mRNA_H-elongata_contig57159.13170.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57159.13170.1
Unique NamemRNA_H-elongata_contig57159.13170.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig57159.13170.1 vs. uniprot
Match: D8LHJ5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHJ5_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 5.390e-28
Identity = 83/193 (43.01%), Postives = 102/193 (52.85%), Query Frame = 1 
Query:  154 VFGEYHEGALWPAYLTHWTYALQTVYFFLALGSSAHLLANSGRKRR-------EDDGTGWRDVDRRGGGNRPGRPKSRGGGVGSTEASSSSSFSFAARE-----SGAGTHESTGGRTIVRTSVTEARVGAKFQLCTFDAKVRGGRSIRELALERLRKLQWGLLLVSADTAIIVTCVYWAFDYNGWIDQLNLQV 696
            VFG  H    W  YLTHWT+ALQT+Y+FLALGS+ HL  NSGRKRR        + G G R+++  GGG     P  +G GVG     S+   S   RE     + A       G  + + +     V                 +   +ALER RKLQWGLL+V AD+AIIVT VYW F YNGW DQLNLQ+
Sbjct:    3 VFGNAH----WLLYLTHWTFALQTLYYFLALGSAIHLWLNSGRKRRAGWLWSSREIGGGGRELEGVGGG-----PAIKGRGVGRAGNDSARDRSKEKREGLGRSAAAAVDAGKEGLPLPKPAGXXXXVXXXXXXXXXXXXXXXXXNGEHIALERWRKLQWGLLIVCADSAIIVTGVYWTFLYNGWTDQLNLQI 186
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57159.13170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LHJ5_ECTSI5.390e-2843.01Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57159contigH-elongata_contig57159:274..3210 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.3
Seed ortholog evalue5.9e-25
Seed eggNOG ortholog2880.D8LHJ5
EggNOG OGs2E7FU@1,2SE1W@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-10_002130.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons6
Model size696
Cds size696
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57159.13170.1prot_H-elongata_contig57159.13170.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57159 274..3210 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930928.063484-CDS-H-elongata_contig57159:273..4021622930928.063484-CDS-H-elongata_contig57159:273..402Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57159 274..402 -
1691679628.4605672-CDS-H-elongata_contig57159:273..4021691679628.4605672-CDS-H-elongata_contig57159:273..402Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57159 274..402 -
1622930928.0919676-CDS-H-elongata_contig57159:628..7071622930928.0919676-CDS-H-elongata_contig57159:628..707Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57159 629..707 -
1691679628.4725196-CDS-H-elongata_contig57159:628..7071691679628.4725196-CDS-H-elongata_contig57159:628..707Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57159 629..707 -
