mRNA_H-elongata_contig57329.13198.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57329.13198.1
Unique NamemRNA_H-elongata_contig57329.13198.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig57329.13198.1 vs. uniprot
Match: D8LSF2_ECTSI (SDH1, succinate dehydrogenase subunit 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSF2_ECTSI)

HSP 1 Score: 348 bits (893), Expect = 2.270e-115
Identity = 175/210 (83.33%), Postives = 196/210 (93.33%), Query Frame = 1
Query:    1 QVISPKKHADGTM-EHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDKVAEAPKSETEKSIASMDRTRFADGPTPVAELRLKLQKEMQDHAAVYRTQESLEEGVRRVDDVVGEFKNINVADKSLIWNTNLIEAMELENLLSNSACTIHAAEARKETRGAHAREDFPDRLDDEWMKHSITYFDYETGKTKV 627
            +VI PKK  DG + +HDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIA+I+KPGDKVAEAPKS+TEKS+A++D+TRFADG TPVA+LRLKLQKEMQDHAAVYRTQESL EGV RVD VV +F ++ V D+SLIWNT+LIEAMELENLLSN+ACT+HAAEARKE+RGAHAREDFPDRLDD WMKHS+TYFDY+TGKTKV
Sbjct:  306 EVIRPKKDGDGNVTDHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIAEISKPGDKVAEAPKSQTEKSLAALDKTRFADGATPVADLRLKLQKEMQDHAAVYRTQESLAEGVTRVDGVVNDFSDVKVTDRSLIWNTDLIEAMELENLLSNAACTMHAAEARKESRGAHAREDFPDRLDDTWMKHSMTYFDYDTGKTKV 515          
BLAST of mRNA_H-elongata_contig57329.13198.1 vs. uniprot
Match: A0A6H5KSI2_9PHAE (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI2_9PHAE)

HSP 1 Score: 346 bits (888), Expect = 2.830e-113
Identity = 174/210 (82.86%), Postives = 196/210 (93.33%), Query Frame = 1
Query:    1 QVISPKKHADGTM-EHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDKVAEAPKSETEKSIASMDRTRFADGPTPVAELRLKLQKEMQDHAAVYRTQESLEEGVRRVDDVVGEFKNINVADKSLIWNTNLIEAMELENLLSNSACTIHAAEARKETRGAHAREDFPDRLDDEWMKHSITYFDYETGKTKV 627
            +VI PKK  DG + +HDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIA+I+KPGDKVAEAPK++TEKS+A++D+TRFADG TPVA+LRLKLQKEMQDHAAVYRTQESL EGV RVD VV +F ++ V D+SLIWNT+LIEAMELENLLSN+ACT+HAAEARKE+RGAHAREDFPDRLDD WMKHS+TYFDY+TGKTKV
Sbjct:  416 EVIRPKKDGDGNVTDHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIAEISKPGDKVAEAPKAQTEKSLAALDKTRFADGATPVADLRLKLQKEMQDHAAVYRTQESLAEGVTRVDGVVKDFNDVKVTDRSLIWNTDLIEAMELENLLSNAACTMHAAEARKESRGAHAREDFPDRLDDTWMKHSMTYFDYDTGKTKV 625          
BLAST of mRNA_H-elongata_contig57329.13198.1 vs. uniprot
Match: A0A835YUP3_9STRA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUP3_9STRA)

HSP 1 Score: 288 bits (736), Expect = 6.900e-91
Identity = 146/209 (69.86%), Postives = 175/209 (83.73%), Query Frame = 1
Query:    1 QVISPKKHADGTMEHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDKVAEAPKSETEKSIASMDRTRFADGPTPVAELRLKLQKEMQDHAAVYRTQESLEEGVRRVDDVVGEFKNINVADKSLIWNTNLIEAMELENLLSNSACTIHAAEARKETRGAHAREDFPDRLDDEWMKHSITYFDYETGKTKV 627
            +V+ P+K+A+G ++ DAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDKV +APK+ET++++ ++D  R+A G T  AELRLKLQ+ MQD+AAVYRTQE+L  GV  VD VV EF ++ V D+SLIWNT+LIE MEL NLL N+ACT+HAAEARKE+RGAHAREDF DR D  WMKH++  FD   GKT +
Sbjct:  384 EVVKPRKNANGDIDQDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDKVQDAPKAETDRALGALDDMRYARGQTSTAELRLKLQRVMQDNAAVYRTQETLAHGVVSVDAVVKEFGDVGVTDRSLIWNTDLIETMELRNLLGNAACTMHAAEARKESRGAHAREDFKDRDDVNWMKHTLATFDESKGKTHL 592          
BLAST of mRNA_H-elongata_contig57329.13198.1 vs. uniprot
Match: A0A7S3ZYC3_9STRA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=3 Tax=cellular organisms TaxID=131567 RepID=A0A7S3ZYC3_9STRA)

HSP 1 Score: 285 bits (730), Expect = 1.270e-89
Identity = 143/210 (68.10%), Postives = 172/210 (81.90%), Query Frame = 1
Query:    1 QVISPKKHADGTM-EHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDKVAEAPKSETEKSIASMDRTRFADGPTPVAELRLKLQKEMQDHAAVYRTQESLEEGVRRVDDVVGEFKNINVADKSLIWNTNLIEAMELENLLSNSACTIHAAEARKETRGAHAREDFPDRLDDEWMKHSITYFDYETGKTKV 627
            +VI  KK A G + +HDA+VPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGD V   P+   +K++  +D  R + GPTP AE+R  +QK MQDHAAVYRTQESL EGV ++D VV  F+++ V+D+SLIWNT+L+E +EL NLL N+A T+HAAEARKE+RGAHARED PDRLDD+WMKH++TY+D  T KT V
Sbjct:  419 EVIHQKKDASGNVVDHDAVVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDAVPPLPRDAGQKTLQDLDDVRHSSGPTPTAEIRRDMQKTMQDHAAVYRTQESLAEGVTKIDKVVDSFQDVGVSDRSLIWNTDLVETLELRNLLPNAAATMHAAEARKESRGAHAREDCPDRLDDDWMKHTMTYYDEATRKTSV 628          
BLAST of mRNA_H-elongata_contig57329.13198.1 vs. uniprot
Match: W7TSA7_9STRA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSA7_9STRA)

HSP 1 Score: 267 bits (682), Expect = 1.500e-82
Identity = 133/209 (63.64%), Postives = 170/209 (81.34%), Query Frame = 1
Query:    1 QVISPKKHADGTMEHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDKVAEAPKSETEKSIASMDRTRFADGPTPVAELRLKLQKEMQDHAAVYRTQESLEEGVRRVDDVVGEFKNINVADKSLIWNTNLIEAMELENLLSNSACTIHAAEARKETRGAHAREDFPDRLDDEWMKHSITYFDYETGKTKV 627
            +VI+PKK ADG+++ D ++PGLFAAGEAACASVHGANRLGANSLLDIVVFGRA ALRIADIAKPGDKV   P    ++S+  +D+ RFA G T  A +R K+QK MQ+HAAVYRTQ+SL EG  ++D+V+  ++++ V D+SL+WNT+LIE++EL NLLSN+A T++AAEARKE+RGAHAREDF +R D  WM H+I  FDY+T KT +
Sbjct:  414 EVIAPKKKADGSLDPDHVIPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADIAKPGDKVPPMPADAGQRSVEDLDKVRFASGSTNTATIRKKMQKTMQEHAAVYRTQDSLAEGKVKIDEVLSTWQDLKVTDRSLMWNTDLIESLELRNLLSNAATTMYAAEARKESRGAHAREDFSERDDANWMMHTIADFDYDTHKTTI 622          
