mRNA_H-elongata_contig57238.13187.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig57238.13187.1 vs. uniprot
Match: A0A6I8SNZ1_XENTR (ATP-dependent DNA helicase n=2 Tax=Xenopus tropicalis TaxID=8364 RepID=A0A6I8SNZ1_XENTR) HSP 1 Score: 140 bits (352), Expect = 4.930e-35 Identity = 80/196 (40.82%), Postives = 115/196 (58.67%), Query Frame = 1
Query: 1 LLDHQPQRTAVDSRSCRSLTGGLPEHNWARDDLEWSQPVVDLLRSTFGIKSWRSSQKKIVNATLSDRDVFVVMCTGGGKSLCYQLPAFLRGSITVVVSPLISLIEDQTRYLNSLIMRGQPVEGDMIDGTKLVMMLVNPEKGARPRQVLVSAQRLLWSTSYGVVKSKMFMEVLDKTAKNGPLAKVVVGEAHCCSQVG 588
LL+ + QR + DS S GG NW ++D WSQ + D L ++F ++S+RS Q + +NAT++ RDVF++M TGGGKSLCYQLPA T+V+ PL+SL+EDQ L+ L G +K + V+ E + ++ +LL+ T + KSK+FM L+K + G LA+V V E HCCSQ G
Sbjct: 43 LLNKKIQRLSEDSGPGTSAGGGDSAENWQKEDFLWSQKIRDALCNSFQLRSFRSLQLETINATMAGRDVFLIMPTGGGKSLCYQLPAVCSDGFTLVICPLVSLMEDQLMVLDRL---GVSATSLNASSSKEHVKWVHGEMTNKNSRL-----KLLYVTPEKIAKSKLFMSRLEKAYQAGLLARVAVDEVHCCSQWG 230
BLAST of mRNA_H-elongata_contig57238.13187.1 vs. uniprot
Match: Q32NN1_XENLA (ATP-dependent DNA helicase n=2 Tax=Xenopus laevis TaxID=8355 RepID=Q32NN1_XENLA) HSP 1 Score: 139 bits (349), Expect = 1.270e-34 Identity = 81/196 (41.33%), Postives = 113/196 (57.65%), Query Frame = 1
Query: 1 LLDHQPQRTAVDSRSCRSLTGGLPEHNWARDDLEWSQPVVDLLRSTFGIKSWRSSQKKIVNATLSDRDVFVVMCTGGGKSLCYQLPAFLRGSITVVVSPLISLIEDQTRYLNSLIMRGQPVEGDMIDGTKLVMMLVNPEKGARPRQVLVSAQRLLWSTSYGVVKSKMFMEVLDKTAKNGPLAKVVVGEAHCCSQVG 588
LL+ + QR + ++ + S GG NW +D WSQ + L +F ++++RS Q + +NAT+S RDVF++M TGGGKSLCYQLPA T+V+ PLISL+EDQ LN L G +K + V+ E + Q+ +LL+ T V KSK+FM L+K + G LA+V V E HCCSQ G
Sbjct: 43 LLNKKIQRLSENAEAGSSAGGGDCAENWRNEDFLWSQKIRRALSDSFQLQTFRSLQLETINATMSGRDVFLIMPTGGGKSLCYQLPALCSDGFTLVICPLISLMEDQLMVLNRL---GVSATSLNASSSKEHVKWVHGEMMNKKSQL-----KLLYVTPEKVAKSKVFMSRLEKAYQGGLLARVAVDEVHCCSQWG 230
BLAST of mRNA_H-elongata_contig57238.13187.1 vs. uniprot
Match: A0A0E9N870_SAICN (ATP-dependent DNA helicase n=1 Tax=Saitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804) TaxID=698492 RepID=A0A0E9N870_SAICN) HSP 1 Score: 137 bits (346), Expect = 4.070e-34 Identity = 81/212 (38.21%), Postives = 121/212 (57.08%), Query Frame = 1
Query: 1 LLDHQPQRTAVDSRSCRSLTGGLPEHNWARDDLEWSQPVVDLLRSTFGIKSWRSSQKKIVNATLSDRDVFVVMCTGGGKSLCYQLPAFLRGSITVVVSPLISLIEDQTRYLNSLIMRGQPV---------EGDMIDGTKLVMMLVNPEKGARPRQVL-------VSAQRLLWSTSYGVVKSKMFMEVLDKTAKNGPLAKVVVGEAHCCSQVG 588
LLD Q A ++R + N+A ++ WSQ + +L ++TFGI S+RS Q +++NATL +D F +M TG GKSLCYQLPA + +TVV+SPL+SLI+DQ L + RG + ++ D T + + + P+ R + L V A +L++ T + KSK FM +LD+ A+ G LA++V+ EAHC SQ G
