mRNA_H-elongata_contig57730.13240.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57730.13240.1
Unique NamemRNA_H-elongata_contig57730.13240.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig57730.13240.1 vs. uniprot
Match: D7FVB9_ECTSI (BTB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVB9_ECTSI)

HSP 1 Score: 376 bits (965), Expect = 5.540e-120
Identity = 182/235 (77.45%), Postives = 203/235 (86.38%), Query Frame = 1
Query:    4 VGFADSHCRPQRVHLLCGKGVIKMAAGLEHSLALTESGDLYSFGDNLSGQLGLGHNLTAKEQTPQRVPSLSKAKVTQMACGQDHTAVITSSGKLFTFGNNRFGALGLSGHAEDGPPIVASNPQLVTTLSGKCVVQIGCGLQHTVALTRTGQVYTWGHNSRGQLGTGDTKDRFTPSQVCKPLSAAKCIHVACGGQHTLALTEHDDVFGFGSDRHGQLGLGXXXXXQGGYIFPVPSR 708
            +G  DSH  PQRVHLL GKGV+KMAAGLEHSLALTESGDLY+FGDNLSGQLGLGHN TAKEQTPQ+VP L +AK+TQ+ACGQDHTAV+TSSG+LF FGNNR GALG++GHA +GPPIVAS PQLVT L GK VVQIGCGLQHTVALT  G VY WG N RGQLGTGDT++R+TPS VCKPLSA KCIHVACGGQHT+A+T+ DDV+GFGSDRHGQLGLG     + G I PVP+R
Sbjct:   78 IGNTDSHSNPQRVHLLSGKGVVKMAAGLEHSLALTESGDLYAFGDNLSGQLGLGHNFTAKEQTPQKVPPLGRAKITQLACGQDHTAVLTSSGELFMFGNNRDGALGVAGHANEGPPIVASAPQLVTGLKGKHVVQIGCGLQHTVALTAAGGVYCWGENGRGQLGTGDTQNRYTPSLVCKPLSAFKCIHVACGGQHTIAVTDCDDVYGFGSDRHGQLGLG-----RRGVIVPVPTR 307          
BLAST of mRNA_H-elongata_contig57730.13240.1 vs. uniprot
Match: A0A0K9RGF0_SPIOL (Uncharacterized protein n=1 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9RGF0_SPIOL)

HSP 1 Score: 157 bits (398), Expect = 2.830e-43
Identity = 89/219 (40.64%), Postives = 128/219 (58.45%), Query Frame = 1
Query:    4 VGFADSHCRPQRVHLLCGKGVIKMAAGLEHSLALTESGDLYSFGDNLSGQLGLGHNLTAKEQTPQRVPSLSKAKVTQMACGQDHTAVITSSGKLFTFGNNRFGALGLSGHAEDGPPIVASNPQLVTTLSGKCVVQIGCGLQHTVALTRTGQVYTWGHNSRGQLGTGDTKDRFTPSQVCKPLSAAKCIHVACGGQHTLALTEHDDVFGFGSDRHGQLGLG 660
            +G A+    PQR+    G  V  +AAG EHS A+TE+GD+Y +G    G LGLG         P++  S+   K+  +ACG  HT  +TSSG ++T+G +++G LG  G  ED        P  +  LSG+ + QI  G +HT+A+T  G++Y WG N  GQ+G GD  DR +P QV  P +  K + + CG +HTLA+TE ++VF +G   +GQLG G
Sbjct:   25 IGTAEDSLVPQRIKAFQGTPVKMVAAGAEHSAAVTEAGDVYGWGWGRYGNLGLGDR--KDRLVPEKSSSIDGIKMVHVACGWRHTITVTSSGSIYTYGWSKYGQLG-HGDFED-----HLTPCKLEALSGQIISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNDDRCSPVQVLFP-NDQKVVQICCGWRHTLAVTERNNVFSWGRGTNGQLGHG 234          
BLAST of mRNA_H-elongata_contig57730.13240.1 vs. uniprot
Match: A0A4S8IQ45_MUSBA (Uncharacterized protein n=3 Tax=Musa TaxID=4640 RepID=A0A4S8IQ45_MUSBA)

HSP 1 Score: 155 bits (393), Expect = 4.850e-41
Identity = 94/239 (39.33%), Postives = 128/239 (53.56%), Query Frame = 1
