mRNA_H-elongata_contig57742.13244.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57742.13244.1
Unique NamemRNA_H-elongata_contig57742.13244.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig57742.13244.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 84.0 bits (206), Expect = 1.240e-16
Identity = 42/98 (42.86%), Postives = 63/98 (64.29%), Query Frame = 1
Query:   22 EWWKAEETEMHGMVKNCLYKQVARPKDNLVVGTKILYKRKVGQDGKVEKYKCRLVAKGFWQVENVQYAEKYSPTPATASIRMLLVTAVVKDGELRHFN 315
            EW KA E E+    +  ++++V RP+D  ++G+K ++K K G DG+VEKYK RLVA+GF QVE + Y E ++P   + SIR+LL  A   D E+   +
Sbjct: 1009 EWRKACEAELEMFKQLGVFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMD 1106          
BLAST of mRNA_H-elongata_contig57742.13244.1 vs. uniprot
Match: UPI0015A81C6A (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015A81C6A)

HSP 1 Score: 78.2 bits (191), Expect = 4.280e-16
Identity = 42/103 (40.78%), Postives = 63/103 (61.17%), Query Frame = 1
Query:    7 SPEWGEWWKAEETEMHGMVKNCLYKQVARPKDNLVVGTKILYKRKVGQDGKVEKYKCRLVAKGFWQVENVQYAEKYSPTPATASIRMLLVTAVVKDGELRHFN 315
            SP+  +W  A E E+  + +N  +  V RP+   VV  K ++KRK+ +DG+VE+YK RLVA+G+ QVE + Y E +SP   T SIR LL  +V +D ++    
Sbjct:   40 SPDAEKWKLAMEEELENLKRNETWDIVPRPEGRKVVKCKWVFKRKLNKDGQVERYKARLVARGYTQVEGIDYKETFSPVIKTKSIRTLLAFSVEQDWQVHQLG 142          
BLAST of mRNA_H-elongata_contig57742.13244.1 vs. uniprot
Match: A0A1C7MSU6_GRIFR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Grifola frondosa TaxID=5627 RepID=A0A1C7MSU6_GRIFR)

HSP 1 Score: 80.5 bits (197), Expect = 1.980e-15
Identity = 46/105 (43.81%), Postives = 61/105 (58.10%), Query Frame = 1
Query:    1 MESPEWGEWWKAEETEMHGMVKNCLYKQVARPKDNLVVGTKILYKRKVGQDGKVEKYKCRLVAKGFWQVENVQYAEKYSPTPATASIRMLLVTAVVKDGELRHFN 315
            M  P+   W  A   E+   VK  LY +V RP+D  VVG K +++ K G DG++EKYK R+VAKGF QVE V Y + ++P    ASIR LL  A   D E+   +
Sbjct:  289 MSRPDAERWKAACAEELLTFVKAELYDEVERPRDRKVVGCKWVFRIKRGPDGEIEKYKARVVAKGFTQVEGVDYTDTFAPVTKFASIRALLALAAKLDLEIHQMD 393          
BLAST of mRNA_H-elongata_contig57742.13244.1 vs. uniprot
Match: A0A5N6MV24_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6MV24_9ASTR)

HSP 1 Score: 79.3 bits (194), Expect = 5.090e-15
Identity = 43/94 (45.74%), Postives = 56/94 (59.57%), Query Frame = 1
Query:   22 EWWKAEETEMHGMVKNCLYKQVARPKDNLVVGTKILYKRKVGQDGKVEKYKCRLVAKGFWQVENVQYAEKYSPTPATASIRMLLVTAVVKDGEL 303
            EWW+A E EM  M +N  ++ V +P D  VV  K +YK K   DG VE++K RLVA+GF Q   V Y E +SP     ++R+LL  AV K  EL
Sbjct:  475 EWWQAMEEEMTAMYRNKTWELVPKPTDAKVVSCKWVYKLKQKPDGSVERFKARLVARGFSQEYGVNYEETFSPVAKLTTVRVLLAVAVSKQWEL 568          
BLAST of mRNA_H-elongata_contig57742.13244.1 vs. uniprot
Match: A0A3S3PPW2_9ACAR (Gag-pol polyprotein-like protein (Fragment) n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S3PPW2_9ACAR)

