mRNA_H-elongata_contig57110.13165.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57110.13165.1
Unique NamemRNA_H-elongata_contig57110.13165.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig57110.13165.1 vs. uniprot
Match: D7G961_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G961_ECTSI)

HSP 1 Score: 285 bits (730), Expect = 1.350e-86
Identity = 139/262 (53.05%), Postives = 182/262 (69.47%), Query Frame = 1
Query:    1 TRDSEEVLLETSERPEFYHNAGWLGFKPGDYGNNLPEICSIGFRNIWRCGFDRLTDELYCGDVGQDYIESIYKVECGNNYGWKRFEGSRCTEYSED-EYGS-CADTDRSDFTFPIFEYCHYDYYVTSPTQDDYTGDNDICGDGSLLGNTVIGGYVYRGQAYADLIYGAYVFADYTARNILYITQEDDGTWTKGSIISDGSMGAFSFSEDVDGELFIIDESNEIYYLPCGDLCSEPETIPTDDDTVTYTYLGCYVDDA-DRVL 777
            TR +EEVLL T  +    H+AGWLGFKP  YG+   EIC+IG RN WRC FDRL D+LYCGDVGQ  +E I  +ECGNNYGW RFEGSRC E  +D E+   C   DRSDFT+P+FEYCH D+  T   + ++TG  D CG+  ++GN VIGGYVYRG  ++DL+ GAY+F D T RNI ++ +E+DG W  G+I+SD S+   SF+EDV+GE+ ++D +++IY++PCGDLC     +   +D   Y  LGC+ DD  DR L
Sbjct:  256 TRATEEVLLTTVPKYNSVHSAGWLGFKPSVYGS--AEICAIGLRNPWRCSFDRLNDDLYCGDVGQISVEEINFIECGNNYGWSRFEGSRCQEAVQDNEFNPPCDGVDRSDFTYPLFEYCHPDFDSTDADEQEFTGGADTCGNRFVVGNCVIGGYVYRGNFFSDLLDGAYIFGDSTMRNIYFLKEEEDG-WAVGTIVSDASVQIISFAEDVNGEIVLLDYNHDIYHMPCGDLCVTT-CLDQAEDQPAYESLGCFADDVNDRAL 513          
BLAST of mRNA_H-elongata_contig57110.13165.1 vs. uniprot
Match: A0A6H5KT40_9PHAE (GSDH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT40_9PHAE)

HSP 1 Score: 264 bits (674), Expect = 1.100e-82
Identity = 130/271 (47.97%), Postives = 167/271 (61.62%), Query Frame = 1
Query:    1 TRDSEEVLLETSERPEFYHNAGWLGFKPGDYGNNLP--------------------------------------EICSIGFRNIWRCGFDRLTDELYCGDVGQDYIESIYKVECGNNYGWKRFEGSRCTEYSED-EYGS-CADTDRSDFTFPIFEYCHYDYYVTSPTQDDYTGDNDICGDGSLLGNTVIGGYVYRGQAYADLIYGAYVFADYTARNILYITQEDDGTWTKGSIISDGSMGAFSFSEDVDGELFIIDESNEIYYLPCGDLCS 693
            TR +EEVLL T  +    H+AGWLGFKP DYG+  P                                      E+C+IG RN WRCGFDRL D LYCGDVG   +E I  +ECGNNYGW RFEGSRC E  +D E+   C   DRS FT+P+FEYCH DY  T   + ++TG  D CGD  ++GN VIGGYVYRG  ++DL+ GAY+F D T RNI ++ +E+ G W  G+IISD S+   SF+EDV+GE+ ++D  + +Y++PCGDLC+
Sbjct:  175 TRATEEVLLTTVPKYNSIHSAGWLGFKPSDYGSTDPGNHSQDETTMLGAMMRISVPSDGTGYTIPPGNYPGAKAEVCAIGLRNPWRCGFDRLNDNLYCGDVGHTLVEEINLIECGNNYGWSRFEGSRCQEAVQDNEFNPPCDGVDRSGFTYPLFEYCHPDYDSTDADEQEFTGGADTCGDRFVVGNCVIGGYVYRGNFFSDLLDGAYIFGDSTMRNIYFLREEEAG-WAVGTIISDASVQIVSFAEDVNGEIMMLDYQHRMYHMPCGDLCA 444          
BLAST of mRNA_H-elongata_contig57110.13165.1 vs. uniprot
Match: D7G6T7_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6T7_ECTSI)