BLAST of mRNA_H-elongata_contig57329.13198.1 vs. uniprot
Match: B8CCT7_THAPS (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCT7_THAPS)

HSP 1 Score: 263 bits (671), Expect = 5.160e-81
Identity = 131/209 (62.68%), Postives = 165/209 (78.95%), Query Frame = 1
Query:    1 QVISPKKHADGTMEHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDKVAEAPKSETEKSIASMDRTRFADGPTPVAELRLKLQKEMQDHAAVYRTQESLEEGVRRVDDVVGEFKNINVADKSLIWNTNLIEAMELENLLSNSACTIHAAEARKETRGAHAREDFPDRLDDEWMKHSITYFDYETGKTKV 627
            +VI    +ADG+   D +VPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACA RIA+IAKPGD +A+AP      S+A +D+ RFA G TP + +R ++Q  MQD AAVYRT+E L EG + +D+VV  F +++V DKSLIWNT+L+E +EL NLL  +A T+H+AE RKE+RGAHA E++PDRLDDEWMKH++ YFD + GKTK+
Sbjct:  404 EVIRTDFNADGSFNSDVVVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACANRIAEIAKPGDAIADAPADVGMDSVAELDKLRFATGSTPTSVIRGEMQHLMQDKAAVYRTEELLAEGKKEIDEVVQSFNDVHVTDKSLIWNTDLVETLELRNLLGCAATTMHSAENRKESRGAHAHENYPDRLDDEWMKHTLAYFDEKEGKTKI 612          
BLAST of mRNA_H-elongata_contig57329.13198.1 vs. uniprot
Match: A0A2R5G9I9_9STRA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G9I9_9STRA)

HSP 1 Score: 262 bits (670), Expect = 5.680e-81
Identity = 137/209 (65.55%), Postives = 166/209 (79.43%), Query Frame = 1
Query:    1 QVISPKKHADGTMEHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDKVAEAPKSETEKSIASMDRTRFADGPTPVAELRLKLQKEMQDHAAVYRTQESLEEGVRRVDDVVGEFKNINVADKSLIWNTNLIEAMELENLLSNSACTIHAAEARKETRGAHAREDFPDRLDDEWMKHSITYFDYETGKTKV 627
            QV++P K      + D +VPGL+AAGEAACASVHGANRLGANSLLDIVVFGRACA  I +  KP  KV E P    E SIA++D+ R A+G TP A+LRL+LQK MQ+HAAV+RT E L EGV +VD+VV EF +I V D+SLIWN+++IE +EL+NLL N+ACT+HAAEARKE+RGAHA ED+PDR D EWMKH+IT+FD ETGK KV
Sbjct:  399 QVVNPTKD-----DPDRVVPGLYAAGEAACASVHGANRLGANSLLDIVVFGRACANHIGETLKPSKKV-ELPAGAGEDSIANLDKIRNANGSTPTADLRLRLQKTMQNHAAVFRTNEVLAEGVVKVDEVVQEFSDIKVTDRSLIWNSDVIETLELQNLLGNAACTMHAAEARKESRGAHAHEDYPDRNDKEWMKHTITHFDTETGKVKV 601          
BLAST of mRNA_H-elongata_contig57329.13198.1 vs. uniprot
Match: F0YDU4_AURAN (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDU4_AURAN)

HSP 1 Score: 262 bits (670), Expect = 6.080e-81
Identity = 138/210 (65.71%), Postives = 161/210 (76.67%), Query Frame = 1
Query:    1 QVISPKKHADGTM-EHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDKVAEAPKSETEKSIASMDRTRFADGPTPVAELRLKLQKEMQDHAAVYRTQESLEEGVRRVDDVVGEFKNINVADKSLIWNTNLIEAMELENLLSNSACTIHAAEARKETRGAHAREDFPDRLDDEWMKHSITYFDYETGKTKV 627
