mRNA_H-elongata_contig5744.13212.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig5744.13212.1 vs. uniprot
Match: A0A6H5K9Q8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9Q8_9PHAE) HSP 1 Score: 308 bits (789), Expect = 6.740e-100 Identity = 168/320 (52.50%), Postives = 194/320 (60.62%), Query Frame = 1
Query: 1 QVVADRNAGMLAGPGGGHEHIHCSLRRLNSAQVPLQILGDGDWDEPGDTFGRSRV----------------RPMAVVSAKYYFNGDATVVFRYRLYSFHACQENRRGQKGEVEMRLWRLIPSVEKRLRAEGYDLTNFEWFSGSRGGR--GNMDESGGNGVPSDAVR----VAEQMLGCEIYWSPDEDW--DFTDLEGAANGTGSEEERMARVVCVSEGKDPAEGR-QAFVGLMSEDGEGTWITSQTVDGLEILVKDDIRLSYDRLWVNDRGFDRKGDFVYGNQRGVPYKMRRVLVPGPLEWTLGREWRTEDLYAEKMSAI 885
QVVADR AGM GPGGGHEHIHCSL++L+ A+VP Q+ RP+AVV+AKYYFNGD+ VVFRYRLYSFHAC N G +GE MRLWRL+P VE RLRA YDLT+F W R ++ N S R V E+M GCEIYW + D + G +G G ++ V G+D A G ++FVGLM +D GTW+ SQ VDGLEILVKDD+RL D LWVNDRGFDR G+FVYGNQR VPYKMRRV GPLEWTLG RTE YAEKMSAI
Sbjct: 75 QVVADRKAGMTPGPGGGHEHIHCSLKQLDPAEVPGQVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPLAVVAAKYYFNGDSNVVFRYRLYSFHACPPNTPGARGEAVMRLWRLLPHVEARLRANSYDLTSFSWSDDDSNQREPSRGSDNASNDRCSKEGRTGNDVVERMFGCEIYWGRHQAGGEDEKSMPGGISGPGKQDANGGAVPERGAGEDAAGGGGKSFVGLMGKDDSGTWVESQNVDGLEILVKDDLRLWPDSLWVNDRGFDRDGNFVYGNQRDVPYKMRRVTAGGPLEWTLGARHRTEKTYAEKMSAI 394
BLAST of mRNA_H-elongata_contig5744.13212.1 vs. uniprot
Match: D7G1T3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1T3_ECTSI) HSP 1 Score: 155 bits (392), Expect = 1.140e-43 Identity = 79/126 (62.70%), Postives = 91/126 (72.22%), Query Frame = 1
Query: 511 LEGAANGTGSEEERMARVVCVSEGKDPAEGR-QAFVGLMSEDGEGTWITSQTVDGLEILVKDDIRLSYDRLWVNDRGFDRKGDFVYGNQRGVPYKMRRVLVPGPLEWTLGREWRTEDLYAEKMSAI 885
+ G +G G ++ V G+D A G ++FVGLM ED GTW+ SQ VDGLEILVKDD+RL DRLWVNDRGFDR+G+FVYGNQR VPYKMRRV GPLEWTLG RTE YAE+MSAI
Sbjct: 1 MPGGISGPGKQDTDGGAVPERGAGEDAAGGGGKSFVGLMGEDDSGTWVESQNVDGLEILVKDDLRLWPDRLWVNDRGFDRQGNFVYGNQRDVPYKMRRVTAGGPLEWTLGARHRTEKTYAERMSAI 126
BLAST of mRNA_H-elongata_contig5744.13212.1 vs. uniprot
Match: K0TER5_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TER5_THAOC) HSP 1 Score: 134 bits (337), Expect = 5.580e-33 Identity = 107/332 (32.23%), Postives = 148/332 (44.58%), Query Frame = 1
Query: 1 QVVADRNAGMLAGPGGGHEHIHCSLRRLNSAQVPLQILGDGDWDEPGDTFGRSRVRPMAVVSAKYYFNGDATVVFRYRLYSFHACQENRRGQ-KGEVEMRLWRLIPSVEKRLRAEGYD-----LTNFEWFSGSRGGRGNMDE-SGGNGVPSDAVRVAEQMLGCEIYWSPDEDWDFTD----LEGAANGTGSEEERMARVVCVSEGKDPAEGRQAFVGLMSEDGEGTWITS-QTVDGLEILVKDDIRLSYDRLWVNDRGFDRKGD-----------FVYGNQRGVPYKMRRVL--------------VPGPLEWTLGREWRTEDLYAEKMSAI 885
QVV DR G+ G GGGHEHIHC+L VP GD D GDT R + A +YFNG+ +FR+R Y A + V M+L L P +E+ LR + T ++ +SG + + D +PS + + GC++ W +EDWD L+ A N S+E C + +F M G + S + G IL+KD++ L D+ W+NDRG+D G+ FVYGN+RGVPYK+ RV V G L+WTLG +RT Y K+ AI
Sbjct: 93 QVVLDRQHGLTPGAGGGHEHIHCTL-------VPCPDFGD---DAEGDT------RRSRWILAAFYFNGNPQQIFRFRAYQLWAPDHDGMDDGSAVVRMKLNTLSPILEQALRKRSEEPCSWWRTAWKVWSGEDKKKFHEDIIPWSQFIPS----LVSPLQGCDVLW--EEDWDAAKHSYLLDNAYN---SDESNDITSFCDT----------SFHATMEAGSSGAIVDSISMIPGQRILIKDELSLWEDKFWINDRGYDPDGETDSMNENQDMPFVYGNRRGVPYKLERVSHIVSTAGAELQVAPVSGELQWTLGGSYRTPGEYEAKLKAI 389