Sbjct: 64 LLDAADQAKAEETRV------SAKQRNYASENFPWSQRLRELAKNTFGITSFRSKQLEVMNATLDQKDAFCIMATGSGKSLCYQLPALISPGLTVVISPLVSLIQDQVLELKA---RGVTAVAGLSAGTDKDELKDATASMRLHLLPKSKKRKHEDLNEDVTEPVDALKLVYVTPERISKSKRFMSLLDQLAQVGRLARIVIDEAHCASQYG 266
BLAST of mRNA_H-elongata_contig57238.13187.1 vs. uniprot
Match: A0A7R9MH80_9ACAR (Hypothetical protein (Fragment) n=1 Tax=Oppiella nova TaxID=334625 RepID=A0A7R9MH80_9ACAR) HSP 1 Score: 127 bits (319), Expect = 6.510e-33 Identity = 72/171 (42.11%), Postives = 99/171 (57.89%), Query Frame = 1
Query: 82 WARDDLEWSQPVVDLLRSTFGIKSWRSSQKKIVNATLSDRDVFVVMCTGGGKSLCYQLPAFLRGSITVVVSPLISLIEDQTRYLNSLIMRGQPVEGDMI--DGTKLVMMLVNPEKGARPRQVLVSAQRLLWSTSYGVVKSKMFMEVLDKTAKNGPLAKVVVGEAHCCSQVG 588
+A D +WSQ V LL + FG K +RS Q +NATLS D +VM TGGGKSLC+QLPA + +T+VVSPLISL+EDQ L L + V G + +++ + +P S ++++ T + KSK FM L+K +NG L +VV+ E HCCSQ G
Sbjct: 57 FATDSYDWSQKVHKLLETVFGHKKFRSYQLMAINATLSATDCLLVMPTGGGKSLCFQLPALVNNGLTLVVSPLISLMEDQVNGLKELRIPTAVVSGQTTREENNRVLQAIADPS----------SDLKIVYVTPEKMAKSKRFMSQLEKCYRNGRLDRVVIDEVHCCSQWG 217
BLAST of mRNA_H-elongata_contig57238.13187.1 vs. uniprot
Match: A0A6I9XTF9_9SAUR (ATP-dependent DNA helicase Q1-like n=1 Tax=Thamnophis sirtalis TaxID=35019 RepID=A0A6I9XTF9_9SAUR) HSP 1 Score: 127 bits (320), Expect = 7.770e-33 Identity = 77/207 (37.20%), Postives = 111/207 (53.62%), Query Frame = 1
Query: 4 LDHQPQ------------RTAVDSRSCRSLTGGLPEHNWARDDLEWSQPVVDLLRSTFGIKSWRSSQKKIVNATLSDRDVFVVMCTGGGKSLCYQLPAFLRGSITVVVSPLISLIEDQTRYLNSLIMRGQPVEGDMIDGTKLVMMLVNPEKGARPRQVLVSAQRLLWSTSYGVVKSKMFMEVLDKTAKNGPLAKVVVGEAHCCSQVG 588
L+HQ Q R D+ S S +W ++D WS + +L+ +FG++ +R Q + +NAT++ RDVF+VM TGGGKSLCYQLPA T+V+ PLISL+EDQ L L + + +K + V+ E +R Q+ +LL+ T + KSKMFM L+K + G L ++ V E HCCSQ G
Sbjct: 30 LEHQQQLIQKKATLKKKIRQFSDTESGSSKEADSATEDWKKEDFPWSTKIRAVLQKSFGLQEFRPLQLETINATMAGRDVFLVMPTGGGKSLCYQLPAEGSQGFTLVICPLISLMEDQLMMLEQLGISATLLNAS---SSKEHVKWVHGEMLSRNSQL-----KLLYVTPEKIAKSKMFMSKLEKAYQTGQLTRIAVDEVHCCSQWG 228
BLAST of mRNA_H-elongata_contig57238.13187.1 vs. uniprot
Match: A0A2G8JKU5_STIJA (ATP-dependent DNA helicase (Fragment) n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8JKU5_STIJA) HSP 1 Score: 133 bits (334), Expect = 8.490e-33 Identity = 77/185 (41.62%), Postives = 111/185 (60.00%), Query Frame = 1
Query: 40 RSCRSLTGGLPEHNWARDDLEWSQPVVDLLRSTFGIKSWRSSQKKIVNATLSDRDVFVVMCTGGGKSLCYQLPAFLRGSITVVVSPLISLIEDQTRYLNSLIMRGQPVEGDMI-DGTKLVMM-LVNPEKGARPRQVLVSAQRLLWSTSYGVVKSKMFMEVLDKTAKNGPLAKVVVGEAHCCSQVG 588