            +VI      DG++ +HD +VPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIA+PG  V   P    EK+IA +D  RF+ GP P A++R  +QK MQDHAAVYRT ESL EG  ++   V  F +I V D+SLIWNT+LIE +EL NLL N+A T+ AAEARKE+RGAHARED PDRLDDEWMKH++ YFD  T KT V
Sbjct:  395 EVIRQVTGPDGSVIDHDEVVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAEPGAPVPPLPADAAEKTIADVDAIRFSSGPRPTADVRKDMQKTMQDHAAVYRTAESLAEGCEKIQKNVEAFADIGVTDRSLIWNTDLIETIELRNLLPNAATTMFAAEARKESRGAHAREDTPDRLDDEWMKHTMCYFDEATNKTTV 604          
BLAST of mRNA_H-elongata_contig57329.13198.1 vs. uniprot
Match: A0A7S2RM10_9STRA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RM10_9STRA)

HSP 1 Score: 261 bits (666), Expect = 3.030e-80
Identity = 131/209 (62.68%), Postives = 164/209 (78.47%), Query Frame = 1
Query:    1 QVISPKKHADGTMEHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDKVAEAPKSETEKSIASMDRTRFADGPTPVAELRLKLQKEMQDHAAVYRTQESLEEGVRRVDDVVGEFKNINVADKSLIWNTNLIEAMELENLLSNSACTIHAAEARKETRGAHAREDFPDRLDDEWMKHSITYFDYETGKTKV 627
            +VI  KK+ADGT +HD+IVPGLFAAGE ACASVHGANRLGANSLLDIVVFGRACA RIA+IAKPG  V   PK   + SIA +D+ R+A G  P A LRL++Q+ MQ++AAVYRT E L EG  ++D VV +F+++  +D+SLIWNT+LIE +EL NLL N++ T+HAA  R E+RGAHARED PDR D+ WMKH++ YFD  TG++ V
Sbjct:  407 EVIRVKKNADGTEDHDSIVPGLFAAGEVACASVHGANRLGANSLLDIVVFGRACANRIAEIAKPGAPVPPLPKDAGDASIADLDKLRYAKGDVPTASLRLEMQQVMQENAAVYRTAEVLSEGCEKIDAVVDKFQHVGTSDRSLIWNTDLIETLELRNLLGNASTTMHAASQRTESRGAHAREDTPDRDDENWMKHTMAYFDESTGRSTV 615          
BLAST of mRNA_H-elongata_contig57329.13198.1 vs. uniprot
Match: A0A7S4KAF0_9STRA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4KAF0_9STRA)

HSP 1 Score: 259 bits (663), Expect = 1.190e-79
Identity = 127/212 (59.91%), Postives = 168/212 (79.25%), Query Frame = 1
Query:    1 QVISPKKHADGTMEHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDKVAEA---PKSETEKSIASMDRTRFADGPTPVAELRLKLQKEMQDHAAVYRTQESLEEGVRRVDDVVGEFKNINVADKSLIWNTNLIEAMELENLLSNSACTIHAAEARKETRGAHAREDFPDRLDDEWMKHSITYFDYETGKTKV 627
            +V+  K  + G  E D +VPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIAD+A PGD + +A   P     +S+A +D+ R+ADG TP +E+R ++Q  MQDHAAVYRT E LEEG  ++D+VV  F ++ V D+SL+WNT+L+E +EL NLL+N++ T+H+A  RKE+RGAHA E++PDR D+EWMKH+++YF+ ETGK++V
Sbjct:  420 EVVRTKFDSKGEFEQDEVVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADLAAPGDDIPDATGGPDGAGMQSLADLDKLRYADGSTPTSEIRGEMQAVMQDHAAVYRTSELLEEGAGKIDEVVQSFADVGVTDRSLVWNTDLVETLELRNLLANASTTMHSANVRKESRGAHAHENYPDRDDNEWMKHTVSYFNEETGKSEV 631          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57329.13198.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSF2_ECTSI2.270e-11583.33SDH1, succinate dehydrogenase subunit 1 n=1 Tax=Ec... [more]
