mRNA_H-elongata_contig57329.13198.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig57329.13198.1 vs. uniprot
Match: D8LSF2_ECTSI (SDH1, succinate dehydrogenase subunit 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSF2_ECTSI) HSP 1 Score: 348 bits (893), Expect = 2.270e-115 Identity = 175/210 (83.33%), Postives = 196/210 (93.33%), Query Frame = 1
Query: 1 QVISPKKHADGTM-EHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDKVAEAPKSETEKSIASMDRTRFADGPTPVAELRLKLQKEMQDHAAVYRTQESLEEGVRRVDDVVGEFKNINVADKSLIWNTNLIEAMELENLLSNSACTIHAAEARKETRGAHAREDFPDRLDDEWMKHSITYFDYETGKTKV 627
+VI PKK DG + +HDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIA+I+KPGDKVAEAPKS+TEKS+A++D+TRFADG TPVA+LRLKLQKEMQDHAAVYRTQESL EGV RVD VV +F ++ V D+SLIWNT+LIEAMELENLLSN+ACT+HAAEARKE+RGAHAREDFPDRLDD WMKHS+TYFDY+TGKTKV
Sbjct: 306 EVIRPKKDGDGNVTDHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIAEISKPGDKVAEAPKSQTEKSLAALDKTRFADGATPVADLRLKLQKEMQDHAAVYRTQESLAEGVTRVDGVVNDFSDVKVTDRSLIWNTDLIEAMELENLLSNAACTMHAAEARKESRGAHAREDFPDRLDDTWMKHSMTYFDYDTGKTKV 515
BLAST of mRNA_H-elongata_contig57329.13198.1 vs. uniprot
Match: A0A6H5KSI2_9PHAE (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI2_9PHAE) HSP 1 Score: 346 bits (888), Expect = 2.830e-113 Identity = 174/210 (82.86%), Postives = 196/210 (93.33%), Query Frame = 1
Query: 1 QVISPKKHADGTM-EHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDKVAEAPKSETEKSIASMDRTRFADGPTPVAELRLKLQKEMQDHAAVYRTQESLEEGVRRVDDVVGEFKNINVADKSLIWNTNLIEAMELENLLSNSACTIHAAEARKETRGAHAREDFPDRLDDEWMKHSITYFDYETGKTKV 627
+VI PKK DG + +HDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIA+I+KPGDKVAEAPK++TEKS+A++D+TRFADG TPVA+LRLKLQKEMQDHAAVYRTQESL EGV RVD VV +F ++ V D+SLIWNT+LIEAMELENLLSN+ACT+HAAEARKE+RGAHAREDFPDRLDD WMKHS+TYFDY+TGKTKV
Sbjct: 416 EVIRPKKDGDGNVTDHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIAEISKPGDKVAEAPKAQTEKSLAALDKTRFADGATPVADLRLKLQKEMQDHAAVYRTQESLAEGVTRVDGVVKDFNDVKVTDRSLIWNTDLIEAMELENLLSNAACTMHAAEARKESRGAHAREDFPDRLDDTWMKHSMTYFDYDTGKTKV 625
BLAST of mRNA_H-elongata_contig57329.13198.1 vs. uniprot
Match: A0A835YUP3_9STRA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUP3_9STRA) HSP 1 Score: 288 bits (736), Expect = 6.900e-91 Identity = 146/209 (69.86%), Postives = 175/209 (83.73%), Query Frame = 1
Query: 1 QVISPKKHADGTMEHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDKVAEAPKSETEKSIASMDRTRFADGPTPVAELRLKLQKEMQDHAAVYRTQESLEEGVRRVDDVVGEFKNINVADKSLIWNTNLIEAMELENLLSNSACTIHAAEARKETRGAHAREDFPDRLDDEWMKHSITYFDYETGKTKV 627
+V+ P+K+A+G ++ DAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDKV +APK+ET++++ ++D R+A G T AELRLKLQ+ MQD+AAVYRTQE+L GV VD VV EF ++ V D+SLIWNT+LIE MEL NLL N+ACT+HAAEARKE+RGAHAREDF DR D WMKH++ FD GKT +