Query:    4 VGFADSHCRPQRVHLLCGKGVIKMAAGLEHSLALTESGDLYSFGDNLSGQLGLGHNLTAKEQTPQRVPSLSKAKVTQMACGQDHTAVITSSGKLFTFGNNRFGALGLSGHAEDGPPIVASNPQLVTTLSGKCVVQIGCGLQHTVALTRTGQVYTWGHNSRGQLGTGDTKDRFTPSQVCKPLSAAKCIHVACGGQHTLALTEHDDVFGFGSDRHGQLGLGXXXXXQGGYIFPVPSRCDAG 720
            +G  D    PQ++    G  V  +AAG EH+ A+TE GDLY +G    G LGLG        TP++V S+    +  +ACG  HT  ++SSG L+T+G +++G LG  G  ED       +P L+  L   C+ QI  G +HT+ALT  G++Y WG N  GQLG GD  D  +P QV  P    K   ++CG +HTLALTE  +VF +G    GQLG G         +  V S+   G
Sbjct:  198 LGTTDDSLVPQKIQAFQGICVKMIAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRNDCL--TPEKVTSIKGENMVLVACGWRHTIAVSSSGNLYTYGWSKYGQLG-HGDFED-----HLSPHLLEALKDSCISQISGGWRHTMALTSDGRLYGWGWNKFGQLGVGDNDDHCSPVQVKLP-EEQKVKQISCGWRHTLALTERGNVFSWGRGTSGQLGHGDILDRNTPKMIEVISKDGLG 427          
BLAST of mRNA_H-elongata_contig57730.13240.1 vs. uniprot
Match: A0A5C1IXZ3_9CARY (UV resistance locus 8 n=1 Tax=Colobanthus quitensis TaxID=552857 RepID=A0A5C1IXZ3_9CARY)

HSP 1 Score: 154 bits (388), Expect = 1.080e-40
Identity = 87/210 (41.43%), Postives = 124/210 (59.05%), Query Frame = 1
Query:   31 PQRVHLLCGKGVIKMAAGLEHSLALTESGDLYSFGDNLSGQLGLGHNLTAKEQTPQRVPSLSKAKVTQMACGQDHTAVITSSGKLFTFGNNRFGALGLSGHAEDGPPIVASNPQLVTTLSGKCVVQIGCGLQHTVALTRTGQVYTWGHNSRGQLGTGDTKDRFTPSQVCKPLSAAKCIHVACGGQHTLALTEHDDVFGFGSDRHGQLGLG 660
            PQ++    G  V  +AAG EHS A+TE+GD+Y +G    G LGLG    +    P++V  +   K+T +ACG  HT  +T SG ++T+G +++G LG  G  ED P      P  +  LS K + QI  G +HT+A+T  G++Y WG N  GQ+G GD  DR +P QV  P    K + + CG +HTLA+TE ++VF +G   +GQLG G
Sbjct:  160 PQKIQTFQGVPVKMVAAGAEHSAAVTEAGDVYGWGWGRYGNLGLGDR--SDRLVPEKVSPIDGIKMTLVACGWRHTITVTDSGSIYTYGWSKYGQLG-HGDFEDHP-----TPYKLEALSDKPISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNVDRCSPVQVVFPHDQ-KVVQICCGWRHTLAVTEKNNVFSWGRGTNGQLGHG 360          
BLAST of mRNA_H-elongata_contig57730.13240.1 vs. uniprot
Match: A0A2K3MVP3_TRIPR (Putative E3 ubiquitin-protein ligase HERC1-like protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MVP3_TRIPR)

HSP 1 Score: 153 bits (386), Expect = 1.220e-40
Identity = 87/219 (39.73%), Postives = 131/219 (59.82%), Query Frame = 1
Query:    4 VGFADSHCRPQRVHLLCGKGVIKMAAGLEHSLALTESGDLYSFGDNLSGQLGLGHNLTAKEQTPQRVPSLSKAKVTQMACGQDHTAVITSSGKLFTFGNNRFGALGLSGHAEDGPPIVASNPQLVTTLSGKCVVQIGCGLQHTVALTRTGQVYTWGHNSRGQLGTGDTKDRFTPSQVCKPLSAAKCIHVACGGQHTLALTEHDDVFGFGSDRHGQLGLG 660
            +G  +    PQ++    G  +  +AAG EHS+A+TE+G+LY +G    G LGLG         P++V S+ + K+  +ACG  HT  ++SSG+L+T+G +++G LG  G  ED   +V   P  +  LS K + Q+  G +HT+ALT  G +Y WG N  GQ+G GD  DR  P QV  P    K + ++CG +HT+A+TE D+V+ +G   +GQLG+G