A0A6H5KSI2_9PHAE2.830e-11382.86Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
A0A835YUP3_9STRA6.900e-9169.86Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
A0A7S3ZYC3_9STRA1.270e-8968.10Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
W7TSA7_9STRA1.500e-8263.64Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
B8CCT7_THAPS5.160e-8162.68Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
A0A2R5G9I9_9STRA5.680e-8165.55Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
F0YDU4_AURAN6.080e-8165.71Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
A0A7S2RM10_9STRA3.030e-8062.68Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
A0A7S4KAF0_9STRA1.190e-7959.91Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57329contigH-elongata_contig57329:425..3610 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score352.8
Seed ortholog evalue1.1e-94
Seed eggNOG ortholog2880.D8LSF2
Preferred nameSDH1
KEGG rclassRC00045
KEGG koko:K00234
KEGG ReactionR02164
KEGG Pathwayko00020,ko00190,ko01100,ko01110,ko01120,ko01130,ko01200,ko04714,ko04932,ko05010,ko05012,ko05016,map00020,map00190,map01100,map01110,map01120,map01130,map01200,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00009,M00011,M00148
GOsGO:0000104,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005749,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006119,GO:0006121,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008177,GO:0009055,GO:0009060,GO:0009061,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009314,GO:0009416,GO:0009453,GO:0009605,GO:0009628,GO:0009987,GO:0015980,GO:0016020,GO:0016310,GO:0016491,GO:0016627,GO:0016635,GO:0016999,GO:0017144,GO:0019637,GO:0019693,GO:0019752,GO:0019866,GO:0022900,GO:0022904,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0034641,GO:0040011,GO:0042330,GO:0042331,GO:0042773,GO:0042775,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045257,GO:0045273,GO:0045281,GO:0045283,GO:0045333,GO:0046034,GO:0046483,GO:0046956,GO:0050896,GO:0052128,GO:0055086,GO:0055114,GO:0070469,GO:0071704,GO:0072350,GO:0072521,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204
EggNOG free text desc.anaerobic respiration
EggNOG OGsCOG1053@1,KOG2403@2759
Ec32 orthologEc-21_003470.1
EC1.3.5.1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSDH1, succinate dehydrogenase subunit 1
Ec32 orthologEc-21_003470.2
Exons4
Model size651
Cds size651