BLAST of mRNA_H-elongata_contig5744.13212.1 vs. uniprot
Match: A0A7S2PZJ6_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PZJ6_9STRA) HSP 1 Score: 113 bits (282), Expect = 5.400e-25 Identity = 97/366 (26.50%), Postives = 150/366 (40.98%), Query Frame = 1
Query: 1 QVVADRNAGMLAGPGGGHEHIHCSLRRL-NSAQVPLQILGDGDWDEPGDTFGRSRVRPMAVVSAKYYFNGDATVVFRYRLYSFHACQE---NRRGQKGE-VEMRLWRLIPSVEKRLRA----------EGYDLTNFEWFSGSRGGRGNMDESGGNG---VPSDAVR-VAEQMLGCEIYWSPDEDWD-----FTDLEGAANGTGSEEERMARVVCVSEGKDPAEGRQAFVGLMSEDGEGTWITS-QTVDGLEILVKDDIRLSYDRLWVNDRGFDRKG--------------------DFVYGNQRGVPYKMRRV--------------LVPGP------------LEWTLGREWRTEDLYAEKMSAI 885
QV+ DRN + GGGHEHIHC+L ++A Q + W + A +YFNG+ +FR+R+Y + Q+ N GE V M+L L +E++LR E YD+ W + G D++ N S+ ++ + ++GC++ W P WD + +++ N T S + + + +G A M G + S + G IL+KD++ L D W+NDRG+D FVYGN+RGVPYK+ RV + P L WTLG ++R + Y EK+ A+
Sbjct: 76 QVIRDRNHALAPADGGGHEHIHCTLVPCPHTAVTQEQRQNNDQW-----------------ILAAFYFNGNPRQIFRFRMYKLISPQDDDSNSNNIDGEKVRMKLHTLSSELEQQLRQYSDQPCTWWRETYDV----WLNSINEGENESDDNRSNEWNTFRSEGIQHLVSPLVGCDVLWDPQ--WDPKKHAYLNVDEYGNDTSSSPTTINK-------NNNVDGCHA---TMEAGSAGAIVDSISLIPGKRILIKDELSLWEDEFWINDRGYDPDAVVDDNDGGGNDENEDGVGNMPFVYGNRRGVPYKLERVSCISTENTNEGSDDMSSAPPLLLERTIHKQELAWTLGDDFREQTEYEEKLRAV 408
BLAST of mRNA_H-elongata_contig5744.13212.1 vs. uniprot
Match: D7G1T2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1T2_ECTSI) HSP 1 Score: 94.7 bits (234), Expect = 5.730e-20 Identity = 49/102 (48.04%), Postives = 54/102 (52.94%), Query Frame = 1
Query: 1 QVVADRNAGMLAGPGGGHEHIHCSLRRLNSAQVPLQILGDGDWDEPGDTFGRSRVRPMAVVS-----------------AKYYFNGDATVVFRYRLYSFHAC 255
QVVADR AGM GPGGGHEHIHCSL+RL+ A+VP Q+ AKYYFNGD+ VVFRYRLYSFHAC
Sbjct: 75 QVVADRKAGMTPGPGGGHEHIHCSLKRLDPAEVPEQVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKYYFNGDSNVVFRYRLYSFHAC 176
BLAST of mRNA_H-elongata_contig5744.13212.1 vs. uniprot
Match: A0A1X6PC69_PORUM (Uncharacterized protein (Fragment) n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PC69_PORUM) HSP 1 Score: 84.3 bits (207), Expect = 2.660e-16 Identity = 57/160 (35.62%), Postives = 71/160 (44.38%), Query Frame = 1
Query: 1 QVVADRNAGMLAGPGGGHEHIHCSLRRLNSAQVPLQILGDGDWDEPGDTFGRSRVRPMAVVSAKYYFNGDATVVFRYRLYSFHACQENRRGQKGEVEMRLWRLIPSVEKRLRAEGYDLTNFEWFSGSRGGRGNMDESGGNGVPSDAVRVAEQMLGCEIYW 480
QVV +R AG+ GGGHEHIHC+L L GDG W + AKYYFNGD +VVFR RLY E+ G +EMR++RL E LRA GYD+ G+ V + + GCE+YW
Sbjct: 27 QVVEERAAGLSPREGGGHEHIHCTLTSL----------GDG-W-----------------LFAKYYFNGDPSVVFRSRLYRVLPVVES---PVGLLEMRIYRLFAEAEASLRATGYDV---------------------RGLSFTDADVYDWLQGCEVYW 134
BLAST of mRNA_H-elongata_contig5744.13212.1 vs. uniprot
Match: A0A7S2A9U5_TRICV (Hypothetical protein n=2 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A9U5_TRICV) HSP 1 Score: 81.6 bits (200), Expect = 7.160e-15 Identity = 50/122 (40.98%), Postives = 66/122 (54.10%), Query Frame = 1
Query: 589 PAEGRQAFVGLMSEDGEGTWITSQTVDGLEILVKDDIRLSYDRLWVNDRGFDRKG-DFVYGNQRGVPYKMRRV----------------------LVPGPLEWTLGREWRTEDLYAEKMSAI 885