Sbjct: 384 EVVKPRKNANGDIDQDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDKVQDAPKAETDRALGALDDMRYARGQTSTAELRLKLQRVMQDNAAVYRTQETLAHGVVSVDAVVKEFGDVGVTDRSLIWNTDLIETMELRNLLGNAACTMHAAEARKESRGAHAREDFKDRDDVNWMKHTLATFDESKGKTHL 592
BLAST of mRNA_H-elongata_contig57329.13198.1 vs. uniprot
Match: A0A7S3ZYC3_9STRA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=3 Tax=cellular organisms TaxID=131567 RepID=A0A7S3ZYC3_9STRA) HSP 1 Score: 285 bits (730), Expect = 1.270e-89 Identity = 143/210 (68.10%), Postives = 172/210 (81.90%), Query Frame = 1
Query: 1 QVISPKKHADGTM-EHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDKVAEAPKSETEKSIASMDRTRFADGPTPVAELRLKLQKEMQDHAAVYRTQESLEEGVRRVDDVVGEFKNINVADKSLIWNTNLIEAMELENLLSNSACTIHAAEARKETRGAHAREDFPDRLDDEWMKHSITYFDYETGKTKV 627
+VI KK A G + +HDA+VPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGD V P+ +K++ +D R + GPTP AE+R +QK MQDHAAVYRTQESL EGV ++D VV F+++ V+D+SLIWNT+L+E +EL NLL N+A T+HAAEARKE+RGAHARED PDRLDD+WMKH++TY+D T KT V
Sbjct: 419 EVIHQKKDASGNVVDHDAVVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDAVPPLPRDAGQKTLQDLDDVRHSSGPTPTAEIRRDMQKTMQDHAAVYRTQESLAEGVTKIDKVVDSFQDVGVSDRSLIWNTDLVETLELRNLLPNAAATMHAAEARKESRGAHAREDCPDRLDDDWMKHTMTYYDEATRKTSV 628
BLAST of mRNA_H-elongata_contig57329.13198.1 vs. uniprot
Match: W7TSA7_9STRA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSA7_9STRA) HSP 1 Score: 267 bits (682), Expect = 1.500e-82 Identity = 133/209 (63.64%), Postives = 170/209 (81.34%), Query Frame = 1
Query: 1 QVISPKKHADGTMEHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDKVAEAPKSETEKSIASMDRTRFADGPTPVAELRLKLQKEMQDHAAVYRTQESLEEGVRRVDDVVGEFKNINVADKSLIWNTNLIEAMELENLLSNSACTIHAAEARKETRGAHAREDFPDRLDDEWMKHSITYFDYETGKTKV 627
+VI+PKK ADG+++ D ++PGLFAAGEAACASVHGANRLGANSLLDIVVFGRA ALRIADIAKPGDKV P ++S+ +D+ RFA G T A +R K+QK MQ+HAAVYRTQ+SL EG ++D+V+ ++++ V D+SL+WNT+LIE++EL NLLSN+A T++AAEARKE+RGAHAREDF +R D WM H+I FDY+T KT +
Sbjct: 414 EVIAPKKKADGSLDPDHVIPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADIAKPGDKVPPMPADAGQRSVEDLDKVRFASGSTNTATIRKKMQKTMQEHAAVYRTQDSLAEGKVKIDEVLSTWQDLKVTDRSLMWNTDLIESLELRNLLSNAATTMYAAEARKESRGAHAREDFSERDDANWMMHTIADFDYDTHKTTI 622
BLAST of mRNA_H-elongata_contig57329.13198.1 vs. uniprot
Match: B8CCT7_THAPS (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCT7_THAPS) HSP 1 Score: 263 bits (671), Expect = 5.160e-81 Identity = 131/209 (62.68%), Postives = 165/209 (78.95%), Query Frame = 1
Query: 1 QVISPKKHADGTMEHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDKVAEAPKSETEKSIASMDRTRFADGPTPVAELRLKLQKEMQDHAAVYRTQESLEEGVRRVDDVVGEFKNINVADKSLIWNTNLIEAMELENLLSNSACTIHAAEARKETRGAHAREDFPDRLDDEWMKHSITYFDYETGKTKV 627