HSP 1 Score: 78.2 bits (191), Expect = 1.290e-14
Identity = 42/103 (40.78%), Postives = 59/103 (57.28%), Query Frame = 1
Query:    7 SPEWGEWWKAEETEMHGMVKNCLYKQVARPKDNLVVGTKILYKRKVGQDGKVEKYKCRLVAKGFWQVENVQYAEKYSPTPATASIRMLLVTAVVKDGELRHFN 315
            SPE  +W +A E E+  +  N  +  V RPKD  V+  K ++KRK+  DG +E+YK RLV KGF Q   V Y E +SP     S+R++L  AV     + HF+
Sbjct:  358 SPEANKWKEAIEEELKSLKANNTWIDVTRPKDRKVISNKWVFKRKIKPDGSIERYKARLVVKGFNQQLGVDYTETFSPVVRFTSVRVILSLAVSMKMNIVHFD 460          
BLAST of mRNA_H-elongata_contig57742.13244.1 vs. uniprot
Match: UPI0015ADBDF9 (uncharacterized protein LOC118188897 n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015ADBDF9)

HSP 1 Score: 73.2 bits (178), Expect = 1.470e-13
Identity = 38/90 (42.22%), Postives = 57/90 (63.33%), Query Frame = 1
Query:   40 ETEMHGMVKNCLYKQVARPKDNLVVGTKILYKRKVGQDGKVEKYKCRLVAKGFWQVENVQYAEKYSPTPATASIRMLLVTAVVKDGELRH 309
            E E+  + +N  +  V RP+   VV  K ++KRK+ +DG+VE+YK RLVA+G+ QVE + Y E +SP   T SIR LL  +V +D ++  
Sbjct:    2 EKELENLKRNETWDIVPRPEGRKVVKCKWVFKRKLNKDGQVERYKARLVARGYTQVEGIDYKETFSPVIKTKSIRTLLAFSVEQDCQVHQ 91          
BLAST of mRNA_H-elongata_contig57742.13244.1 vs. uniprot
Match: A0A2G2V8S1_CAPBA (Uncharacterized protein n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2V8S1_CAPBA)

HSP 1 Score: 74.7 bits (182), Expect = 2.130e-13
Identity = 37/97 (38.14%), Postives = 60/97 (61.86%), Query Frame = 1
Query:   25 WWKAEETEMHGMVKNCLYKQVARPKDNLVVGTKILYKRKVGQDGKVEKYKCRLVAKGFWQVENVQYAEKYSPTPATASIRMLLVTAVVKDGELRHFN 315
            W +A ++E+  ++ N +++ V  P +N  +G+K ++KRK+  DG ++KYK RLV KGF Q E + Y + YSP     SIRML+  A V D ++   +
Sbjct:  584 WKEAVDSEIDSILSNHMWELVDLPPENKPLGSKWIFKRKMKTDGTIDKYKARLVVKGFNQKEGLDYFDTYSPVTRITSIRMLIALAAVYDLQIHQMD 680          
BLAST of mRNA_H-elongata_contig57742.13244.1 vs. uniprot
Match: A0A2R6NZJ8_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6NZJ8_9APHY)

HSP 1 Score: 74.7 bits (182), Expect = 2.160e-13
Identity = 43/105 (40.95%), Postives = 59/105 (56.19%), Query Frame = 1
Query:    1 MESPEWGEWWKAEETEMHGMVKNCLYKQVARPKDNLVVGTKILYKRKVGQDGKVEKYKCRLVAKGFWQVENVQYAEKYSPTPATASIRMLLVTAVVKDGELRHFN 315
            M  P+  +W  AE  E+   VK  L+ +V +PK   +V  K +Y  K G DG+V KYK RLVA+GF Q+E V Y E ++P     SIR LL  A V + E+   +
Sbjct:  976 MARPDASQWKLAEIAEIEAFVKAKLFTEVNKPKGRRLVDCKWVYTIKRGPDGEVIKYKARLVARGFTQIEGVDYNETFAPVSKFTSIRSLLALAAVHNLEIHQMD 1080          
BLAST of mRNA_H-elongata_contig57742.13244.1 vs. uniprot
Match: A0A4Y9YQU6_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fomitopsis rosea TaxID=34475 RepID=A0A4Y9YQU6_9APHY)

