mRNA_H-elongata_contig57110.13165.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig57110.13165.1 vs. uniprot
Match: D7G961_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G961_ECTSI) HSP 1 Score: 285 bits (730), Expect = 1.350e-86 Identity = 139/262 (53.05%), Postives = 182/262 (69.47%), Query Frame = 1
Query: 1 TRDSEEVLLETSERPEFYHNAGWLGFKPGDYGNNLPEICSIGFRNIWRCGFDRLTDELYCGDVGQDYIESIYKVECGNNYGWKRFEGSRCTEYSED-EYGS-CADTDRSDFTFPIFEYCHYDYYVTSPTQDDYTGDNDICGDGSLLGNTVIGGYVYRGQAYADLIYGAYVFADYTARNILYITQEDDGTWTKGSIISDGSMGAFSFSEDVDGELFIIDESNEIYYLPCGDLCSEPETIPTDDDTVTYTYLGCYVDDA-DRVL 777
TR +EEVLL T + H+AGWLGFKP YG+ EIC+IG RN WRC FDRL D+LYCGDVGQ +E I +ECGNNYGW RFEGSRC E +D E+ C DRSDFT+P+FEYCH D+ T + ++TG D CG+ ++GN VIGGYVYRG ++DL+ GAY+F D T RNI ++ +E+DG W G+I+SD S+ SF+EDV+GE+ ++D +++IY++PCGDLC + +D Y LGC+ DD DR L
Sbjct: 256 TRATEEVLLTTVPKYNSVHSAGWLGFKPSVYGS--AEICAIGLRNPWRCSFDRLNDDLYCGDVGQISVEEINFIECGNNYGWSRFEGSRCQEAVQDNEFNPPCDGVDRSDFTYPLFEYCHPDFDSTDADEQEFTGGADTCGNRFVVGNCVIGGYVYRGNFFSDLLDGAYIFGDSTMRNIYFLKEEEDG-WAVGTIVSDASVQIISFAEDVNGEIVLLDYNHDIYHMPCGDLCVTT-CLDQAEDQPAYESLGCFADDVNDRAL 513
BLAST of mRNA_H-elongata_contig57110.13165.1 vs. uniprot
Match: A0A6H5KT40_9PHAE (GSDH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT40_9PHAE) HSP 1 Score: 264 bits (674), Expect = 1.100e-82 Identity = 130/271 (47.97%), Postives = 167/271 (61.62%), Query Frame = 1
Query: 1 TRDSEEVLLETSERPEFYHNAGWLGFKPGDYGNNLP--------------------------------------EICSIGFRNIWRCGFDRLTDELYCGDVGQDYIESIYKVECGNNYGWKRFEGSRCTEYSED-EYGS-CADTDRSDFTFPIFEYCHYDYYVTSPTQDDYTGDNDICGDGSLLGNTVIGGYVYRGQAYADLIYGAYVFADYTARNILYITQEDDGTWTKGSIISDGSMGAFSFSEDVDGELFIIDESNEIYYLPCGDLCS 693
TR +EEVLL T + H+AGWLGFKP DYG+ P E+C+IG RN WRCGFDRL D LYCGDVG +E I +ECGNNYGW RFEGSRC E +D E+ C DRS FT+P+FEYCH DY T + ++TG D CGD ++GN VIGGYVYRG ++DL+ GAY+F D T RNI ++ +E+ G W G+IISD S+ SF+EDV+GE+ ++D + +Y++PCGDLC+
Sbjct: 175 TRATEEVLLTTVPKYNSIHSAGWLGFKPSDYGSTDPGNHSQDETTMLGAMMRISVPSDGTGYTIPPGNYPGAKAEVCAIGLRNPWRCGFDRLNDNLYCGDVGHTLVEEINLIECGNNYGWSRFEGSRCQEAVQDNEFNPPCDGVDRSGFTYPLFEYCHPDYDSTDADEQEFTGGADTCGDRFVVGNCVIGGYVYRGNFFSDLLDGAYIFGDSTMRNIYFLREEEAG-WAVGTIISDASVQIVSFAEDVNGEIMMLDYQHRMYHMPCGDLCA 444
BLAST of mRNA_H-elongata_contig57110.13165.1 vs. uniprot
Match: D7G6T7_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6T7_ECTSI) HSP 1 Score: 265 bits (677), Expect = 7.300e-81 Identity = 126/219 (57.53%), Postives = 148/219 (67.58%), Query Frame = 1
Query: 103 LPEICSIGFRNIWRCGFDRLTDELYCGDVGQDYIESIYKVECGNNYGWKRFEGSRCTEYSEDEYGSCADTDRSDFTFPIFEYCHYDYYVTSPTQDDYTGDNDICGDGSLLGNTVIGGYVYRGQAYADLIYGAYVFADYTARNILYITQEDDGTWTKGSIISDGSMGAFSFSEDVDGELFIIDESNEIYYLPCGDLCSEPETIPTDDDTVTYTYLGCYVD 759