HSP 1 Score: 265 bits (677), Expect = 7.300e-81
Identity = 126/219 (57.53%), Postives = 148/219 (67.58%), Query Frame = 1
Query:  103 LPEICSIGFRNIWRCGFDRLTDELYCGDVGQDYIESIYKVECGNNYGWKRFEGSRCTEYSEDEYGSCADTDRSDFTFPIFEYCHYDYYVTSPTQDDYTGDNDICGDGSLLGNTVIGGYVYRGQAYADLIYGAYVFADYTARNILYITQEDDGTWTKGSIISDGSMGAFSFSEDVDGELFIIDESNEIYYLPCGDLCSEPETIPTDDDTVTYTYLGCYVD 759
            LPEIC+ GFRN WRC FDR TDELYCGDVG   +E I  VECGNNYGW RFEGSRC E  E   G C DTDRS FTFPI+EYCH DY      + D+    DICG   + G  VIGGYVYRG  +AD++YGAYVF D T+ NI YI Q D+G W+ G+IISD S+    F+ED +GEL +ID+   IY LPCGD+C+    +   D   TY  LGC+VD
Sbjct:  307 LPEICASGFRNPWRCSFDRETDELYCGDVGHTLVEEIDIVECGNNYGWSRFEGSRCQEAQESRDGPCLDTDRSAFTFPIYEYCHPDYSSDDADEADFVAGVDICGTRMVSGTAVIGGYVYRGTYFADVLYGAYVFGDNTSNNIYYIVQ-DNGVWSVGTIISDSSVSVIGFAEDNNGELMVIDQDYNIYQLPCGDMCAST-CLDQSDQQPTYESLGCFVD 523          
BLAST of mRNA_H-elongata_contig57110.13165.1 vs. uniprot
Match: D7G4P3_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4P3_ECTSI)

HSP 1 Score: 262 bits (670), Expect = 1.030e-79
Identity = 128/231 (55.41%), Postives = 161/231 (69.70%), Query Frame = 1
Query:   85 GDYGNN-LPEICSIGFRNIWRCGFDRLTDELYCGDVGQDYIESIYKVECGNNYGWKRFEGSRCTEYSED-EYG-SCADTDRSDFTFPIFEYCHYDYYVTSPTQDDYTGDNDICGDGSLLGNTVIGGYVYRGQAYADLIYGAYVFADYTARNILYITQEDDGTWTKGSIISDGSMGAFSFSEDVDGELFIIDESNEIYYLPCGDLCSEPETIPTDDDTVTYTYLGCYVDDAD 768
            G+YG   L EIC+IGFRN WRC FDR  D LYCGDVG  ++E I  VECGNNYGW RFEGSRC E  ED E+  +C    RS FTFP++EYCH DY  T    D++T  NDICGD  LLGN VIGGYVYRG  ++DL+ GAY+F D T +NI Y+ +ED G W+ G+IISD S+   SFSED++GE+ ++D  + IY++PCGDLC+      T+D   TY  +GC+ D+ D
Sbjct:  363 GNYGGGALDEICAIGFRNPWRCSFDRENDNLYCGDVGHTFVEEIDLVECGNNYGWSRFEGSRCQEAVEDNEFNPACDGISRSGFTFPLYEYCHPDYQSTG--DDEFTAGNDICGDRVLLGNAVIGGYVYRGNYFSDLLNGAYIFGDSTMKNIYYLVEEDGG-WSLGTIISDASVQIISFSEDINGEIVLLDLQHNIYHMPCGDLCATTCLDQTEDQP-TYDSVGCFADEVD 589          
BLAST of mRNA_H-elongata_contig57110.13165.1 vs. uniprot
Match: A0A6H5JZF5_9PHAE (GSDH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZF5_9PHAE)