Sbjct:  123 LGTVEDSLVPQKIQTFQGIPIKMVAAGAEHSVAITENGELYGWGWGRYGNLGLGDR--NDRCIPEKVSSVDRDKMVLVACGWRHTISVSSSGELYTYGWSKYGQLG-HGDCED--HLV---PHKLQALSDKLICQVSGGWRHTMALTTGGLLYGWGWNKFGQVGVGDNVDRCAPVQVKFPHDQ-KVVQISCGWRHTIAVTEKDNVYSWGRGTNGQLGIG 332          
BLAST of mRNA_H-elongata_contig57730.13240.1 vs. uniprot
Match: A0A2Z6LRX8_TRISU (Uncharacterized protein n=6 Tax=IRL clade TaxID=2233839 RepID=A0A2Z6LRX8_TRISU)

HSP 1 Score: 152 bits (384), Expect = 3.770e-40
Identity = 87/219 (39.73%), Postives = 130/219 (59.36%), Query Frame = 1
Query:    4 VGFADSHCRPQRVHLLCGKGVIKMAAGLEHSLALTESGDLYSFGDNLSGQLGLGHNLTAKEQTPQRVPSLSKAKVTQMACGQDHTAVITSSGKLFTFGNNRFGALGLSGHAEDGPPIVASNPQLVTTLSGKCVVQIGCGLQHTVALTRTGQVYTWGHNSRGQLGTGDTKDRFTPSQVCKPLSAAKCIHVACGGQHTLALTEHDDVFGFGSDRHGQLGLG 660
            +G  +    PQ++    G  +  +AAG EHS+A+TE+G+LY +G    G LGLG         P++V S+   K+  +ACG  HT  ++SSG+L+T+G +++G LG  G  ED   +V   P  +  LS K + Q+  G +HT+ALT  G +Y WG N  GQ+G GD  DR  P QV  P    K + ++CG +HT+A+TE D+V+ +G   +GQLG+G
Sbjct:  147 LGTTEDSLVPQKIQTFQGIPIKMVAAGAEHSVAITENGELYGWGWGRYGNLGLGDR--NDRCIPEKVSSVDTDKMVLVACGWRHTISVSSSGELYTYGWSKYGQLG-HGDCED--HLV---PHKLQALSDKLICQVAGGWRHTMALTTDGLLYGWGWNKFGQVGVGDNVDRCAPVQVKFPHDQ-KVVQISCGWRHTIAVTEKDNVYSWGRGTNGQLGIG 356          
BLAST of mRNA_H-elongata_contig57730.13240.1 vs. uniprot
Match: A0A0D3BFB2_BRAOL (Uncharacterized protein n=14 Tax=Brassiceae TaxID=981071 RepID=A0A0D3BFB2_BRAOL)

HSP 1 Score: 152 bits (383), Expect = 5.780e-40
Identity = 89/219 (40.64%), Postives = 129/219 (58.90%), Query Frame = 1
Query:    4 VGFADSHCRPQRVHLLCGKGVIKMAAGLEHSLALTESGDLYSFGDNLSGQLGLGHNLTAKEQTPQRVPSLSKAKVTQMACGQDHTAVITSSGKLFTFGNNRFGALGLSGHAEDGPPIVASNPQLVTTLSGKCVVQIGCGLQHTVALTRTGQVYTWGHNSRGQLGTGDTKDRFTPSQVCKPLSAAKCIHVACGGQHTLALTEHDDVFGFGSDRHGQLGLG 660
            +G  +    PQ++ +  G  +  +AAG EH+ A+TE GDLY +G    G LGLG         P+RV S S  K++ +ACG  HT  ++ SG L+T+G +++G LG  G  ED   +V   P  +  LS   + QI  G +HT+ALT  G++Y WG N  GQ+G GD  D+ +P QV  P    K + V+CG +HTLA+TE ++VF +G   +GQLG+G
Sbjct:  155 LGDTEDSLVPQKIRVFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDR--NDRLVPERVTSASGEKMSMVACGWRHTIAVSYSGALYTYGWSKYGQLG-HGDLED--HLV---PHKLEALSNSVISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGDNLDQCSPLQVWFP-DDQKVVQVSCGWRHTLAVTEKNNVFAWGRGTNGQLGIG 364          
BLAST of mRNA_H-elongata_contig57730.13240.1 vs. uniprot
Match: A0A0J8BD98_BETVV (Uncharacterized protein n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8BD98_BETVV)