LPEIC+ GFRN WRC FDR TDELYCGDVG +E I VECGNNYGW RFEGSRC E E G C DTDRS FTFPI+EYCH DY + D+ DICG + G VIGGYVYRG +AD++YGAYVF D T+ NI YI Q D+G W+ G+IISD S+ F+ED +GEL +ID+ IY LPCGD+C+ + D TY LGC+VD
Sbjct: 307 LPEICASGFRNPWRCSFDRETDELYCGDVGHTLVEEIDIVECGNNYGWSRFEGSRCQEAQESRDGPCLDTDRSAFTFPIYEYCHPDYSSDDADEADFVAGVDICGTRMVSGTAVIGGYVYRGTYFADVLYGAYVFGDNTSNNIYYIVQ-DNGVWSVGTIISDSSVSVIGFAEDNNGELMVIDQDYNIYQLPCGDMCAST-CLDQSDQQPTYESLGCFVD 523
BLAST of mRNA_H-elongata_contig57110.13165.1 vs. uniprot
Match: D7G4P3_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4P3_ECTSI) HSP 1 Score: 262 bits (670), Expect = 1.030e-79 Identity = 128/231 (55.41%), Postives = 161/231 (69.70%), Query Frame = 1
Query: 85 GDYGNN-LPEICSIGFRNIWRCGFDRLTDELYCGDVGQDYIESIYKVECGNNYGWKRFEGSRCTEYSED-EYG-SCADTDRSDFTFPIFEYCHYDYYVTSPTQDDYTGDNDICGDGSLLGNTVIGGYVYRGQAYADLIYGAYVFADYTARNILYITQEDDGTWTKGSIISDGSMGAFSFSEDVDGELFIIDESNEIYYLPCGDLCSEPETIPTDDDTVTYTYLGCYVDDAD 768
G+YG L EIC+IGFRN WRC FDR D LYCGDVG ++E I VECGNNYGW RFEGSRC E ED E+ +C RS FTFP++EYCH DY T D++T NDICGD LLGN VIGGYVYRG ++DL+ GAY+F D T +NI Y+ +ED G W+ G+IISD S+ SFSED++GE+ ++D + IY++PCGDLC+ T+D TY +GC+ D+ D
Sbjct: 363 GNYGGGALDEICAIGFRNPWRCSFDRENDNLYCGDVGHTFVEEIDLVECGNNYGWSRFEGSRCQEAVEDNEFNPACDGISRSGFTFPLYEYCHPDYQSTG--DDEFTAGNDICGDRVLLGNAVIGGYVYRGNYFSDLLNGAYIFGDSTMKNIYYLVEEDGG-WSLGTIISDASVQIISFSEDINGEIVLLDLQHNIYHMPCGDLCATTCLDQTEDQP-TYDSVGCFADEVD 589
BLAST of mRNA_H-elongata_contig57110.13165.1 vs. uniprot
Match: A0A6H5JZF5_9PHAE (GSDH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZF5_9PHAE) HSP 1 Score: 223 bits (567), Expect = 2.030e-66 Identity = 110/183 (60.11%), Postives = 132/183 (72.13%), Query Frame = 1
Query: 85 GDYGNN-LPEICSIGFRNIWRCGFDRLTDELYCGDVGQDYIESIYKVECGNNYGWKRFEGSRCTEYSED-EYGS-CADTDRSDFTFPIFEYCHYDYYVTSPTQDDYTGDNDICGDGSLLGNTVIGGYVYRGQAYADLIYGAYVFADYTARNILYITQEDDGTWTKGSIISDGSMGAFSFSEDV 624
G+YG L EIC+IGFRN WRC FDR TD+LYCGDVG ++E I VECGNNYGW RFEGSRC E E+ EY C DRS FTFP++EYCH DY +S D++T DICGD LLGN VIGGYVYRG ++DL+YG Y+F D T +NI Y+ +E DG W+ G+IISD S+ SF+EDV
Sbjct: 300 GNYGGGALDEICAIGFRNPWRCSFDRETDDLYCGDVGHTFVEEIDLVECGNNYGWSRFEGSRCQEAVENNEYNPPCDGVDRSGFTFPLYEYCHPDY--SSVGDDEFTAGVDICGDRVLLGNAVIGGYVYRGNFFSDLLYGHYIFGDSTMKNIFYLVKEGDG-WSLGTIISDASVQIISFAEDV 479
BLAST of mRNA_H-elongata_contig57110.13165.1 vs. uniprot
Match: D7FJP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJP1_ECTSI) HSP 1 Score: 206 bits (524), Expect = 3.420e-57 Identity = 101/234 (43.16%), Postives = 145/234 (61.97%), Query Frame = 1