HSP 1 Score: 223 bits (567), Expect = 2.030e-66
Identity = 110/183 (60.11%), Postives = 132/183 (72.13%), Query Frame = 1
Query:   85 GDYGNN-LPEICSIGFRNIWRCGFDRLTDELYCGDVGQDYIESIYKVECGNNYGWKRFEGSRCTEYSED-EYGS-CADTDRSDFTFPIFEYCHYDYYVTSPTQDDYTGDNDICGDGSLLGNTVIGGYVYRGQAYADLIYGAYVFADYTARNILYITQEDDGTWTKGSIISDGSMGAFSFSEDV 624
            G+YG   L EIC+IGFRN WRC FDR TD+LYCGDVG  ++E I  VECGNNYGW RFEGSRC E  E+ EY   C   DRS FTFP++EYCH DY  +S   D++T   DICGD  LLGN VIGGYVYRG  ++DL+YG Y+F D T +NI Y+ +E DG W+ G+IISD S+   SF+EDV
Sbjct:  300 GNYGGGALDEICAIGFRNPWRCSFDRETDDLYCGDVGHTFVEEIDLVECGNNYGWSRFEGSRCQEAVENNEYNPPCDGVDRSGFTFPLYEYCHPDY--SSVGDDEFTAGVDICGDRVLLGNAVIGGYVYRGNFFSDLLYGHYIFGDSTMKNIFYLVKEGDG-WSLGTIISDASVQIISFAEDV 479          
BLAST of mRNA_H-elongata_contig57110.13165.1 vs. uniprot
Match: D7FJP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJP1_ECTSI)

HSP 1 Score: 206 bits (524), Expect = 3.420e-57
Identity = 101/234 (43.16%), Postives = 145/234 (61.97%), Query Frame = 1
Query:  106 PEICSIGFRNIWRCGFDRLTDELYCGDVGQDYIESIYKVECGNNYGWKRFEGSRCTEYSED-EYGSCADTDRSDFTFPIFEYCHYDYYVTSPTQDDYTGDNDICGDGSLLGNTVIGGYVYRGQAYADLIYGAYVFADYTARNILYITQEDDGTWTKGSIISD-GSMGAFSFSEDVDGELFIIDESNEIYYLPCGDLCSEPET--------IPTDDDTVTYTYLGCYVDDADRVL 777
            PEIC+ G RN  RC FD  TDELYCGDVGQD +E +  +ECG +YGW+ FEGSRC +  E  + G C+  DR+D+ FP+FEYCH DY     +Q+++    D CGD ++ G +VIGG+VYRG  Y D++ G Y+FAD++  ++ ++     G WT G+++S    +G F+  E  DGEL+++     IY LPCGDLC   E         +P  D T T+  +GC++D   + +
Sbjct:  381 PEICAWGLRNPHRCAFDTATDELYCGDVGQDRVEEVNVIECGKDYGWRMFEGSRCNDGFEGYDGGECSGLDRADYAFPVFEYCHVDY---DSSQEEF----DACGDRTVTGLSVIGGHVYRGAKYDDILGGHYIFADHSVGSLHHLAPAAGGGWTAGTVLSSIPKIGGFA--EGNDGELYMVGYQGNIYDLPCGDLCESGEEQKEASSACLPQSDTTPTFEEIGCFLDGEPKTM 605          
BLAST of mRNA_H-elongata_contig57110.13165.1 vs. uniprot
Match: D7G960_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G960_ECTSI)