HSP 1 Score: 152 bits (384), Expect = 5.970e-40
Identity = 87/219 (39.73%), Postives = 127/219 (57.99%), Query Frame = 1
Query:    4 VGFADSHCRPQRVHLLCGKGVIKMAAGLEHSLALTESGDLYSFGDNLSGQLGLGHNLTAKEQTPQRVPSLSKAKVTQMACGQDHTAVITSSGKLFTFGNNRFGALGLSGHAEDGPPIVASNPQLVTTLSGKCVVQIGCGLQHTVALTRTGQVYTWGHNSRGQLGTGDTKDRFTPSQVCKPLSAAKCIHVACGGQHTLALTEHDDVFGFGSDRHGQLGLG 660
            +G A+    PQ++    G  V  +AAG EHS A+TE+G++Y +G    G LGLG         P++  S+   K+  +ACG  HT  +TSSG ++T+G +++G LG  G  ED        P  +  LSG+ + QI  G +HT+A+T  G++Y WG N  GQ+G GD  DR  P QV  P +  K + + CG +HTLA+TE ++VF +G   +GQLG G
Sbjct:  164 IGTAEDSLVPQKIQTFQGIPVKMVAAGAEHSAAVTEAGEVYGWGWGRYGNLGLGDR--KDRLIPEKALSIDGIKMVLVACGWRHTITVTSSGSIYTYGWSKYGQLG-HGDFED-----HLTPFKLEALSGQIISQISGGWRHTMAVTSDGKLYGWGWNKFGQVGVGDNADRCFPVQVSFP-NDQKVVQICCGWRHTLAVTERNNVFSWGRGTNGQLGHG 373          
BLAST of mRNA_H-elongata_contig57730.13240.1 vs. uniprot
Match: A0A2C9JZK3_BIOGL (Uncharacterized protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9JZK3_BIOGL)

HSP 1 Score: 150 bits (380), Expect = 7.570e-40
Identity = 81/199 (40.70%), Postives = 119/199 (59.80%), Query Frame = 1
Query:   64 VIKMAAGLEHSLALTESGDLYSFGDNLSGQLGLGHNLTAKEQTPQRVPSLSKAKVTQMACGQDHTAVITSSGKLFTFGNNRFGALGLSGHAEDGPPIVASNPQLVTTLSGKCVVQIGCGLQHTVALTRTGQVYTWGHNSRGQLGTGDTKDRFTPSQVCKPLSAAKCIHVACGGQHTLALTEHDDVFGFGSDRHGQLGLG 660
            VI++AAG  HS+ LT++ ++ ++G N  GQLG G    +   TP+ V SL+   V Q+ACG DHT V+T+ G + T+G+N +G LGL  +      I    P  +T L G  + Q+  G  H++ L+++G VY WG NS GQLG  DT D + P+Q C+PL + +  ++ CG  HT  LT    VF +G+  +GQLG G
Sbjct:   96 VIQVAAGASHSVVLTQAHEVLTWGKNTEGQLGRGDVEESSRGTPKLVKSLAVCCVLQVACGYDHTIVLTNEGCVGTWGSNAYGQLGLGPNKSPWINI----PNFITCLKGLPIAQVAAGGNHSLILSKSGAVYGWGRNSFGQLGLNDTSDCYLPNQ-CRPLRSQRIKYICCGENHTACLTVDGRVFTYGAGTYGQLGHG 289          
BLAST of mRNA_H-elongata_contig57730.13240.1 vs. uniprot
Match: A0A443PPR1_9MAGN (Regulator of chromosome condensation n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A443PPR1_9MAGN)

HSP 1 Score: 151 bits (381), Expect = 1.170e-39
Identity = 86/219 (39.27%), Postives = 124/219 (56.62%), Query Frame = 1
Query:    4 VGFADSHCRPQRVHLLCGKGVIKMAAGLEHSLALTESGDLYSFGDNLSGQLGLGHNLTAKEQTPQRVPSLSKAKVTQMACGQDHTAVITSSGKLFTFGNNRFGALGLSGHAEDGPPIVASNPQLVTTLSGKCVVQIGCGLQHTVALTRTGQVYTWGHNSRGQLGTGDTKDRFTPSQVCKPLSAAKCIHVACGGQHTLALTEHDDVFGFGSDRHGQLGLG 660
            +G  D    PQ +    G  V  +AAG EH+ A+TE GDLY +G    G LGLG    +    P++V ++   K+  +ACG  HT  ++SSG L+T+G +++G LG   H +    ++   P  +  L    V QI  G +HT+ALT  G +Y WG N  GQ+G GD+ DR +P QV  P    K + ++CG +HTLA+T+ D+VF +G    GQLG G