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57329.13198.1prot_H-elongata_contig57329.13198.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57329 425..3610 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930932.1063502-CDS-H-elongata_contig57329:424..6251622930932.1063502-CDS-H-elongata_contig57329:424..625Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57329 425..625 +
1691679629.9990442-CDS-H-elongata_contig57329:424..6251691679629.9990442-CDS-H-elongata_contig57329:424..625Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57329 425..625 +
1622930932.120778-CDS-H-elongata_contig57329:1799..19671622930932.120778-CDS-H-elongata_contig57329:1799..1967Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57329 1800..1967 +
1691679630.0115852-CDS-H-elongata_contig57329:1799..19671691679630.0115852-CDS-H-elongata_contig57329:1799..1967Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57329 1800..1967 +
1622930932.1398149-CDS-H-elongata_contig57329:2495..25481622930932.1398149-CDS-H-elongata_contig57329:2495..2548Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57329 2496..2548 +
1691679630.02113-CDS-H-elongata_contig57329:2495..25481691679630.02113-CDS-H-elongata_contig57329:2495..2548Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57329 2496..2548 +
1622930932.1566641-CDS-H-elongata_contig57329:3381..36101622930932.1566641-CDS-H-elongata_contig57329:3381..3610Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57329 3382..3610 +
1691679630.0310087-CDS-H-elongata_contig57329:3381..36101691679630.0310087-CDS-H-elongata_contig57329:3381..3610Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57329 3382..3610 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57329.13198.1

>prot_H-elongata_contig57329.13198.1 ID=prot_H-elongata_contig57329.13198.1|Name=mRNA_H-elongata_contig57329.13198.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=217bp
QVISPKKHADGTMEHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVF
GRACALRIADIAKPGDKVAEAPKSETEKSIASMDRTRFADGPTPVAELRL
KLQKEMQDHAAVYRTQESLEEGVRRVDDVVGEFKNINVADKSLIWNTNLI
EAMELENLLSNSACTIHAAEARKETRGAHAREDFPDRLDDEWMKHSITYF
DYETGKTKVMRWGRRG*
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mRNA from alignment at H-elongata_contig57329:425..3610+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57329.13198.1 ID=mRNA_H-elongata_contig57329.13198.1|Name=mRNA_H-elongata_contig57329.13198.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3186bp|location=Sequence derived from alignment at H-elongata_contig57329:425..3610+ (Himanthalia elongata Himel1 dioecious)