1622930928.1083913-CDS-H-elongata_contig57159:1020..12941622930928.1083913-CDS-H-elongata_contig57159:1020..1294Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57159 1021..1294 -
1691679628.4828475-CDS-H-elongata_contig57159:1020..12941691679628.4828475-CDS-H-elongata_contig57159:1020..1294Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57159 1021..1294 -
1622930928.146997-CDS-H-elongata_contig57159:1696..17211622930928.146997-CDS-H-elongata_contig57159:1696..1721Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57159 1697..1721 -
1691679628.4923866-CDS-H-elongata_contig57159:1696..17211691679628.4923866-CDS-H-elongata_contig57159:1696..1721Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57159 1697..1721 -
1622930928.1735895-CDS-H-elongata_contig57159:2067..22301622930928.1735895-CDS-H-elongata_contig57159:2067..2230Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57159 2068..2230 -
1691679628.5050173-CDS-H-elongata_contig57159:2067..22301691679628.5050173-CDS-H-elongata_contig57159:2067..2230Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57159 2068..2230 -
1622930928.1996462-CDS-H-elongata_contig57159:3184..32101622930928.1996462-CDS-H-elongata_contig57159:3184..3210Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57159 3185..3210 -
1691679628.5132482-CDS-H-elongata_contig57159:3184..32101691679628.5132482-CDS-H-elongata_contig57159:3184..3210Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57159 3185..3210 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57159.13170.1

>prot_H-elongata_contig57159.13170.1 ID=prot_H-elongata_contig57159.13170.1|Name=mRNA_H-elongata_contig57159.13170.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=232bp
MPVCGVPCSLSLKDHSPELFGSSRLLPQKPYVMVRACLAFNSLYWLVRSV
RVFGEYHEGALWPAYLTHWTYALQTVYFFLALGSSAHLLANSGRKRREDD
GTGWRDVDRRGGGNRPGRPKSRGGGVGSTEASSSSSFSFAARESGAGTHE
STGGRTIVRTSVTEARVGAKFQLCTFDAKVRGGRSIRELALERLRKLQWG
LLLVSADTAIIVTCVYWAFDYNGWIDQLNLQV
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mRNA from alignment at H-elongata_contig57159:274..3210-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57159.13170.1 ID=mRNA_H-elongata_contig57159.13170.1|Name=mRNA_H-elongata_contig57159.13170.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2937bp|location=Sequence derived from alignment at H-elongata_contig57159:274..3210- (Himanthalia elongata Himel1 dioecious)