HSP 1 Score: 74.3 bits (181), Expect = 2.870e-13
Identity = 39/99 (39.39%), Postives = 60/99 (60.61%), Query Frame = 1
Query:   19 GEWWKAEETEMHGMVKNCLYKQVARPKDNLVVGTKILYKRKVGQDGKVEKYKCRLVAKGFWQVENVQYAEKYSPTPATASIRMLLVTAVVKDGELRHFN 315
            G+W KA + E+  +V+N  ++ V  P     +G++ +++ K   DG +E+YK RLVAKGF Q     Y E ++PTP  ASIR +LV A ++D EL   +
Sbjct:  298 GKWLKAAQDEVQSLVQNGTFELVQLPPGRKAIGSQWVFRVKRNADGSIERYKGRLVAKGFSQRPGFDYNETFAPTPKWASIRAILVLAALEDLELESVD 396          
BLAST of mRNA_H-elongata_contig57742.13244.1 vs. uniprot
Match: A0A4S4KBB0_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A4S4KBB0_9APHY)

HSP 1 Score: 73.9 bits (180), Expect = 3.510e-13
Identity = 43/105 (40.95%), Postives = 59/105 (56.19%), Query Frame = 1
Query:    1 MESPEWGEWWKAEETEMHGMVKNCLYKQVARPKDNLVVGTKILYKRKVGQDGKVEKYKCRLVAKGFWQVENVQYAEKYSPTPATASIRMLLVTAVVKDGELRHFN 315
            M  P+  +W  AE  E+   VK  L+ +V +PK   +V  K +Y  K G DG+V KYK RLVA+GF Q+E V Y E ++P     SIR LL  A V + E+   +
Sbjct:  152 MARPDAPQWKLAEIAEIEAFVKAKLFTEVNKPKGRRLVDCKWVYTIKRGPDGEVIKYKARLVARGFTQIEGVDYNETFAPVSKFTSIRSLLALAAVHNLEIHQMD 256          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57742.13244.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0C2WN23_AMAMK1.240e-1642.86Integrase catalytic domain-containing protein (Fra... [more]
UPI0015A81C6A4.280e-1640.78uncharacterized mitochondrial protein AtMg00820-li... [more]
A0A1C7MSU6_GRIFR1.980e-1543.81Retrovirus-related Pol polyprotein from transposon... [more]
A0A5N6MV24_9ASTR5.090e-1545.74Integrase catalytic domain-containing protein n=1 ... [more]
A0A3S3PPW2_9ACAR1.290e-1440.78Gag-pol polyprotein-like protein (Fragment) n=1 Ta... [more]
UPI0015ADBDF91.470e-1342.22uncharacterized protein LOC118188897 n=1 Tax=Stego... [more]
A0A2G2V8S1_CAPBA2.130e-1338.14Uncharacterized protein n=1 Tax=Capsicum baccatum ... [more]
A0A2R6NZJ8_9APHY2.160e-1340.95Integrase catalytic domain-containing protein n=1 ... [more]
A0A4Y9YQU6_9APHY2.870e-1339.39Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4S4KBB0_9APHY3.510e-1340.95Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57742contigH-elongata_contig57742:1222..1542 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score73.9
Seed ortholog evalue5e-11
Seed eggNOG ortholog28532.XP_010532348.1
Preferred nameUSP
KEGG rclassRC00002
KEGG koko:K12447
KEGG ReactionR00289,R00502,R01381,R03077,R08845
KEGG Pathwayko00040,ko00052,ko00053,ko00520,ko01100,ko01130,map00040,map00052,map00053,map00520,map01100,map01130
KEGG ModuleM00014
GOsGO:0003674,GO:0003824,GO:0003983,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006011,GO:0006082,GO:0006139,GO:0006725,GO:0006793,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009225,GO:0009226,GO:0009555,GO:0009987,GO:0010035,GO:0010038,GO:0010491,GO:0016740,GO:0016772,GO:0016779,GO:0017103,GO:0018130,GO:0019438,GO:0019752,GO:0032501,GO:0032502,GO:0033356,GO:0034641,GO:0034654,GO:0042221,GO:0042995,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046398,GO:0046483,GO:0046686,GO:0047338,GO:0047350,GO:0048229,GO:0048856,GO:0050896,GO:0051748,GO:0052573,GO:0055086,GO:0070569,GO:0071704,GO:0090406,GO:0120025,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901576
EggNOG free text desc.udp-sugar
EggNOG OGs37MVU@33090,3GGIU@35493,3HSQP@3699,COG2801@1,COG4284@1,KOG0017@2759,KOG2388@2759
EC2.7.7.64
COG Functional cat.M
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size321
Cds size321
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930937.4730446-CDS-H-elongata_contig57742:1221..15421622930937.4730446-CDS-H-elongata_contig57742:1221..1542Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57742 1222..1542 -
1691679632.177057-CDS-H-elongata_contig57742:1221..15421691679632.177057-CDS-H-elongata_contig57742:1221..1542Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57742 1222..1542 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57742.13244.1prot_H-elongata_contig57742.13244.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57742 1222..1542 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57742.13244.1