Query: 106 PEICSIGFRNIWRCGFDRLTDELYCGDVGQDYIESIYKVECGNNYGWKRFEGSRCTEYSED-EYGSCADTDRSDFTFPIFEYCHYDYYVTSPTQDDYTGDNDICGDGSLLGNTVIGGYVYRGQAYADLIYGAYVFADYTARNILYITQEDDGTWTKGSIISD-GSMGAFSFSEDVDGELFIIDESNEIYYLPCGDLCSEPET--------IPTDDDTVTYTYLGCYVDDADRVL 777
PEIC+ G RN RC FD TDELYCGDVGQD +E + +ECG +YGW+ FEGSRC + E + G C+ DR+D+ FP+FEYCH DY +Q+++ D CGD ++ G +VIGG+VYRG Y D++ G Y+FAD++ ++ ++ G WT G+++S +G F+ E DGEL+++ IY LPCGDLC E +P D T T+ +GC++D + +
Sbjct: 381 PEICAWGLRNPHRCAFDTATDELYCGDVGQDRVEEVNVIECGKDYGWRMFEGSRCNDGFEGYDGGECSGLDRADYAFPVFEYCHVDY---DSSQEEF----DACGDRTVTGLSVIGGHVYRGAKYDDILGGHYIFADHSVGSLHHLAPAAGGGWTAGTVLSSIPKIGGFA--EGNDGELYMVGYQGNIYDLPCGDLCESGEEQKEASSACLPQSDTTPTFEEIGCFLDGEPKTM 605
BLAST of mRNA_H-elongata_contig57110.13165.1 vs. uniprot
Match: D7G960_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G960_ECTSI) HSP 1 Score: 194 bits (493), Expect = 7.870e-55 Identity = 108/271 (39.85%), Postives = 136/271 (50.18%), Query Frame = 1
Query: 1 TRDSEEVLLETSERPEFYHNAGWLGFKPGDYGN-----------------------------NLP---------EICSIGFRNIWRCGFDRLTDELYCGDVGQDYIESIYKVECGNNYGWKRFEGSRCTEYSED-EYGS-CADTDRSDFTFPIFEYCHYDYYVTSPTQDDYTGDNDICGDGSLLGNTVIGGYVYRGQAYADLIYGAYVFADYTARNILYITQEDDGTWTKGSIISDGSMGAFSFSEDVDGELFIIDESNEIYYLPCGDLCS 693
TR SEEVLL T + H+AGWLGFKP YG+ +P EIC+IG RN WRC FDRL D+LYCGDVGQ +E I +ECGNNYGW RFEGSRC E +D E+ C RS FTFP+FEYCH D+ T + +TG D CG+ ++DDG W G+IISD S+ SF+ED DGE+ ++D ++ IY +PCG+LC+
Sbjct: 136 TRASEEVLLTTVPKYNSVHSAGWLGFKPSAYGSPGYQDLYWTTGDGGPQTDPFNHSQDGTGYTIPPGNYHGAKAEICAIGLRNPWRCSFDRLNDDLYCGDVGQISVEEINFIECGNNYGWSRFEGSRCQEAVQDNEFNPPCDGISRSGFTFPLFEYCHPDFDSTDADEQKFTGGADTCGN--------------------------------------RFVEKDDGGWAVGTIISDASIQIISFAEDADGEIMLLDYNHNIYPMPCGNLCA 368
BLAST of mRNA_H-elongata_contig57110.13165.1 vs. uniprot
Match: A0A6H5KS07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS07_9PHAE) HSP 1 Score: 197 bits (501), Expect = 4.260e-54 Identity = 95/198 (47.98%), Postives = 122/198 (61.62%), Query Frame = 1
Query: 124 GFRNIWRCGFDRLTDELYCGDVGQDYIESIYKVECGNNYGWKRFEGSRCTEYSEDEYG-SCADTDRSDFTFPIFEYCHYDYY-VTSPTQDDYTGDNDICGDGSLLGNTVIGGYVYRGQAYADLIYGAYVFADYTARNILYITQEDDGTWTKGSIISDGSMGAFSFSEDVDGELFIIDESNEIYYLPCGDLCSEPETIP 711
G RN +RC FDRL D+LYCGDVG +ESI K+ECGNNYGW++FEG RC + ED++ +C DRS FTFP F YCH D+Y V P+ D ICGD S++G VI GYVYRG Y DL+ G +FAD+T + ++ G W G+I D +ED DGEL+++ I+ +PCGDLCS P
Sbjct: 267 GMRNPYRCSFDRLNDDLYCGDVGHLDVESIKKIECGNNYGWRQFEGDRCMQQIEDQFPETCEFLDRSPFTFPEFNYCHPDFYPVDHPSY--IVSDQSICGDRSVIGTAVIAGYVYRGAKYDDLLGGNLIFADFTLNRLYHLFPTKGGGWGSGTIKGDDFFAVSHIAEDNDGELYVVQYQGTIFEMPCGDLCSGDNVNP 462
BLAST of mRNA_H-elongata_contig57110.13165.1 vs. uniprot