RSC+ LP+ ++ D +WSQ + +L S FGI+S+R Q++++NAT+S DV ++M TGGGKSLC+QLPA L IT+VVSPL+SL+EDQ L L + + D K+V+ +VNP+ + +LL+ T + KSK FM L K G L+++V+ E HCCSQ G
Sbjct: 62 RSCQ-----LPDVDFKCSDFQWSQELHNLKTSMFGIESFRPYQEEVINATMSKHDVILIMPTGGGKSLCFQLPALLSEGITLVVSPLVSLMEDQAMTLQDLGIAATLLSASTSRDHLKVVLQDMVNPK----------AKLKLLYVTPEKIAKSKRFMAQLQKAYDKGMLSRIVIDEVHCCSQWG 231
BLAST of mRNA_H-elongata_contig57238.13187.1 vs. uniprot
Match: UPI001CF25EA0 (ATP-dependent DNA helicase Q1 n=2 Tax=Bufo TaxID=8383 RepID=UPI001CF25EA0) HSP 1 Score: 132 bits (332), Expect = 2.880e-32 Identity = 75/203 (36.95%), Postives = 110/203 (54.19%), Query Frame = 1
Query: 19 QRTAVDSRSCRSLTGGLPEHNWARDDLEWSQPVVDLLRSTFGIKSWRSSQKKIVNATLSDRDVFVVMCTGGGKSLCYQLPAFLRGSITVVVSPLISLIEDQTRYLNSLIMRGQP------------VEGDMID-GTKLVMMLVNPEKGARPRQVLVSAQRLLWSTSYGVVKSKMFMEVLDKTAKNGPLAKVVVGEAHCCSQVG 588
QR + D+ + S NW R D WSQ V + L+++F + ++R+ Q + +NAT++ +DVF++M TGGGKSLCYQLPA T+V+ PL+SL+EDQ L L + G V G+MID ++L ++ V PEK + KSK+FM L+K + G LA++ + E HCCSQ G
Sbjct: 49 QRLSEDAEAGTSAEAESSSENWNRQDFSWSQKVKEELQNSFQLDTFRNLQLETINATMAGKDVFLIMPTGGGKSLCYQLPAVCSKGFTLVICPLVSLMEDQHMVLKRLGVSGTSLNAASSKDHVKWVHGEMIDKNSQLKLLYVTPEK---------------------IAKSKLFMSRLEKAYQAGRLARIAIDEVHCCSQWG 230
BLAST of mRNA_H-elongata_contig57238.13187.1 vs. uniprot
Match: UPI000EAA76CB (ATP-dependent DNA helicase Q1 isoform X3 n=1 Tax=Pseudonaja textilis TaxID=8673 RepID=UPI000EAA76CB) HSP 1 Score: 130 bits (328), Expect = 4.960e-32 Identity = 79/210 (37.62%), Postives = 116/210 (55.24%), Query Frame = 1
Query: 1 LLDHQPQ------------RTAVDSRSCRSLTGGLPEHNWARDDLEWSQPVVDLLRSTFGIKSWRSSQKKIVNATLSDRDVFVVMCTGGGKSLCYQLPAFLRGSITVVVSPLISLIEDQTRYLNSLIMRGQPVEGDMIDGT--KLVMMLVNPEKGARPRQVLVSAQRLLWSTSYGVVKSKMFMEVLDKTAKNGPLAKVVVGEAHCCSQVG 588
LL+HQ Q + D++S S +W ++D WS + D+L+ +FG++ +R Q + +NAT++ RDVF+VM TGGGKSLCYQLPA T+V+ PLISL+EDQ L L V +++ + K + V+ E +R Q+ +LL+ T + KSKMFM L+K + G L ++ V E HCCSQ G
Sbjct: 29 LLEHQQQLIQKKTILKKKIKQFSDTKSGSSKETESATEDWNKEDFPWSAKIRDVLQKSFGLQKFRPLQLEAINATMAGRDVFLVMPTGGGKSLCYQLPAEGSQGFTLVICPLISLMEDQLMMLEQL-----GVSATLLNASSSKEHVKWVHAEMLSRNSQL-----KLLYVTPEKIAKSKMFMSKLEKAYQTGQLTRIAVDEVHCCSQWG 228
BLAST of mRNA_H-elongata_contig57238.13187.1 vs. uniprot
Match: A0A670XUU8_PSETE (ATP-dependent DNA helicase n=2 Tax=Pseudonaja textilis TaxID=8673 RepID=A0A670XUU8_PSETE) HSP 1 Score: 130 bits (328), Expect = 1.030e-31 Identity = 79/210 (37.62%), Postives = 116/210 (55.24%), Query Frame = 1
