mRNA_H-elongata_contig57730.13240.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig57730.13240.1 vs. uniprot
Match: D7FVB9_ECTSI (BTB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVB9_ECTSI) HSP 1 Score: 376 bits (965), Expect = 5.540e-120 Identity = 182/235 (77.45%), Postives = 203/235 (86.38%), Query Frame = 1
Query: 4 VGFADSHCRPQRVHLLCGKGVIKMAAGLEHSLALTESGDLYSFGDNLSGQLGLGHNLTAKEQTPQRVPSLSKAKVTQMACGQDHTAVITSSGKLFTFGNNRFGALGLSGHAEDGPPIVASNPQLVTTLSGKCVVQIGCGLQHTVALTRTGQVYTWGHNSRGQLGTGDTKDRFTPSQVCKPLSAAKCIHVACGGQHTLALTEHDDVFGFGSDRHGQLGLGXXXXXQGGYIFPVPSR 708
+G DSH PQRVHLL GKGV+KMAAGLEHSLALTESGDLY+FGDNLSGQLGLGHN TAKEQTPQ+VP L +AK+TQ+ACGQDHTAV+TSSG+LF FGNNR GALG++GHA +GPPIVAS PQLVT L GK VVQIGCGLQHTVALT G VY WG N RGQLGTGDT++R+TPS VCKPLSA KCIHVACGGQHT+A+T+ DDV+GFGSDRHGQLGLG + G I PVP+R
Sbjct: 78 IGNTDSHSNPQRVHLLSGKGVVKMAAGLEHSLALTESGDLYAFGDNLSGQLGLGHNFTAKEQTPQKVPPLGRAKITQLACGQDHTAVLTSSGELFMFGNNRDGALGVAGHANEGPPIVASAPQLVTGLKGKHVVQIGCGLQHTVALTAAGGVYCWGENGRGQLGTGDTQNRYTPSLVCKPLSAFKCIHVACGGQHTIAVTDCDDVYGFGSDRHGQLGLG-----RRGVIVPVPTR 307
BLAST of mRNA_H-elongata_contig57730.13240.1 vs. uniprot
Match: A0A0K9RGF0_SPIOL (Uncharacterized protein n=1 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9RGF0_SPIOL) HSP 1 Score: 157 bits (398), Expect = 2.830e-43 Identity = 89/219 (40.64%), Postives = 128/219 (58.45%), Query Frame = 1
Query: 4 VGFADSHCRPQRVHLLCGKGVIKMAAGLEHSLALTESGDLYSFGDNLSGQLGLGHNLTAKEQTPQRVPSLSKAKVTQMACGQDHTAVITSSGKLFTFGNNRFGALGLSGHAEDGPPIVASNPQLVTTLSGKCVVQIGCGLQHTVALTRTGQVYTWGHNSRGQLGTGDTKDRFTPSQVCKPLSAAKCIHVACGGQHTLALTEHDDVFGFGSDRHGQLGLG 660
+G A+ PQR+ G V +AAG EHS A+TE+GD+Y +G G LGLG P++ S+ K+ +ACG HT +TSSG ++T+G +++G LG G ED P + LSG+ + QI G +HT+A+T G++Y WG N GQ+G GD DR +P QV P + K + + CG +HTLA+TE ++VF +G +GQLG G
Sbjct: 25 IGTAEDSLVPQRIKAFQGTPVKMVAAGAEHSAAVTEAGDVYGWGWGRYGNLGLGDR--KDRLVPEKSSSIDGIKMVHVACGWRHTITVTSSGSIYTYGWSKYGQLG-HGDFED-----HLTPCKLEALSGQIISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNDDRCSPVQVLFP-NDQKVVQICCGWRHTLAVTERNNVFSWGRGTNGQLGHG 234
BLAST of mRNA_H-elongata_contig57730.13240.1 vs. uniprot
Match: A0A4S8IQ45_MUSBA (Uncharacterized protein n=3 Tax=Musa TaxID=4640 RepID=A0A4S8IQ45_MUSBA) HSP 1 Score: 155 bits (393), Expect = 4.850e-41 Identity = 94/239 (39.33%), Postives = 128/239 (53.56%), Query Frame = 1
Query: 4 VGFADSHCRPQRVHLLCGKGVIKMAAGLEHSLALTESGDLYSFGDNLSGQLGLGHNLTAKEQTPQRVPSLSKAKVTQMACGQDHTAVITSSGKLFTFGNNRFGALGLSGHAEDGPPIVASNPQLVTTLSGKCVVQIGCGLQHTVALTRTGQVYTWGHNSRGQLGTGDTKDRFTPSQVCKPLSAAKCIHVACGGQHTLALTEHDDVFGFGSDRHGQLGLGXXXXXQGGYIFPVPSRCDAG 720
+G D PQ++ G V +AAG EH+ A+TE GDLY +G G LGLG TP++V S+ + +ACG HT ++SSG L+T+G +++G LG G ED +P L+ L C+ QI G +HT+ALT G++Y WG N GQLG GD D +P QV P K ++CG +HTLALTE +VF +G GQLG G + V S+ G