Match: D7G962_ECTSI (GSDH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G962_ECTSI) HSP 1 Score: 135 bits (339), Expect = 2.020e-33 Identity = 70/134 (52.24%), Postives = 78/134 (58.21%), Query Frame = 1
Query: 82 PGDYGNNLPEICSIGFRNIWRCGFDRLTDELYCGDVGQDYIESIYKVECGNNYGWKRFEGSRCTEYSED-EYGS-CADTDRSDFTFPIFEYCHYDYYVTSPTQDDYTGDNDICGDGSLLGNTVIGGYVYRGQAY 477
PG+Y + EIC+IG RN WRC FDRL D+LYCGDVGQ E I VECGNNYGW RFEGSRC E +D E+ C DRS FTFP+FEYCH D+ T DIC D Y Y G Y
Sbjct: 290 PGNYHGSKAEICAIGLRNPWRCSFDRLNDDLYCGDVGQISAEEINLVECGNNYGWSRFEGSRCQEAVQDNEFNPPCDGVDRSGFTFPLFEYCHPDFDST-----------DICADACA-------DYAYYGTQY 405
BLAST of mRNA_H-elongata_contig57110.13165.1 vs. uniprot
Match: A0A835ZA54_9STRA (Sorbosone dehydrogenase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA54_9STRA) HSP 1 Score: 119 bits (298), Expect = 7.050e-27 Identity = 75/198 (37.88%), Postives = 103/198 (52.02%), Query Frame = 1
Query: 94 GNNLPEICSIGFRNIWRCGFDRLTDE---LYCGDVGQDYIESIYKVECGNNYGWKRFEGSRCTEYSEDEYGSCADTDRSDFTFPIFEYCHYDYYVTSPTQDDYTGDNDICGDGSLLGNTVIGGYVYRGQAYADLIYGAYVFADYTARNILYITQEDDGTWTKGSIISDGSMGAFSFSEDVDGELFIIDESNE-IYYLP 675
G + E+ + GFRN WRC FD+ E L+CGDVGQD +E + KV G N+GW+ FEG+R Y D + F P +EYCH +P D +C G +V GGYVYRG++ AD G Y+FADY IL I + DGT +I+ + ++D DGEL+I+ + +Y LP
Sbjct: 355 GKDPNEVFAYGFRNPWRCSFDKAKIEKPRLWCGDVGQDKVEKVTKVMKGENHGWRNFEGTR--------YNDLGSPDIT-FVQPEYEYCH------APDSD------ALCTLKPYTGQSVTGGYVYRGKSQADQYGGQYIFADYQQGLILRIFKNADGT-NDSDVIATTGFYISALAQDGDGELYIVKWGDGMVYKLP 530 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57110.13165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig57110.13165.1 >prot_H-elongata_contig57110.13165.1 ID=prot_H-elongata_contig57110.13165.1|Name=mRNA_H-elongata_contig57110.13165.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=259bp TRDSEEVLLETSERPEFYHNAGWLGFKPGDYGNNLPEICSIGFRNIWRCGback to top mRNA from alignment at H-elongata_contig57110:15..3769- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig57110.13165.1 ID=mRNA_H-elongata_contig57110.13165.1|Name=mRNA_H-elongata_contig57110.13165.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3755bp|location=Sequence derived from alignment at H-elongata_contig57110:15..3769- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig57110:15..3769- >mRNA_H-elongata_contig57110.13165.1 ID=mRNA_H-elongata_contig57110.13165.1|Name=mRNA_H-elongata_contig57110.13165.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1554bp|location=Sequence derived from alignment at H-elongata_contig57110:15..3769- (Himanthalia elongata Himel1 dioecious)back to top |