CAGGTAATCAGTCCTAAGAAACACGCGGACGGCACTATGGAGCACGATGC TATCGTTCCCGGCCTCTTCGCCGCGGGAGAGGCGGCCTGTGCGTCCGTGC ACGGTGCCAACCGCCTGGGCGCCAACTCCCTCCTCGACATCGTCGTATTC GGCCGAGCGTGCGCGCTGCGCATCGCGGACATCGCCAAGCCTGGGGATAA GGTGGGGGTGGAGAAAGGAGGAAGGGTGTATGTACGCTTGCATGCTTTTT TTCTTTCCGTTAGGTTACGGGGGGAGGTAAAAGAGATGAAGGTGGAGTGC TGTGTCCTGGTGTGTGGCTTGACGTAGGAAGGTAACATGGTATGGCATGA TGAGGTGTGTGGTGTAACATGGTATGGCATGATGAGGTGTGTGGTGTAAC ATGGTATGTCATAGTGAGGTGTGTGGTGTAACATGGTATGGCATGATGAG GTATTAGGTGTAACATGGTATGTCATGATGAGGTGTGTGGTGTAACGTGG TATGCCATAATGAGGTGTGTGGTGTAACATTGTATGTCATAATGAGGTGT GTGGTGTAACATGGTATGGCATGATGAGGTATTAGGTGTAACATGGTATT TCATGATGAGGTGTGTGGTGTAACATGGTATGGCATGATGAGGTGTGTGG TGTAACATGGTATTTCATGATGAGGTGTGTGGTGTAACATGGTATGGCAT GATGAGGTGTGTGGTGTAACATGGTATGGCAGGATGAGGTGTGTGGTGTA ACATGGTATGGCATGATGAGGTGTGTGGTGTAACATGGTATGGCAGGATG AGGTAGTTGAGTTAACTAGATATTTCATGTTGAGGTGTGTGGTTGAAAAA GGTANNNNNNNNNNAGGTGTTGGGTATGTGATGGTATTTCAGGATTATGT TTTTGCTGTAACATTGTATGGCATGATGAGGTGTGTGGTGTAACATGGTA TGGCAGGATGAGGTAGGTGTGTGGTGTAACATGGTATGGCAGGATGAGGT AGGTGTGTGGTGTAACATGGTATGGCATGATAAGGTAGGTGTGTGGTGTA ACATGGTATTACCGCCATTGCCGAGCATTTATGTAATTGTTGGTGTGAAG TTGTGTAGCTGTTGTGCGTGTTGTTTTACCCTTTCTTCTCCATTCTTTCA CTTGTCTCCTCCTTACAGTCCTTCTCGGAACACTAGCATGCGAACGCGCA GTTTTTTTTTCCAAAATACTTGACAAAACACGCGAAAAAACGCTTGAAAT AATCAGTAGAGCATCACCGTCCCGTTGCACGCCCGCGTTTGCTCTTCCCG ACTCAACGAACGACCCCTTGCGTGTGATGGATTTGAACACGCCGTAACGG ACCAACGGGTTAACGGACGCGAAAGGTGGCCGAGGCGCCCAAGTCCGAGA CGGAGAAGAGCATCGCGTCCATGGACCGGACTCGCTTCGCGGACGGACCA ACGCCCGTGGCAGAGCTGCGTCTCAAGCTGCAAAAGGAAATGCAGGACCA CGCCGCGGTGTACAGGACGCAGGAATCCCTCGAGGAGGGGGTGGTGAGAG AGAGAGACGAGGGAATAGCCACGTATGTTTTCTACGAGAAAATGTGTTGA GAAATGAGTTATTTTTAACAGGGTTTCCCCCTCCCCCCAAAAGGATGTTT TCTTCTATCTTACCGGAGATTGAGTGGTGGCGCGGAGGCGTCGTAAGGTG GTGAAAGTCGTCTACCGCCCCGAAATAAATAAACAGGCCAGAAACACCAA AGAAACCCCGCATCATACGCCACCCACCACCCATCAGCCATCAGCCATCA CGCTTTCACAACGACGTAAGGATGAAGGATCTCGCTGGCGCGTCAGAGCG TGTGGCGCGAGTTCAACGGGCGCGTTGCTTTCACGAATCGACTGTCCGTC GTCGCGGAAGGCTGTTTCGATGCGCAGCCTTCTGTATTTGGATCACCCGC TTCAACCCCCTCGAACGGTCCCATTGTTTCACCTGCGCTGGTCGCCATCC CTCCCCCCCCATTTCCTCTTTCCTTCTTGAAATTCCGCTTTTGTCTGAAT CGGTGACACACGCCTCGACAGAGGAGAGTGGACGATGTGGTGGGAGAATT TAAGAATATTAACGTCGCTGACAAGTAAGTAACCCCGATGGGTGTACCCG CCCCAGCCGATGCGTGCGCGTGTGTGTGTGTGTGTATTTATTAAATTGCA CATAACCGCGCAATCCGGCCCTGTTGTCCTAGTGTGTGCGTGTGCGCATG CGTGCTATGCCTAGGGGAAAATGAACTCGTAGACACCTTCCCGCTGTAGG CTTCGGGTGAAATGTTGTTGTGCGTGCTCGATGTCTGTGTGCGAAAGGCG CCAACTTTTTGGCTCCGAGGAATGAATGATGAATGTAGGAGCCAAGAAAC