Sbjct: 198 LGTTDDSLVPQKIQAFQGICVKMIAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRNDCL--TPEKVTSIKGENMVLVACGWRHTIAVSSSGNLYTYGWSKYGQLG-HGDFED-----HLSPHLLEALKDSCISQISGGWRHTMALTSDGRLYGWGWNKFGQLGVGDNDDHCSPVQVKLP-EEQKVKQISCGWRHTLALTERGNVFSWGRGTSGQLGHGDILDRNTPKMIEVISKDGLG 427
BLAST of mRNA_H-elongata_contig57730.13240.1 vs. uniprot
Match: A0A5C1IXZ3_9CARY (UV resistance locus 8 n=1 Tax=Colobanthus quitensis TaxID=552857 RepID=A0A5C1IXZ3_9CARY) HSP 1 Score: 154 bits (388), Expect = 1.080e-40 Identity = 87/210 (41.43%), Postives = 124/210 (59.05%), Query Frame = 1
Query: 31 PQRVHLLCGKGVIKMAAGLEHSLALTESGDLYSFGDNLSGQLGLGHNLTAKEQTPQRVPSLSKAKVTQMACGQDHTAVITSSGKLFTFGNNRFGALGLSGHAEDGPPIVASNPQLVTTLSGKCVVQIGCGLQHTVALTRTGQVYTWGHNSRGQLGTGDTKDRFTPSQVCKPLSAAKCIHVACGGQHTLALTEHDDVFGFGSDRHGQLGLG 660
PQ++ G V +AAG EHS A+TE+GD+Y +G G LGLG + P++V + K+T +ACG HT +T SG ++T+G +++G LG G ED P P + LS K + QI G +HT+A+T G++Y WG N GQ+G GD DR +P QV P K + + CG +HTLA+TE ++VF +G +GQLG G
Sbjct: 160 PQKIQTFQGVPVKMVAAGAEHSAAVTEAGDVYGWGWGRYGNLGLGDR--SDRLVPEKVSPIDGIKMTLVACGWRHTITVTDSGSIYTYGWSKYGQLG-HGDFEDHP-----TPYKLEALSDKPISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDRCSPVQVVFPHDQ-KVVQICCGWRHTLAVTEKNNVFSWGRGTNGQLGHG 360
BLAST of mRNA_H-elongata_contig57730.13240.1 vs. uniprot
Match: A0A2K3MVP3_TRIPR (Putative E3 ubiquitin-protein ligase HERC1-like protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MVP3_TRIPR) HSP 1 Score: 153 bits (386), Expect = 1.220e-40 Identity = 87/219 (39.73%), Postives = 131/219 (59.82%), Query Frame = 1
Query: 4 VGFADSHCRPQRVHLLCGKGVIKMAAGLEHSLALTESGDLYSFGDNLSGQLGLGHNLTAKEQTPQRVPSLSKAKVTQMACGQDHTAVITSSGKLFTFGNNRFGALGLSGHAEDGPPIVASNPQLVTTLSGKCVVQIGCGLQHTVALTRTGQVYTWGHNSRGQLGTGDTKDRFTPSQVCKPLSAAKCIHVACGGQHTLALTEHDDVFGFGSDRHGQLGLG 660
+G + PQ++ G + +AAG EHS+A+TE+G+LY +G G LGLG P++V S+ + K+ +ACG HT ++SSG+L+T+G +++G LG G ED +V P + LS K + Q+ G +HT+ALT G +Y WG N GQ+G GD DR P QV P K + ++CG +HT+A+TE D+V+ +G +GQLG+G
Sbjct: 123 LGTVEDSLVPQKIQTFQGIPIKMVAAGAEHSVAITENGELYGWGWGRYGNLGLGDR--NDRCIPEKVSSVDRDKMVLVACGWRHTISVSSSGELYTYGWSKYGQLG-HGDCED--HLV---PHKLQALSDKLICQVSGGWRHTMALTTGGLLYGWGWNKFGQVGVGDNVDRCAPVQVKFPHDQ-KVVQISCGWRHTIAVTEKDNVYSWGRGTNGQLGIG 332
BLAST of mRNA_H-elongata_contig57730.13240.1 vs. uniprot
Match: A0A2Z6LRX8_TRISU (Uncharacterized protein n=6 Tax=IRL clade TaxID=2233839 RepID=A0A2Z6LRX8_TRISU) HSP 1 Score: 152 bits (384), Expect = 3.770e-40 Identity = 87/219 (39.73%), Postives = 130/219 (59.36%), Query Frame = 1
Query: 4 VGFADSHCRPQRVHLLCGKGVIKMAAGLEHSLALTESGDLYSFGDNLSGQLGLGHNLTAKEQTPQRVPSLSKAKVTQMACGQDHTAVITSSGKLFTFGNNRFGALGLSGHAEDGPPIVASNPQLVTTLSGKCVVQIGCGLQHTVALTRTGQVYTWGHNSRGQLGTGDTKDRFTPSQVCKPLSAAKCIHVACGGQHTLALTEHDDVFGFGSDRHGQLGLG 660