P E Q V + +GE + S + G +I V+D++ L LW+NDRG+D +G DFVYGNQRGVPY+M RV +V G L+WTLG RTE LY E++ AI
Sbjct: 73 PGETFQDGVHAVMVNGEAV-VPSLMIPGAKIRVRDELSLWDGALWINDRGYDPEGGDFVYGNQRGVPYEMGRVTTFLRGDGDGEGSPPLFATERTVVNGDLKWTLGPRHRTEGLYRERVEAI 193
BLAST of mRNA_H-elongata_contig5744.13212.1 vs. uniprot
Match: B7G7Q1_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G7Q1_PHATC) HSP 1 Score: 78.6 bits (192), Expect = 4.700e-13 Identity = 40/90 (44.44%), Postives = 56/90 (62.22%), Query Frame = 1
Query: 649 ITSQTVDGLEILVKDDIRLSYDRLWVNDRGFDRKG-DFVYGNQRGVPYKMRRV----------LVPGPLEWTLGREWRTEDLYAEKMSAI 885
+ SQ + G +IL+KD + L D LW++DRGFD F+YGNQRGVPY++ RV +V L WTLG ++R+E Y +KM A+
Sbjct: 218 VESQMMPGQKILIKDQLSLWPDELWIHDRGFDPDTMRFIYGNQRGVPYRLERVTDIALNNGRTIVQEDLAWTLGPDFRSEGEYQDKMVAV 307
BLAST of mRNA_H-elongata_contig5744.13212.1 vs. uniprot
Match: A0A5J4Z4Z5_PORPP (Uncharacterized protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z4Z5_PORPP) HSP 1 Score: 78.6 bits (192), Expect = 1.110e-12 Identity = 41/74 (55.41%), Postives = 49/74 (66.22%), Query Frame = 1
Query: 610 FVGLMSEDGEGTWITSQTVDGLEILVKDDIRLSYDRLWVNDRGFDRKGDFVYGNQRGVPYKMRRVLVPGPLEWT 831
F G M+ G G + S T+ ILVKDD+ L+ + LWVNDRGFD G FVYGN+RGVPYKM+R LEWT
Sbjct: 408 FRGFMA--GGGCTVFSPTMKS-RILVKDDLILTGNELWVNDRGFDENGHFVYGNRRGVPYKMKRTSCNPHLEWT 478
BLAST of mRNA_H-elongata_contig5744.13212.1 vs. uniprot
Match: A0A7S2SCY1_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SCY1_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 3.090e-12 Identity = 40/109 (36.70%), Postives = 61/109 (55.96%), Query Frame = 1
Query: 607 AFVGLMSEDGEGTWITSQTVDGLEILVKDDIRLSYDRLWVNDRGFDRKG--DFVYGNQRGVPYKMRRV-------------LVPGP-LEWTLGREWRTEDLYAEKMSAI 885
A+ +M GT + SQ + G+ I ++D++ L + W+NDRG D + F+YGNQRG+PYK++RV ++ P L WTLG + RTE Y + M+ I
Sbjct: 146 AYHAVMLAGPNGTTVASQVIPGMYINIRDELSLWKNEFWINDRGLDPQNVSSFIYGNQRGIPYKLKRVTQNNNIFRQWKPRMIHDPKLAWTLGPDHRTEFDYQQMMNEI 254 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5744.13212.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig5744.13212.1 >prot_H-elongata_contig5744.13212.1 ID=prot_H-elongata_contig5744.13212.1|Name=mRNA_H-elongata_contig5744.13212.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=286bp MLAGPGGGHEHIHCSLRRLNSAQVPLQILGDGDWDEPGDTFGRSRVRPMAback to top mRNA from alignment at H-elongata_contig5744:6218..7580+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig5744.13212.1 ID=mRNA_H-elongata_contig5744.13212.1|Name=mRNA_H-elongata_contig5744.13212.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1363bp|location=Sequence derived from alignment at H-elongata_contig5744:6218..7580+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig5744:6218..7580+ >mRNA_H-elongata_contig5744.13212.1 ID=mRNA_H-elongata_contig5744.13212.1|Name=mRNA_H-elongata_contig5744.13212.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1716bp|location=Sequence derived from alignment at H-elongata_contig5744:6218..7580+ (Himanthalia elongata Himel1 dioecious)back to top |