9ROSA (Uncharacterized protein n=1 Tax=Rhamnella rubrinervis TaxID=2594499 RepID=A0A8K0HRI5_9ROSA) HSP 1 Score: 77.4 bits (189), Expect = 4.980e-15 Identity = 34/67 (50.75%), Postives = 45/67 (67.16%), Query Frame = 1
Query: 4 VCAELLQCLHPLTWLNDEVVNMYMLLLDERDKKEHPSRRRSHFFSSFFLTKLAEGGKYRYAGVRRWT 204
+ E+LQCL P WLNDEV+N+Y+ LL ER+K++ + HFF++FF KL G Y Y VRRWT
Sbjct: 309 ITGEVLQCLRPGAWLNDEVINLYLELLKEREKRDPQKFLKCHFFNTFFYKKLISGSGYEYKSVRRWT 375
BLAST of mRNA_H-elongata_contig57903.13264.1 vs. uniprot
Match: A0A6P6WS48_COFAR (ubiquitin-like-specific protease ESD4 n=1 Tax=Coffea arabica TaxID=13443 RepID=A0A6P6WS48_COFAR) HSP 1 Score: 76.3 bits (186), Expect = 6.390e-15 Identity = 35/69 (50.72%), Postives = 46/69 (66.67%), Query Frame = 1
Query: 1 TVCAELLQCLHPLTWLNDEVVNMYMLLLDERDKKEHPSRRRSHFFSSFFLTKLAEG-GKYRYAGVRRWT 204
++ E+LQCL P WLNDEV+N+Y+ LL ER+++E HFF++FF KL G G Y Y VRRWT
Sbjct: 104 SITGEVLQCLRPRAWLNDEVINLYLELLKERERREPKKFLNCHFFNTFFFKKLVSGKGGYNYQSVRRWT 172
BLAST of mRNA_H-elongata_contig57903.13264.1 vs. uniprot
Match: A0A6P4AVM9_ZIZJJ (ubiquitin-like-specific protease ESD4 n=4 Tax=Ziziphus jujuba TaxID=326968 RepID=A0A6P4AVM9_ZIZJJ) HSP 1 Score: 76.6 bits (187), Expect = 9.300e-15 Identity = 34/67 (50.75%), Postives = 45/67 (67.16%), Query Frame = 1
Query: 4 VCAELLQCLHPLTWLNDEVVNMYMLLLDERDKKEHPSRRRSHFFSSFFLTKLAEGGKYRYAGVRRWT 204
+ E+LQCL P WLNDEV+N+Y+ LL ER+K++ + HFF++FF KL G Y Y VRRWT
Sbjct: 307 ITGEVLQCLRPGAWLNDEVINLYLELLKEREKRDPQKFLKCHFFNTFFYKKLISGNGYDYKSVRRWT 373 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57903.13264.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig57903.13264.1 >prot_H-elongata_contig57903.13264.1 ID=prot_H-elongata_contig57903.13264.1|Name=mRNA_H-elongata_contig57903.13264.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=68bp TVCAELLQCLHPLTWLNDEVVNMYMLLLDERDKKEHPSRRRSHFFSSFFLback to top mRNA from alignment at H-elongata_contig57903:2523..3516+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig57903.13264.1 ID=mRNA_H-elongata_contig57903.13264.1|Name=mRNA_H-elongata_contig57903.13264.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=994bp|location=Sequence derived from alignment at H-elongata_contig57903:2523..3516+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig57903:2523..3516+ >mRNA_H-elongata_contig57903.13264.1 ID=mRNA_H-elongata_contig57903.13264.1|Name=mRNA_H-elongata_contig57903.13264.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at H-elongata_contig57903:2523..3516+ (Himanthalia elongata Himel1 dioecious)back to top |