+G + PQ++ G + +AAG EHS+A+TE+G+LY +G G LGLG P++V S+ K+ +ACG HT ++SSG+L+T+G +++G LG G ED +V P + LS K + Q+ G +HT+ALT G +Y WG N GQ+G GD DR P QV P K + ++CG +HT+A+TE D+V+ +G +GQLG+G
Sbjct: 147 LGTTEDSLVPQKIQTFQGIPIKMVAAGAEHSVAITENGELYGWGWGRYGNLGLGDR--NDRCIPEKVSSVDTDKMVLVACGWRHTISVSSSGELYTYGWSKYGQLG-HGDCED--HLV---PHKLQALSDKLICQVAGGWRHTMALTTDGLLYGWGWNKFGQVGVGDNVDRCAPVQVKFPHDQ-KVVQISCGWRHTIAVTEKDNVYSWGRGTNGQLGIG 356
BLAST of mRNA_H-elongata_contig57730.13240.1 vs. uniprot
Match: A0A0D3BFB2_BRAOL (Uncharacterized protein n=14 Tax=Brassiceae TaxID=981071 RepID=A0A0D3BFB2_BRAOL) HSP 1 Score: 152 bits (383), Expect = 5.780e-40 Identity = 89/219 (40.64%), Postives = 129/219 (58.90%), Query Frame = 1
Query: 4 VGFADSHCRPQRVHLLCGKGVIKMAAGLEHSLALTESGDLYSFGDNLSGQLGLGHNLTAKEQTPQRVPSLSKAKVTQMACGQDHTAVITSSGKLFTFGNNRFGALGLSGHAEDGPPIVASNPQLVTTLSGKCVVQIGCGLQHTVALTRTGQVYTWGHNSRGQLGTGDTKDRFTPSQVCKPLSAAKCIHVACGGQHTLALTEHDDVFGFGSDRHGQLGLG 660
+G + PQ++ + G + +AAG EH+ A+TE GDLY +G G LGLG P+RV S S K++ +ACG HT ++ SG L+T+G +++G LG G ED +V P + LS + QI G +HT+ALT G++Y WG N GQ+G GD D+ +P QV P K + V+CG +HTLA+TE ++VF +G +GQLG+G
Sbjct: 155 LGDTEDSLVPQKIRVFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDR--NDRLVPERVTSASGEKMSMVACGWRHTIAVSYSGALYTYGWSKYGQLG-HGDLED--HLV---PHKLEALSNSVISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGDNLDQCSPLQVWFP-DDQKVVQVSCGWRHTLAVTEKNNVFAWGRGTNGQLGIG 364
BLAST of mRNA_H-elongata_contig57730.13240.1 vs. uniprot
Match: A0A0J8BD98_BETVV (Uncharacterized protein n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8BD98_BETVV) HSP 1 Score: 152 bits (384), Expect = 5.970e-40 Identity = 87/219 (39.73%), Postives = 127/219 (57.99%), Query Frame = 1
Query: 4 VGFADSHCRPQRVHLLCGKGVIKMAAGLEHSLALTESGDLYSFGDNLSGQLGLGHNLTAKEQTPQRVPSLSKAKVTQMACGQDHTAVITSSGKLFTFGNNRFGALGLSGHAEDGPPIVASNPQLVTTLSGKCVVQIGCGLQHTVALTRTGQVYTWGHNSRGQLGTGDTKDRFTPSQVCKPLSAAKCIHVACGGQHTLALTEHDDVFGFGSDRHGQLGLG 660
+G A+ PQ++ G V +AAG EHS A+TE+G++Y +G G LGLG P++ S+ K+ +ACG HT +TSSG ++T+G +++G LG G ED P + LSG+ + QI G +HT+A+T G++Y WG N GQ+G GD DR P QV P + K + + CG +HTLA+TE ++VF +G +GQLG G
Sbjct: 164 IGTAEDSLVPQKIQTFQGIPVKMVAAGAEHSAAVTEAGEVYGWGWGRYGNLGLGDR--KDRLIPEKALSIDGIKMVLVACGWRHTITVTSSGSIYTYGWSKYGQLG-HGDFED-----HLTPFKLEALSGQIISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNADRCFPVQVSFP-NDQKVVQICCGWRHTLAVTERNNVFSWGRGTNGQLGHG 373
BLAST of mRNA_H-elongata_contig57730.13240.1 vs. uniprot
Match: A0A2C9JZK3_BIOGL (Uncharacterized protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9JZK3_BIOGL) HSP 1 Score: 150 bits (380), Expect = 7.570e-40 Identity = 81/199 (40.70%), Postives = 119/199 (59.80%), Query Frame = 1