Query: 1 LLDHQPQ------------RTAVDSRSCRSLTGGLPEHNWARDDLEWSQPVVDLLRSTFGIKSWRSSQKKIVNATLSDRDVFVVMCTGGGKSLCYQLPAFLRGSITVVVSPLISLIEDQTRYLNSLIMRGQPVEGDMIDGT--KLVMMLVNPEKGARPRQVLVSAQRLLWSTSYGVVKSKMFMEVLDKTAKNGPLAKVVVGEAHCCSQVG 588
LL+HQ Q + D++S S +W ++D WS + D+L+ +FG++ +R Q + +NAT++ RDVF+VM TGGGKSLCYQLPA T+V+ PLISL+EDQ L L V +++ + K + V+ E +R Q+ +LL+ T + KSKMFM L+K + G L ++ V E HCCSQ G
Sbjct: 28 LLEHQQQLIQKKTILKKKIKQFSDTKSGSSKETESATEDWNKEDFPWSAKIRDVLQKSFGLQKFRPLQLEAINATMAGRDVFLVMPTGGGKSLCYQLPAEGSQGFTLVICPLISLMEDQLMMLEQL-----GVSATLLNASSSKEHVKWVHAEMLSRNSQL-----KLLYVTPEKIAKSKMFMSKLEKAYQTGQLTRIAVDEVHCCSQWG 227
BLAST of mRNA_H-elongata_contig57238.13187.1 vs. uniprot
Match: A0A670XXC0_PSETE (ATP-dependent DNA helicase n=9 Tax=Elapidae TaxID=8602 RepID=A0A670XXC0_PSETE) HSP 1 Score: 130 bits (328), Expect = 1.040e-31 Identity = 79/210 (37.62%), Postives = 116/210 (55.24%), Query Frame = 1
Query: 1 LLDHQPQ------------RTAVDSRSCRSLTGGLPEHNWARDDLEWSQPVVDLLRSTFGIKSWRSSQKKIVNATLSDRDVFVVMCTGGGKSLCYQLPAFLRGSITVVVSPLISLIEDQTRYLNSLIMRGQPVEGDMIDGT--KLVMMLVNPEKGARPRQVLVSAQRLLWSTSYGVVKSKMFMEVLDKTAKNGPLAKVVVGEAHCCSQVG 588
LL+HQ Q + D++S S +W ++D WS + D+L+ +FG++ +R Q + +NAT++ RDVF+VM TGGGKSLCYQLPA T+V+ PLISL+EDQ L L V +++ + K + V+ E +R Q+ +LL+ T + KSKMFM L+K + G L ++ V E HCCSQ G
Sbjct: 30 LLEHQQQLIQKKTILKKKIKQFSDTKSGSSKETESATEDWNKEDFPWSAKIRDVLQKSFGLQKFRPLQLEAINATMAGRDVFLVMPTGGGKSLCYQLPAEGSQGFTLVICPLISLMEDQLMMLEQL-----GVSATLLNASSSKEHVKWVHAEMLSRNSQL-----KLLYVTPEKIAKSKMFMSKLEKAYQTGQLTRIAVDEVHCCSQWG 229 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57238.13187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig57238.13187.1 >prot_H-elongata_contig57238.13187.1 ID=prot_H-elongata_contig57238.13187.1|Name=mRNA_H-elongata_contig57238.13187.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=203bp LLDHQPQRTAVDSRSCRSLTGGLPEHNWARDDLEWSQPVVDLLRSTFGIKback to top mRNA from alignment at H-elongata_contig57238:2534..3706+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig57238.13187.1 ID=mRNA_H-elongata_contig57238.13187.1|Name=mRNA_H-elongata_contig57238.13187.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1173bp|location=Sequence derived from alignment at H-elongata_contig57238:2534..3706+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig57238:2534..3706+ >mRNA_H-elongata_contig57238.13187.1 ID=mRNA_H-elongata_contig57238.13187.1|Name=mRNA_H-elongata_contig57238.13187.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1218bp|location=Sequence derived from alignment at H-elongata_contig57238:2534..3706+ (Himanthalia elongata Himel1 dioecious)back to top |