Sbjct:  149 LGTTDDSLVPQNIQAFEGVSVKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDR--SDRLVPEKVSAVDGQKMVSVACGWRHTISVSSSGSLYTYGWSKYGQLG---HGDFEDHLI---PHQLEALRNNFVTQISGGWRHTMALTSDGSLYGWGWNKFGQIGIGDSDDRCSPVQVKFPPDQ-KVVQISCGWRHTLAVTDKDNVFSWGRGTSGQLGHG 358          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57730.13240.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVB9_ECTSI5.540e-12077.45BTB domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A0K9RGF0_SPIOL2.830e-4340.64Uncharacterized protein n=1 Tax=Spinacia oleracea ... [more]
A0A4S8IQ45_MUSBA4.850e-4139.33Uncharacterized protein n=3 Tax=Musa TaxID=4640 Re... [more]
A0A5C1IXZ3_9CARY1.080e-4041.43UV resistance locus 8 n=1 Tax=Colobanthus quitensi... [more]
A0A2K3MVP3_TRIPR1.220e-4039.73Putative E3 ubiquitin-protein ligase HERC1-like pr... [more]
A0A2Z6LRX8_TRISU3.770e-4039.73Uncharacterized protein n=6 Tax=IRL clade TaxID=22... [more]
A0A0D3BFB2_BRAOL5.780e-4040.64Uncharacterized protein n=14 Tax=Brassiceae TaxID=... [more]
A0A0J8BD98_BETVV5.970e-4039.73Uncharacterized protein n=1 Tax=Beta vulgaris subs... [more]
A0A2C9JZK3_BIOGL7.570e-4040.70Uncharacterized protein n=1 Tax=Biomphalaria glabr... [more]
A0A443PPR1_9MAGN1.170e-3939.27Regulator of chromosome condensation n=1 Tax=Cinna... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57730contigH-elongata_contig57730:479..3580 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score375.6
Seed ortholog evalue1.8e-101
Seed eggNOG ortholog2880.D7FVB9
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons6
Model size729
Cds size729
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57730.13240.1prot_H-elongata_contig57730.13240.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57730 479..3580 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930936.946252-CDS-H-elongata_contig57730:478..6911622930936.946252-CDS-H-elongata_contig57730:478..691Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57730 479..691 -
1691679631.9823258-CDS-H-elongata_contig57730:478..6911691679631.9823258-CDS-H-elongata_contig57730:478..691Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57730 479..691 -
1622930936.9657366-CDS-H-elongata_contig57730:1215..12851622930936.9657366-CDS-H-elongata_contig57730:1215..1285Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57730 1216..1285 -
1691679631.99409-CDS-H-elongata_contig57730:1215..12851691679631.99409-CDS-H-elongata_contig57730:1215..1285Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57730 1216..1285 -