HSP 1 Score: 194 bits (493), Expect = 7.870e-55
Identity = 108/271 (39.85%), Postives = 136/271 (50.18%), Query Frame = 1
Query:    1 TRDSEEVLLETSERPEFYHNAGWLGFKPGDYGN-----------------------------NLP---------EICSIGFRNIWRCGFDRLTDELYCGDVGQDYIESIYKVECGNNYGWKRFEGSRCTEYSED-EYGS-CADTDRSDFTFPIFEYCHYDYYVTSPTQDDYTGDNDICGDGSLLGNTVIGGYVYRGQAYADLIYGAYVFADYTARNILYITQEDDGTWTKGSIISDGSMGAFSFSEDVDGELFIIDESNEIYYLPCGDLCS 693
            TR SEEVLL T  +    H+AGWLGFKP  YG+                              +P         EIC+IG RN WRC FDRL D+LYCGDVGQ  +E I  +ECGNNYGW RFEGSRC E  +D E+   C    RS FTFP+FEYCH D+  T   +  +TG  D CG+                                         ++DDG W  G+IISD S+   SF+ED DGE+ ++D ++ IY +PCG+LC+
Sbjct:  136 TRASEEVLLTTVPKYNSVHSAGWLGFKPSAYGSPGYQDLYWTTGDGGPQTDPFNHSQDGTGYTIPPGNYHGAKAEICAIGLRNPWRCSFDRLNDDLYCGDVGQISVEEINFIECGNNYGWSRFEGSRCQEAVQDNEFNPPCDGISRSGFTFPLFEYCHPDFDSTDADEQKFTGGADTCGN--------------------------------------RFVEKDDGGWAVGTIISDASIQIISFAEDADGEIMLLDYNHNIYPMPCGNLCA 368          
BLAST of mRNA_H-elongata_contig57110.13165.1 vs. uniprot
Match: A0A6H5KS07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS07_9PHAE)

HSP 1 Score: 197 bits (501), Expect = 4.260e-54
Identity = 95/198 (47.98%), Postives = 122/198 (61.62%), Query Frame = 1
Query:  124 GFRNIWRCGFDRLTDELYCGDVGQDYIESIYKVECGNNYGWKRFEGSRCTEYSEDEYG-SCADTDRSDFTFPIFEYCHYDYY-VTSPTQDDYTGDNDICGDGSLLGNTVIGGYVYRGQAYADLIYGAYVFADYTARNILYITQEDDGTWTKGSIISDGSMGAFSFSEDVDGELFIIDESNEIYYLPCGDLCSEPETIP 711
            G RN +RC FDRL D+LYCGDVG   +ESI K+ECGNNYGW++FEG RC +  ED++  +C   DRS FTFP F YCH D+Y V  P+      D  ICGD S++G  VI GYVYRG  Y DL+ G  +FAD+T   + ++     G W  G+I  D        +ED DGEL+++     I+ +PCGDLCS     P
Sbjct:  267 GMRNPYRCSFDRLNDDLYCGDVGHLDVESIKKIECGNNYGWRQFEGDRCMQQIEDQFPETCEFLDRSPFTFPEFNYCHPDFYPVDHPSY--IVSDQSICGDRSVIGTAVIAGYVYRGAKYDDLLGGNLIFADFTLNRLYHLFPTKGGGWGSGTIKGDDFFAVSHIAEDNDGELYVVQYQGTIFEMPCGDLCSGDNVNP 462          
BLAST of mRNA_H-elongata_contig57110.13165.1 vs. uniprot
Match: D7G962_ECTSI (GSDH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G962_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 2.020e-33
Identity = 70/134 (52.24%), Postives = 78/134 (58.21%), Query Frame = 1
Query:   82 PGDYGNNLPEICSIGFRNIWRCGFDRLTDELYCGDVGQDYIESIYKVECGNNYGWKRFEGSRCTEYSED-EYGS-CADTDRSDFTFPIFEYCHYDYYVTSPTQDDYTGDNDICGDGSLLGNTVIGGYVYRGQAY 477
            PG+Y  +  EIC+IG RN WRC FDRL D+LYCGDVGQ   E I  VECGNNYGW RFEGSRC E  +D E+   C   DRS FTFP+FEYCH D+  T           DIC D           Y Y G  Y
Sbjct:  290 PGNYHGSKAEICAIGLRNPWRCSFDRLNDDLYCGDVGQISAEEINLVECGNNYGWSRFEGSRCQEAVQDNEFNPPCDGVDRSGFTFPLFEYCHPDFDST-----------DICADACA-------DYAYYGTQY 405          
BLAST of mRNA_H-elongata_contig57110.13165.1 vs. uniprot
Match: A0A835ZA54_9STRA (Sorbosone dehydrogenase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA54_9STRA)