ATGCCTGTCTGCGGAGTGCCTTGCAGGTGAACAACTGCGGCCATCCTCTC
AATTTAACGGTGTATTTCCCATTTTTGATTAAGAGTGGTGGTGCCATAAT
GTTTACGTCAATGCAGAGGTAGCGAAGCTGATGTAATTCCGGCGTGATTT
CTAGTGGATGGACCCCTCCAAATCTAGAGGTGATGTTTCCTTGTTCTGAC
TGCGCCGCGTCTTGAGCCTGCTGTGTGATGATGCAACACGTGCACGAGGG
TAATATGTGCTTTTGGACAGCGCCTATAATGTCTGCTTCAGAGCTTGAAG
CTCATATTGAGCGTTTCGCGCTCAGTCACCCCGATGATTTAAAAAAGTCT
TCGTCTAGTTACTAATCTACTGGTGACATTTCTTCGCTTGTGCCTCGAAT
CAGCCGCGTCCTCTCACGAAACCGAATATTTCGAAGCGGGCCGTATGCTT
GTGGTATGCTCGCGCGGTCGCTCAAATCTCGATTCTGTGCCATGACTCTC
GTACACGCTTTATTTCCGTGTAGATATCCGAACAGTCACTCTTCTTGTCG
TGGATCCGGTCGCACCCTCTCTCTTACCTCTTTGCACTCGATAAAGCTCC
GTCCTCCCTGTATCGCCCAACTCTTGGCTGTTCGAATACCCCGTTAGACT
GCACATTTTGCTCGCAACCTGTACGGTCTGTGCTGTGCCCATGAAGTGCA
CATACTAAAACATATGTTACAAAAAATATACTTCGTATATACTACCACTT
ATCAACAACATGGATGTGGGTAGCCCTATTCCATCCGCCGTTGACCTTTC
AAATATATATATATATATTTAAGAGAGGAATCACTTCCACTGCCTCTCAT
GGTATAATCCTCCCGTTGCACCCCTTTCGTACTCAGCATCCCCCAGCGCT
GTCCCCCGCCCCCCGCGGGATTCCTGCTTGTCCCACCTCCCTTCGCGCTT
CCCTTGCCATCCGACCGTTTTCCCAAGCAGCCTCTCGTTGAAGGACCACA
GCCCGGAGCTTTTCGGATCGTCCCGCCTCCTCCCCCAGAAGCCTTATGTC
ATGGTTCGCGCTTGCCTGGCTTTTAACAGCCTCTATTGGCTTGTTCGCTC
CGTCCGGGTGTTTGGCGAATACCATGAAGGAGCCTTGTGGCCCGTGAGTA
CCGCACCGTAGCTGGCAGTATATGCACCATACCTCCGGTGGGAAAATACC
ACAGCCCAAGGAGAAGCGCCACGGTGGTTTAGAGGGCCAGCAAACTCTTT
TTGCAAGGAACAATAAACAGGGTACGAGTGCTCTCTACTGAAGCGTCGCG
GATGGATTGATGGGGAGGCGTTATGCTGCCCTCAATCCCTCTGCCGCCTT
AAATACACGCGTAACGAAATCATCCTAATAATAATGGAGTAGAGAATCTG
CCTTTGCTGTTGCTGCCAGCCAACGCCCATCACCCCTCTCCCCTTCTGTG
TTTTCTTTTCTATGCCGGGCCATTAATCGCCGTCTCCAGGCGTACCTAAC
CCACTGGACTTACGGTAAGACACCGCCGTTGCGGAGAGGACTCGGTCGTT
CGAATGAGGTTTCTCGTGGCGACAATATCGACTTATAATATGTATAACGC
CTGCAGGGCCGTTTGTAGAACTTGAATCTTGAATCGGCGGGCATCGATCC
CACAGACAATAGTTATTCTTAAGAGCTTCATATGTCTCGATCTCGTTACG
AGATCCCCTCCCCCTCCCCCTTCGGCGAACACGAACACGAACACAGGAAG
TCTGCATGCCTCTGCGCACCCTGAAGAGAAAGAAGACGGCGTTCCCGCCT
TTGCATGGCGCCGCGTTCTTCTAGAAAAAGCCGTGCCCTACCTTCGCAGG
CGACGAAGGTCTCACGTCGCCCCCTCTCCCACATACACGCCTCCTCTGGT
ATGTTGCGTCGCGCAGCCTTGCAAACCGTGTATTTTTTTCTGGCGCTGGG
ATCGTCGGCGCACCTCCTGGCGAACAGCGGGCGTAAGCGGCGCGAAGACG
ATGGAACGGGGTGGAGAGACGTAGACAGACGAGGCGGCGGAAACAGGCCG
GGTCGCCCGAAGTCCAGGGGCGGCGGAGTTGGATCAACGGAAGCGTCCTC
CTCGTCATCTTTCTCTTTCGCCGCGCGCGAGTCGGGGGCGGGAACGCACG
AAAGCACAGGCGGCAGAACAATCGTAAGAACAAGCGTTACGTACGCCGTG
AAAATAAAACAAGCTGCCCCTCCCAACAGCTGCACCACCACTCTGTAGGA
GCACTCTAGTAAAGTGTAAACAGTTAGTGGTTTTAAAGACGAAAATATCG
CGATTGCAGTGCTGTTTTTGTTGTTGTTTTGTTGTTTCCTCCTCTTTTGT