>prot_H-elongata_contig57742.13244.1 ID=prot_H-elongata_contig57742.13244.1|Name=mRNA_H-elongata_contig57742.13244.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
MESPEWGEWWKAEETEMHGMVKNCLYKQVARPKDNLVVGTKILYKRKVGQ
DGKVEKYKCRLVAKGFWQVENVQYAEKYSPTPATASIRMLLVTAVVKDGE
LRHFNA*
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mRNA from alignment at H-elongata_contig57742:1222..1542-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57742.13244.1 ID=mRNA_H-elongata_contig57742.13244.1|Name=mRNA_H-elongata_contig57742.13244.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=321bp|location=Sequence derived from alignment at H-elongata_contig57742:1222..1542- (Himanthalia elongata Himel1 dioecious)
ATGGAATCGCCGGAATGGGGCGAATGGTGGAAGGCAGAGGAAACAGAAAT GCATGGCATGGTTAAGAACTGCCTTTACAAGCAGGTGGCTCGGCCTAAGG ATAACCTCGTGGTTGGCACAAAAATTCTCTACAAGCGAAAGGTCGGACAG GATGGCAAGGTCGAAAAGTACAAGTGTCGACTTGTCGCTAAAGGGTTCTG GCAGGTGGAAAATGTGCAATACGCGGAAAAGTACTCGCCAACGCCAGCGA CCGCGTCAATCCGGATGCTTTTGGTGACGGCAGTGGTCAAGGACGGAGAG CTGCGCCATTTCAACGCGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig57742:1222..1542-

>mRNA_H-elongata_contig57742.13244.1 ID=mRNA_H-elongata_contig57742.13244.1|Name=mRNA_H-elongata_contig57742.13244.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig57742:1222..1542- (Himanthalia elongata Himel1 dioecious)
ATGGAATCGCCGGAATGGGGCGAATGGTGGAAGGCAGAGGAAACAGAAAT
GCATGGCATGGTTAAGAACTGCCTTTACAAGCAGGTGGCTCGGCCTAAGG
ATAACCTCGTGGTTGGCACAAAAATTCTCTACAAGCGAAAGGTCGGACAG
GATGGCAAGGTCGAAAAGTACAAGTGTCGACTTGTCGCTAAAGGGTTCTG
GCAGGTGGAAAATGTGCAATACGCGGAAAAGTACTCGCCAACGCCAGCGA
CCGCGTCAATCCGGATGCTTTTGGTGACGGCAGTGGTCAAGGACGGAGAG
CTGCGCCATTTCAACGCGTAGATGGAATCGCCGGAATGGGGCGAATGGTG
GAAGGCAGAGGAAACAGAAATGCATGGCATGGTTAAGAACTGCCTTTACA
AGCAGGTGGCTCGGCCTAAGGATAACCTCGTGGTTGGCACAAAAATTCTC
TACAAGCGAAAGGTCGGACAGGATGGCAAGGTCGAAAAGTACAAGTGTCG
ACTTGTCGCTAAAGGGTTCTGGCAGGTGGAAAATGTGCAATACGCGGAAA
AGTACTCGCCAACGCCAGCGACCGCGTCAATCCGGATGCTTTTGGTGACG
GCAGTGGTCAAGGACGGAGAGCTGCGCCATTTCAACGCGTAG
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