+VI +ADG+ D +VPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACA RIA+IAKPGD +A+AP S+A +D+ RFA G TP + +R ++Q MQD AAVYRT+E L EG + +D+VV F +++V DKSLIWNT+L+E +EL NLL +A T+H+AE RKE+RGAHA E++PDRLDDEWMKH++ YFD + GKTK+
Sbjct: 404 EVIRTDFNADGSFNSDVVVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACANRIAEIAKPGDAIADAPADVGMDSVAELDKLRFATGSTPTSVIRGEMQHLMQDKAAVYRTEELLAEGKKEIDEVVQSFNDVHVTDKSLIWNTDLVETLELRNLLGCAATTMHSAENRKESRGAHAHENYPDRLDDEWMKHTLAYFDEKEGKTKI 612
BLAST of mRNA_H-elongata_contig57329.13198.1 vs. uniprot
Match: A0A2R5G9I9_9STRA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G9I9_9STRA) HSP 1 Score: 262 bits (670), Expect = 5.680e-81 Identity = 137/209 (65.55%), Postives = 166/209 (79.43%), Query Frame = 1
Query: 1 QVISPKKHADGTMEHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDKVAEAPKSETEKSIASMDRTRFADGPTPVAELRLKLQKEMQDHAAVYRTQESLEEGVRRVDDVVGEFKNINVADKSLIWNTNLIEAMELENLLSNSACTIHAAEARKETRGAHAREDFPDRLDDEWMKHSITYFDYETGKTKV 627
QV++P K + D +VPGL+AAGEAACASVHGANRLGANSLLDIVVFGRACA I + KP KV E P E SIA++D+ R A+G TP A+LRL+LQK MQ+HAAV+RT E L EGV +VD+VV EF +I V D+SLIWN+++IE +EL+NLL N+ACT+HAAEARKE+RGAHA ED+PDR D EWMKH+IT+FD ETGK KV
Sbjct: 399 QVVNPTKD-----DPDRVVPGLYAAGEAACASVHGANRLGANSLLDIVVFGRACANHIGETLKPSKKV-ELPAGAGEDSIANLDKIRNANGSTPTADLRLRLQKTMQNHAAVFRTNEVLAEGVVKVDEVVQEFSDIKVTDRSLIWNSDVIETLELQNLLGNAACTMHAAEARKESRGAHAHEDYPDRNDKEWMKHTITHFDTETGKVKV 601
BLAST of mRNA_H-elongata_contig57329.13198.1 vs. uniprot
Match: F0YDU4_AURAN (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDU4_AURAN) HSP 1 Score: 262 bits (670), Expect = 6.080e-81 Identity = 138/210 (65.71%), Postives = 161/210 (76.67%), Query Frame = 1
Query: 1 QVISPKKHADGTM-EHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDKVAEAPKSETEKSIASMDRTRFADGPTPVAELRLKLQKEMQDHAAVYRTQESLEEGVRRVDDVVGEFKNINVADKSLIWNTNLIEAMELENLLSNSACTIHAAEARKETRGAHAREDFPDRLDDEWMKHSITYFDYETGKTKV 627
+VI DG++ +HD +VPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIA+PG V P EK+IA +D RF+ GP P A++R +QK MQDHAAVYRT ESL EG ++ V F +I V D+SLIWNT+LIE +EL NLL N+A T+ AAEARKE+RGAHARED PDRLDDEWMKH++ YFD T KT V
Sbjct: 395 EVIRQVTGPDGSVIDHDEVVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAEPGAPVPPLPADAAEKTIADVDAIRFSSGPRPTADVRKDMQKTMQDHAAVYRTAESLAEGCEKIQKNVEAFADIGVTDRSLIWNTDLIETIELRNLLPNAATTMFAAEARKESRGAHAREDTPDRLDDEWMKHTMCYFDEATNKTTV 604
BLAST of mRNA_H-elongata_contig57329.13198.1 vs. uniprot
Match: A0A7S2RM10_9STRA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RM10_9STRA) HSP 1 Score: 261 bits (666), Expect = 3.030e-80 Identity = 131/209 (62.68%), Postives = 164/209 (78.47%), Query Frame = 1
Query: 1 QVISPKKHADGTMEHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDKVAEAPKSETEKSIASMDRTRFADGPTPVAELRLKLQKEMQDHAAVYRTQESLEEGVRRVDDVVGEFKNINVADKSLIWNTNLIEAMELENLLSNSACTIHAAEARKETRGAHAREDFPDRLDDEWMKHSITYFDYETGKTKV 627
+VI KK+ADGT +HD+IVPGLFAAGE ACASVHGANRLGANSLLDIVVFGRACA RIA+IAKPG V PK + SIA +D+ R+A G P A LRL++Q+ MQ++AAVYRT E L EG ++D VV +F+++ +D+SLIWNT+LIE +EL NLL N++ T+HAA R E+RGAHARED PDR D+ WMKH++ YFD TG++ V
Sbjct: 407 EVIRVKKNADGTEDHDSIVPGLFAAGEVACASVHGANRLGANSLLDIVVFGRACANRIAEIAKPGAPVPPLPKDAGDASIADLDKLRYAKGDVPTASLRLEMQQVMQENAAVYRTAEVLSEGCEKIDAVVDKFQHVGTSDRSLIWNTDLIETLELRNLLGNASTTMHAASQRTESRGAHAREDTPDRDDENWMKHTMAYFDESTGRSTV 615
BLAST of mRNA_H-elongata_contig57329.13198.1 vs. uniprot
Match: A0A7S4KAF0_9STRA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4KAF0_9STRA) HSP 1 Score: 259 bits (663), Expect = 1.190e-79 Identity = 127/212 (59.91%), Postives = 168/212 (79.25%), Query Frame = 1
Query: 1 QVISPKKHADGTMEHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDKVAEA---PKSETEKSIASMDRTRFADGPTPVAELRLKLQKEMQDHAAVYRTQESLEEGVRRVDDVVGEFKNINVADKSLIWNTNLIEAMELENLLSNSACTIHAAEARKETRGAHAREDFPDRLDDEWMKHSITYFDYETGKTKV 627
+V+ K + G E D +VPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIAD+A PGD + +A P +S+A +D+ R+ADG TP +E+R ++Q MQDHAAVYRT E LEEG ++D+VV F ++ V D+SL+WNT+L+E +EL NLL+N++ T+H+A RKE+RGAHA E++PDR D+EWMKH+++YF+ ETGK++V
Sbjct: 420 EVVRTKFDSKGEFEQDEVVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADLAAPGDDIPDATGGPDGAGMQSLADLDKLRYADGSTPTSEIRGEMQAVMQDHAAVYRTSELLEEGAGKIDEVVQSFADVGVTDRSLVWNTDLVETLELRNLLANASTTMHSANVRKESRGAHAHENYPDRDDNEWMKHTVSYFNEETGKSEV 631 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57329.13198.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig57329.13198.1 >prot_H-elongata_contig57329.13198.1 ID=prot_H-elongata_contig57329.13198.1|Name=mRNA_H-elongata_contig57329.13198.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=217bp QVISPKKHADGTMEHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFback to top mRNA from alignment at H-elongata_contig57329:425..3610+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig57329.13198.1 ID=mRNA_H-elongata_contig57329.13198.1|Name=mRNA_H-elongata_contig57329.13198.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3186bp|location=Sequence derived from alignment at H-elongata_contig57329:425..3610+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig57329:425..3610+ >mRNA_H-elongata_contig57329.13198.1 ID=mRNA_H-elongata_contig57329.13198.1|Name=mRNA_H-elongata_contig57329.13198.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1302bp|location=Sequence derived from alignment at H-elongata_contig57329:425..3610+ (Himanthalia elongata Himel1 dioecious)back to top |