prot_H-elongata_contig57159.13170.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig57159.13170.1
Unique Name	prot_H-elongata_contig57159.13170.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	232

Homology

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BLAST of mRNA_H-elongata_contig57159.13170.1 vs. uniprot
Match: D8LHJ5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHJ5_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 5.390e-28
Identity = 83/193 (43.01%), Postives = 102/193 (52.85%), Query Frame = 0

Query:   52 VFGEYHEGALWPAYLTHWTYALQTVYFFLALGSSAHLLANSGRKRR-------EDDGTGWRDVDRRGGGNRPGRPKSRGGGVGSTEASSSSSFSFAARE-----SGAGTHESTGGRTIVRTSVTEARVGAKFQLCTFDAKVRGGRSIRELALERLRKLQWGLLLVSADTAIIVTCVYWAFDYNGWIDQLNLQV 232
            VFG  H    W  YLTHWT+ALQT+Y+FLALGS+ HL  NSGRKRR        + G G R+++  GGG     P  +G GVG     S+   S   RE     + A       G  + + +     V                 +   +ALER RKLQWGLL+V AD+AIIVT VYW F YNGW DQLNLQ+
Sbjct:    3 VFGNAH----WLLYLTHWTFALQTLYYFLALGSAIHLWLNSGRKRRAGWLWSSREIGGGGRELEGVGGG-----PAIKGRGVGRAGNDSARDRSKEKREGLGRSAAAAVDAGKEGLPLPKPAGXXXXVXXXXXXXXXXXXXXXXXNGEHIALERWRKLQWGLLIVCADSAIIVTGVYWTFLYNGWTDQLNLQI 186

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig57159.13170.1 vs. uniprot

BLAST of mRNA_H-elongata_contig57159.13170.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D8LHJ5_ECTSI	5.390e-28	43.01	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR12242	UNCHARACTERIZED	coord: 23..225
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 220..232
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 91..198
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 71..90
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 52..70
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..31
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 32..51
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 199..219
None	No IPR available	TMHMM	TMhelix		coord: 67..89
None	No IPR available	TMHMM	TMhelix		coord: 197..219

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig57159	contig	H-elongata_contig57159:274..3210 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig57159.13170.1	mRNA_H-elongata_contig57159.13170.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig57159 274..3210 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig57159.13170.1 ID=prot_H-elongata_contig57159.13170.1|Name=mRNA_H-elongata_contig57159.13170.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=232bp
MPVCGVPCSLSLKDHSPELFGSSRLLPQKPYVMVRACLAFNSLYWLVRSV
RVFGEYHEGALWPAYLTHWTYALQTVYFFLALGSSAHLLANSGRKRREDD
GTGWRDVDRRGGGNRPGRPKSRGGGVGSTEASSSSSFSFAARESGAGTHE
STGGRTIVRTSVTEARVGAKFQLCTFDAKVRGGRSIRELALERLRKLQWG
LLLVSADTAIIVTCVYWAFDYNGWIDQLNLQV