1622930936.98223-CDS-H-elongata_contig57730:1965..20391622930936.98223-CDS-H-elongata_contig57730:1965..2039Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57730 1966..2039 -
1691679632.0040033-CDS-H-elongata_contig57730:1965..20391691679632.0040033-CDS-H-elongata_contig57730:1965..2039Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57730 1966..2039 -
1622930937.0046701-CDS-H-elongata_contig57730:2557..26581622930937.0046701-CDS-H-elongata_contig57730:2557..2658Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57730 2558..2658 -
1691679632.017295-CDS-H-elongata_contig57730:2557..26581691679632.017295-CDS-H-elongata_contig57730:2557..2658Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57730 2558..2658 -
1622930937.0333242-CDS-H-elongata_contig57730:2924..30491622930937.0333242-CDS-H-elongata_contig57730:2924..3049Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57730 2925..3049 -
1691679632.035519-CDS-H-elongata_contig57730:2924..30491691679632.035519-CDS-H-elongata_contig57730:2924..3049Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57730 2925..3049 -
1622930937.0508997-CDS-H-elongata_contig57730:3434..35801622930937.0508997-CDS-H-elongata_contig57730:3434..3580Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57730 3435..3580 -
1691679632.0471103-CDS-H-elongata_contig57730:3434..35801691679632.0471103-CDS-H-elongata_contig57730:3434..3580Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57730 3435..3580 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57730.13240.1

>prot_H-elongata_contig57730.13240.1 ID=prot_H-elongata_contig57730.13240.1|Name=mRNA_H-elongata_contig57730.13240.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=243bp
MVGFADSHCRPQRVHLLCGKGVIKMAAGLEHSLALTESGDLYSFGDNLSG
QLGLGHNLTAKEQTPQRVPSLSKAKVTQMACGQDHTAVITSSGKLFTFGN
NRFGALGLSGHAEDGPPIVASNPQLVTTLSGKCVVQIGCGLQHTVALTRT
GQVYTWGHNSRGQLGTGDTKDRFTPSQVCKPLSAAKCIHVACGGQHTLAL
TEHDDVFGFGSDRHGQLGLGQLGLGQGGYIFPVPSRCDAGWC*
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mRNA from alignment at H-elongata_contig57730:479..3580-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57730.13240.1 ID=mRNA_H-elongata_contig57730.13240.1|Name=mRNA_H-elongata_contig57730.13240.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3102bp|location=Sequence derived from alignment at H-elongata_contig57730:479..3580- (Himanthalia elongata Himel1 dioecious)