Query: 64 VIKMAAGLEHSLALTESGDLYSFGDNLSGQLGLGHNLTAKEQTPQRVPSLSKAKVTQMACGQDHTAVITSSGKLFTFGNNRFGALGLSGHAEDGPPIVASNPQLVTTLSGKCVVQIGCGLQHTVALTRTGQVYTWGHNSRGQLGTGDTKDRFTPSQVCKPLSAAKCIHVACGGQHTLALTEHDDVFGFGSDRHGQLGLG 660
VI++AAG HS+ LT++ ++ ++G N GQLG G + TP+ V SL+ V Q+ACG DHT V+T+ G + T+G+N +G LGL + I P +T L G + Q+ G H++ L+++G VY WG NS GQLG DT D + P+Q C+PL + + ++ CG HT LT VF +G+ +GQLG G
Sbjct: 96 VIQVAAGASHSVVLTQAHEVLTWGKNTEGQLGRGDVEESSRGTPKLVKSLAVCCVLQVACGYDHTIVLTNEGCVGTWGSNAYGQLGLGPNKSPWINI----PNFITCLKGLPIAQVAAGGNHSLILSKSGAVYGWGRNSFGQLGLNDTSDCYLPNQ-CRPLRSQRIKYICCGENHTACLTVDGRVFTYGAGTYGQLGHG 289
BLAST of mRNA_H-elongata_contig57730.13240.1 vs. uniprot
Match: A0A443PPR1_9MAGN (Regulator of chromosome condensation n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A443PPR1_9MAGN) HSP 1 Score: 151 bits (381), Expect = 1.170e-39 Identity = 86/219 (39.27%), Postives = 124/219 (56.62%), Query Frame = 1
Query: 4 VGFADSHCRPQRVHLLCGKGVIKMAAGLEHSLALTESGDLYSFGDNLSGQLGLGHNLTAKEQTPQRVPSLSKAKVTQMACGQDHTAVITSSGKLFTFGNNRFGALGLSGHAEDGPPIVASNPQLVTTLSGKCVVQIGCGLQHTVALTRTGQVYTWGHNSRGQLGTGDTKDRFTPSQVCKPLSAAKCIHVACGGQHTLALTEHDDVFGFGSDRHGQLGLG 660
+G D PQ + G V +AAG EH+ A+TE GDLY +G G LGLG + P++V ++ K+ +ACG HT ++SSG L+T+G +++G LG H + ++ P + L V QI G +HT+ALT G +Y WG N GQ+G GD+ DR +P QV P K + ++CG +HTLA+T+ D+VF +G GQLG G
Sbjct: 149 LGTTDDSLVPQNIQAFEGVSVKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDR--SDRLVPEKVSAVDGQKMVSVACGWRHTISVSSSGSLYTYGWSKYGQLG---HGDFEDHLI---PHQLEALRNNFVTQISGGWRHTMALTSDGSLYGWGWNKFGQIGIGDSDDRCSPVQVKFPPDQ-KVVQISCGWRHTLAVTDKDNVFSWGRGTSGQLGHG 358 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57730.13240.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig57730.13240.1 >prot_H-elongata_contig57730.13240.1 ID=prot_H-elongata_contig57730.13240.1|Name=mRNA_H-elongata_contig57730.13240.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=243bp MVGFADSHCRPQRVHLLCGKGVIKMAAGLEHSLALTESGDLYSFGDNLSGback to top mRNA from alignment at H-elongata_contig57730:479..3580- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig57730.13240.1 ID=mRNA_H-elongata_contig57730.13240.1|Name=mRNA_H-elongata_contig57730.13240.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3102bp|location=Sequence derived from alignment at H-elongata_contig57730:479..3580- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig57730:479..3580- >mRNA_H-elongata_contig57730.13240.1 ID=mRNA_H-elongata_contig57730.13240.1|Name=mRNA_H-elongata_contig57730.13240.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1458bp|location=Sequence derived from alignment at H-elongata_contig57730:479..3580- (Himanthalia elongata Himel1 dioecious)back to top |