TCAAAGTAGAGTAATCTCGTAGAGTGTGCGTGCTCTTATGTCACCGAAGT
TGCTGTGTTTTTTTTGTTTTTTATTTTGTTTTTAAGCTGAACTCGTTCAA
GCCGTAATTTCCTTCGCCCTCACGATGATGAAGTCGCGCGCGCGGTTGGA
TAGCGAAGCACGCGTCGGGGCAAAGTTCCAGCTTTGTACCTTTGACGCAA
AAGTACGAGGAGGGCGATCCATAAGGGAGTTGGTCTGGGGAATGATTCAC
AAAATCTGAGCAAAATATTTGGTCGGGGACTCGAGTCTAGCGACCAGCTT
GGACTTACTCTCGATCTCAACCGCTGGTGAAGAACGGAAGGGTTAGGGAG
AACGGATACTGGAATTTTCCTCTATGGCGCCAGTCCCATCGCTCATGCGC
GGGAAACACCGCCTCACTTTCTCCTCGAACCCCGACGAATTAATTCGAGG
AAACCCAGGCACTCGAGCGTCTACGAAAGCTGCAGTGGGGCCTGCTGCTC
GTGTCCGCCGACACTGCAATTATCGTTACCTGCGTGTACTGGGCGTTTGA
CTACAATGGGTGGATCGACCAGCTCAACCTGCAGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig57159:274..3210-

>mRNA_H-elongata_contig57159.13170.1 ID=mRNA_H-elongata_contig57159.13170.1|Name=mRNA_H-elongata_contig57159.13170.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1392bp|location=Sequence derived from alignment at H-elongata_contig57159:274..3210- (Himanthalia elongata Himel1 dioecious)
ATGCCTGTCTGCGGAGTGCCTTGCAGATGCCTGTCTGCGGAGTGCCTTGC
AGCCTCTCGTTGAAGGACCACAGCCCGGAGCTTTTCGGATCGTCCCGCCT
CCTCCCCCAGAAGCCTTATGTCATGGTTCGCGCTTGCCTGGCTTTTAACA
GCCTCTATTGGCTTGTTCGCTCCGTCCGGGTGTTTGGCGAATACCATGAA
GGAGCCTTGTGGCCCCCTCTCGTTGAAGGACCACAGCCCGGAGCTTTTCG
GATCGTCCCGCCTCCTCCCCCAGAAGCCTTATGTCATGGTTCGCGCTTGC
CTGGCTTTTAACAGCCTCTATTGGCTTGTTCGCTCCGTCCGGGTGTTTGG
CGAATACCATGAAGGAGCCTTGTGGCCCGCGTACCTAACCCACTGGACTT
ACGGCGTACCTAACCCACTGGACTTACGCCTTGCAAACCGTGTATTTTTT
TCTGGCGCTGGGATCGTCGGCGCACCTCCTGGCGAACAGCGGGCGTAAGC
GGCGCGAAGACGATGGAACGGGGTGGAGAGACGTAGACAGACGAGGCGGC
GGAAACAGGCCGGGTCGCCCGAAGTCCAGGGGCGGCGGAGTTGGATCAAC
GGAAGCGTCCTCCTCGTCATCTTTCTCTTTCGCCGCGCGCGAGTCGGGGG
CGGGAACGCACGAAAGCACAGGCGGCAGAACAATCGTAAGAACAAGCGTT
ACCCTTGCAAACCGTGTATTTTTTTCTGGCGCTGGGATCGTCGGCGCACC
TCCTGGCGAACAGCGGGCGTAAGCGGCGCGAAGACGATGGAACGGGGTGG
AGAGACGTAGACAGACGAGGCGGCGGAAACAGGCCGGGTCGCCCGAAGTC
CAGGGGCGGCGGAGTTGGATCAACGGAAGCGTCCTCCTCGTCATCTTTCT
CTTTCGCCGCGCGCGAGTCGGGGGCGGGAACGCACGAAAGCACAGGCGGC
AGAACAATCGTAAGAACAAGCGTTACCGAAGCACGCGTCGGGGCAAAGTT
CCAGCTTTGTACCTTTGACGCAAAAGTACGAGGAGGGCGATCCATAAGGG
AGTTGCGAAGCACGCGTCGGGGCAAAGTTCCAGCTTTGTACCTTTGACGC
AAAAGTACGAGGAGGGCGATCCATAAGGGAGTTGGCACTCGAGCGTCTAC
GAAAGCTGCAGTGGGGCCTGCTGCTCGTGTCCGCCGACACTGCAATTATC
GTTACCTGCGTGTACTGGGCGTTTGACTACAATGGGTGGATCGACCAGCT
CAACCTGCAGGTAGCACTCGAGCGTCTACGAAAGCTGCAGTGGGGCCTGC
TGCTCGTGTCCGCCGACACTGCAATTATCGTTACCTGCGTGTACTGGGCG
TTTGACTACAATGGGTGGATCGACCAGCTCAACCTGCAGGTA
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