ATGGTTGGTTTTGCAGACAGCCACTGCCGGCCTCAGAGAGTGCACCTTCT CTGCGGGAAGGGGGTGATTAAGATGGCCGCGGGTCTGGAGCACTCGCTAG CGCTCACGGAGTCAGGCGATCTGTACTCCTTCGGGGACAACCTCAGGTGT GTGCGTGCGTGTTTTGGAAACCCCACATCTGCGATGGAACTGCTGGAACC ATCTCGGCCCAAAAGTCATGGGTACATAAAACCACGGATCATATTATATT CCGGAAGAAATGATCTTGATGCATTTTCGTCGTGATGTGTTGGTCGACTG CTCATGCGTTCAGTTTTGAGGGTTAGATTGTCAGATCTTGGAGGGGAAGC CCTTGACCGTCTGTACAGTGTGCTGTGTGTGATACATGCTATATGTTATA TACTCTATGCTATATACTATACTGGTGTATACCGTGTATGGTCTATTATA GTCATTCGAGATCGTCATCATCTTGGAACTTTCGCAATTTTCTGAAAGGC GTTTTCTACGTGTGAACTGTTTGCGTCGCAGCGGACAGCTAGGCCTCGGC CACAACTTAACCGCAAAGGAGCAGACCCCCCAGAGGGTGCCCTCTCTTAG TAAGGCGAAAGTCACCCAGATGGCGTGCGGACAGGACCACACCGCCGTTA TCACCAGTGAGTTATTGCCAGCGAGTCGGTTGCTCGAATGCGTATTGATC TTGTCCATACCTCTTGTCCGGCCTGCTCCCCCATTCGACCTCTTGGACCT CCTGGGGCTTGTCCTGGACACAAGACAATGTACATCTAAAGCAGCTTGGC GGTAATAAAAAGGTTAAAACGTTACAGCAGGTAGCTTGCTTGCGGCAGAA GTCACAAGAGACTGTTCGATCGCGAGTTGGACCCGGCGATCGTCGGTTGA TGTCCTCACCCGCGTGCCGCAGGCTCAGGAAAGCTTTTTACTTTCGGCAA CAATCGATTTGGGGCGCTCGGACTGTCGGGTCACGCTGAAGACGGCCCCC CGATCGTTGCCTCTAACCCGCAGGTACTGTAATCTATACAACAGTACTGG TTTGCTGTCGCATAGGTACCGTATAGACCATATACGCCCGTTTCTCCATT TTCGCCGTCAACTACGAAGCGACTACGAAGACGGCGAGAGAAACAACGGT GAAATTTTAGACGATCCCGTTAACATTTTACCGAAGACGCTTGTCTTGAA TTCCCAGATCATTGGGAAGTGGAGAGGGTAAGGGGGTATCCCCGGGATGC GTTGCACTCCTGTCACGAACGGCAATACTTGGCACTGTTGTATAGCCCGC GGCCTTCGCCGCTCTCTCCCGTAGGCAACTCTTTGGTGCCGTGTGTTTGT ACTTTCTCTACATGCGTCGCCATGCCGTCACTCCTCATGTTTTGTTTCAT CCCCCCCCCCATCTCCCCTCCATATGGACCCAGGGTTTGTCCCTACGCAC GACTTATTTTCTCCCCCTCTCAGCCAAAGCTTTGCCCGTTTCTATGCCAA TTACCTGCTCGGGGTGCGCGCTGCGTCCTATTACCTTACAGTTGGTAACC ACGCTGAGTGGCAAGTGCGTGGTGCAGATCGGGTGCGGTCTGCAGCACAC CGTCGCGCTGACGCGGTAAGAAACTCGCCGTTTTCCATTCACCTTTTTTC CCACATGCTTTTAACTATATTTCAGTATTGCACAGCGAAAAAGCGTATAA CGACAGGGTTCAAGAACCCACGCAGGGGATGGAAATTGATACTCTCCCTT CCCCAAGTCCTCTTTTTTATCTGCAAACCCGTCTACAGTGTCAGCAAAGC CTCGGTTTTTGTCGAAAGCTTGTACTACATAACATCTTTTCCGAGCTTCT GTGGAATGCTGGTGCTGCTGCCGAGGACGTTGAGCGGGGACACCCACCCT CTCTCCCCCTTTACAGTTTTAGTGTCGAACCTTGTCAACTACAGAAATGG TCGAGTTTGCCGCATCGGCGGGAAGAGAAAAAAAGCGCGCGAGAGTGAGC CAGCTGCAGCCATTCGCGTGCGCTGATGCAGAGCGTGTTTCTCCTCTCCT CTGCTGTTTGATAAGTTGCTACAATAGGCTACCTCGAACCGTGAAGGCCG TTGGTGTCTAAATGTGCACGCGTCGTGTGGCCATTCGGTAAAAACGTTCG GAAAGGACTTTCCGTTCGCTAGCAACTGACGCGAGCCAGGCATTATCGTT ATGACTGAATGCCCTACCGCCCTCCCTCCCTCCCTCCCTCCCTACCCGGT TTATGTATTCTACCGACCTTCTTCCCTCATCTCATCTCATCTCAGGACTG GACAGGTGTACACGTGGGGTCACAACTCGAGGGGTCAGCTCGGCACCGGC GACACGAAAGATAGGGTGAGCGACCCCCACCACAAGACACAAGACCCAAC CGCGAGAACCGAGAGACCTGGAGAGCTGTTTCCAAGAGAGAAAACGGAGT GTCTGTTTCTCGGTCTCGGGCGGTATAAACTACCCGCGCAATGGGATTTA TTCTAATGTAATCGCGGTGCTTCGGGCGGGGCGTCGGGCTACAGCGATAC