GAGCGAACGAACGTACTCGGCGCTGTTTTTTCTTCTTTTTTTCGTTGCCG TGTCTTGTCTTGTCGCCAGATGATGTCATCATGATGTTGAGGCAAGTCGA AGCACGCGCGATATTCGGGGGGCAGGGGAAAGGAAATATATTGCACGTTT AGCTCCCTTAAGTGCATAAGTGCGTGTGTGTACAGTGTACATACACATGA GTCTCTTTGTTGAGGTTTCCGCGTGGGCAGGCGTCCCCCCCCTCCCCCAT TGCTTCACTGACGCCCTACCCCCTTTCCCTTCTCTCACCCCCCCTTCTCA ACAATCAGACTGGCAACCGGCCCTAGCCGGCGCCCAAACAGTAGAACGAT GTTACCGAGGGTCCTAACCAACACCAAAGCGGTATTCCGCTATTCATGAG CCGTGCGTGAACGAACCTCAACCGAATCTGTCGGAATCGATTGATCACCC GACCGTTCTAAATCGAATTGAATGGAATGGAAATTGAGCCGAATCCTAAG CGAACCGTAATAGGTGAAGCCGAACTAACACCGAAATTAATCCCTGGGGG AAAAAAGGTCGCTAATCTGGAACACAAACCTGATCGAGGCGATGGAGCTG GAAAACCTTCTCTCGAACTCGGCGTGCACCATTCACGCGGCCGAAGCCAG GAAGGAGACCCGTGGCGCCCACGCCCGAGAGGACTTCCCCGACCGCCTGG ACGACGAGTGGATGAAGCACAGCATTACATACTTTGACTATGAGACGGGC AAGACAAAGGTGATGCGATGGGGACGGAGGGGGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig57329:425..3610+

>mRNA_H-elongata_contig57329.13198.1 ID=mRNA_H-elongata_contig57329.13198.1|Name=mRNA_H-elongata_contig57329.13198.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1302bp|location=Sequence derived from alignment at H-elongata_contig57329:425..3610+ (Himanthalia elongata Himel1 dioecious)
CAGGTAATCAGTCCTAAGAAACACGCGGACGGCACTATGGAGCACGATGC
TATCGTTCCCGGCCTCTTCGCCGCGGGAGAGGCGGCCTGTGCGTCCGTGC
ACGGTGCCAACCGCCTGGGCGCCAACTCCCTCCTCGACATCGTCGTATTC
GGCCGAGCGTGCGCGCTGCGCATCGCGGACATCGCCAAGCCTGGGGATAA
GCAGGTAATCAGTCCTAAGAAACACGCGGACGGCACTATGGAGCACGATG
CTATCGTTCCCGGCCTCTTCGCCGCGGGAGAGGCGGCCTGTGCGTCCGTG
CACGGTGCCAACCGCCTGGGCGCCAACTCCCTCCTCGACATCGTCGTATT
CGGCCGAGCGTGCGCGCTGCGCATCGCGGACATCGCCAAGCCTGGGGATA
AGGTGGCCGAGGCGCCCAAGTCCGAGACGGAGAAGAGCATCGCGTCCATG
GACCGGACTCGCTTCGCGGACGGACCAACGCCCGTGGCAGAGCTGCGTCT
CAAGCTGCAAAAGGAAATGCAGGACCACGCCGCGGTGTACAGGACGCAGG
AATCCCTCGAGGAGGGGGTGGTGGCCGAGGCGCCCAAGTCCGAGACGGAG
AAGAGCATCGCGTCCATGGACCGGACTCGCTTCGCGGACGGACCAACGCC
CGTGGCAGAGCTGCGTCTCAAGCTGCAAAAGGAAATGCAGGACCACGCCG
CGGTGTACAGGACGCAGGAATCCCTCGAGGAGGGGGTGAGGAGAGTGGAC
GATGTGGTGGGAGAATTTAAGAATATTAACGTCGCTGACAAAGGAGAGTG
GACGATGTGGTGGGAGAATTTAAGAATATTAACGTCGCTGACAAGTCGCT
AATCTGGAACACAAACCTGATCGAGGCGATGGAGCTGGAAAACCTTCTCT
CGAACTCGGCGTGCACCATTCACGCGGCCGAAGCCAGGAAGGAGACCCGT
GGCGCCCACGCCCGAGAGGACTTCCCCGACCGCCTGGACGACGAGTGGAT
GAAGCACAGCATTACATACTTTGACTATGAGACGGGCAAGACAAAGGTGA
TGCGATGGGGACGGAGGGGGTAGGTCGCTAATCTGGAACACAAACCTGAT
CGAGGCGATGGAGCTGGAAAACCTTCTCTCGAACTCGGCGTGCACCATTC
ACGCGGCCGAAGCCAGGAAGGAGACCCGTGGCGCCCACGCCCGAGAGGAC
TTCCCCGACCGCCTGGACGACGAGTGGATGAAGCACAGCATTACATACTT
TGACTATGAGACGGGCAAGACAAAGGTGATGCGATGGGGACGGAGGGGGT
AG
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