ATCGTATGTGAAGGGTTTTGAATTCCTTCCCTCTCGCAACCCTACCCACG GGGATTGTTGAGAGATGTCCCCGCTCAAGCAGCGAAAGATAACGCACTTT GCGACGCCGTTCAAAATATTTCCCGCAAAGCGTAAGAGTAGCTTTGTAGG AAAGGAAGAGGTTTCTAAATATCCCCGAGGTACTTCGAAATCCTTCATTT GTCTTGGCGTGACGTCACGGGGCGTCCGGTCACCGTATCTCGCCGTAGAT AAAATGCGCACCAAAATTCGCAATCCCTTCTGACGACCGAAGCTGAACAG TCGCTGGACCCGTTCACCTCCCCCCTCCCTCGTCCGCAGTTCACGCCTTC TCAGGTATGCAAACCTCTGTCGGCCGCAAAGTGCATCCACGTGGCCTGTG GGGGGCAACACACGTTAGCTCTGACGGAGCACGACGACGTCTTCGGCTTC GGCTCTGACAGACACGGACAGCTCGGGCTGGGACAGCTTGGCCTAGGACA AGGGGGCTATATCTTTCCCGTCCCCTCCAGGTGTGATGCCGGTTGGTGCT AA
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Coding sequence (CDS) from alignment at H-elongata_contig57730:479..3580-

>mRNA_H-elongata_contig57730.13240.1 ID=mRNA_H-elongata_contig57730.13240.1|Name=mRNA_H-elongata_contig57730.13240.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1458bp|location=Sequence derived from alignment at H-elongata_contig57730:479..3580- (Himanthalia elongata Himel1 dioecious)
ATGGTTGGTTTTGCAGACAGCCACTGCCGGCCTCAGAGAGTGCACCTTCT
CTGCGGGAAGGGGGTGATTAAGATGGCCGCGGGTCTGGAGCACTCGCTAG
CGCTCACGGAGTCAGGCGATCTGTACTCCTTCGGGGACAACCTCAGATGG
TTGGTTTTGCAGACAGCCACTGCCGGCCTCAGAGAGTGCACCTTCTCTGC
GGGAAGGGGGTGATTAAGATGGCCGCGGGTCTGGAGCACTCGCTAGCGCT
CACGGAGTCAGGCGATCTGTACTCCTTCGGGGACAACCTCAGCGGACAGC
TAGGCCTCGGCCACAACTTAACCGCAAAGGAGCAGACCCCCCAGAGGGTG
CCCTCTCTTAGTAAGGCGAAAGTCACCCAGATGGCGTGCGGACAGGACCA
CACCGCCGTTATCACCACGGACAGCTAGGCCTCGGCCACAACTTAACCGC
AAAGGAGCAGACCCCCCAGAGGGTGCCCTCTCTTAGTAAGGCGAAAGTCA
CCCAGATGGCGTGCGGACAGGACCACACCGCCGTTATCACCAGCTCAGGA
AAGCTTTTTACTTTCGGCAACAATCGATTTGGGGCGCTCGGACTGTCGGG
TCACGCTGAAGACGGCCCCCCGATCGTTGCCTCTAACCCGCAGGCTCAGG
AAAGCTTTTTACTTTCGGCAACAATCGATTTGGGGCGCTCGGACTGTCGG
GTCACGCTGAAGACGGCCCCCCGATCGTTGCCTCTAACCCGCAGTTGGTA
ACCACGCTGAGTGGCAAGTGCGTGGTGCAGATCGGGTGCGGTCTGCAGCA
CACCGTCGCGCTGACGCGTTGGTAACCACGCTGAGTGGCAAGTGCGTGGT
GCAGATCGGGTGCGGTCTGCAGCACACCGTCGCGCTGACGCGGACTGGAC
AGGTGTACACGTGGGGTCACAACTCGAGGGGTCAGCTCGGCACCGGCGAC
ACGAAAGATAGGGACTGGACAGGTGTACACGTGGGGTCACAACTCGAGGG
GTCAGCTCGGCACCGGCGACACGAAAGATAGGTTCACGCCTTCTCAGGTA
TGCAAACCTCTGTCGGCCGCAAAGTGCATCCACGTGGCCTGTGGGGGGCA
ACACACGTTAGCTCTGACGGAGCACGACGACGTCTTCGGCTTCGGCTCTG
ACAGACACGGACAGCTCGGGCTGGGACAGCTTGGCCTAGGACAAGGGGGC
TATATCTTTCCCGTCCCCTCCAGGTGTGATGCCGGTTGGTGCTAATTCAC
GCCTTCTCAGGTATGCAAACCTCTGTCGGCCGCAAAGTGCATCCACGTGG
CCTGTGGGGGGCAACACACGTTAGCTCTGACGGAGCACGACGACGTCTTC
GGCTTCGGCTCTGACAGACACGGACAGCTCGGGCTGGGACAGCTTGGCCT
AGGACAAGGGGGCTATATCTTTCCCGTCCCCTCCAGGTGTGATGCCGGTT
GGTGCTAA
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