HSP 1 Score: 119 bits (298), Expect = 7.050e-27
Identity = 75/198 (37.88%), Postives = 103/198 (52.02%), Query Frame = 1
Query:   94 GNNLPEICSIGFRNIWRCGFDRLTDE---LYCGDVGQDYIESIYKVECGNNYGWKRFEGSRCTEYSEDEYGSCADTDRSDFTFPIFEYCHYDYYVTSPTQDDYTGDNDICGDGSLLGNTVIGGYVYRGQAYADLIYGAYVFADYTARNILYITQEDDGTWTKGSIISDGSMGAFSFSEDVDGELFIIDESNE-IYYLP 675
            G +  E+ + GFRN WRC FD+   E   L+CGDVGQD +E + KV  G N+GW+ FEG+R        Y      D + F  P +EYCH      +P  D       +C      G +V GGYVYRG++ AD   G Y+FADY    IL I +  DGT     +I+       + ++D DGEL+I+   +  +Y LP
Sbjct:  355 GKDPNEVFAYGFRNPWRCSFDKAKIEKPRLWCGDVGQDKVEKVTKVMKGENHGWRNFEGTR--------YNDLGSPDIT-FVQPEYEYCH------APDSD------ALCTLKPYTGQSVTGGYVYRGKSQADQYGGQYIFADYQQGLILRIFKNADGT-NDSDVIATTGFYISALAQDGDGELYIVKWGDGMVYKLP 530          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57110.13165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G961_ECTSI1.350e-8653.05Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus... [more]
A0A6H5KT40_9PHAE1.100e-8247.97GSDH domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G6T7_ECTSI7.300e-8157.53WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G4P3_ECTSI1.030e-7955.41Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus... [more]
A0A6H5JZF5_9PHAE2.030e-6660.11GSDH domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FJP1_ECTSI3.420e-5743.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G960_ECTSI7.870e-5539.85Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus... [more]
A0A6H5KS07_9PHAE4.260e-5447.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G962_ECTSI2.020e-3352.24GSDH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835ZA54_9STRA7.050e-2737.88Sorbosone dehydrogenase-domain-containing protein ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57110contigH-elongata_contig57110:15..3769 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score294.7
Seed ortholog evalue4.3e-77
Seed eggNOG ortholog2880.D7G961
KEGG koko:K21430
GOsGO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0031224,GO:0031225,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0046658,GO:0071944
EggNOG free text desc.scavenger receptor activity
EggNOG OGs2QQKP@2759,COG2133@1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Exons6
Model size777
Cds size777
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57110.13165.1prot_H-elongata_contig57110.13165.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57110 15..3769 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930927.398282-CDS-H-elongata_contig57110:14..1641622930927.398282-CDS-H-elongata_contig57110:14..164Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57110 15..164 -
1691679628.2195997-CDS-H-elongata_contig57110:14..1641691679628.2195997-CDS-H-elongata_contig57110:14..164Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57110 15..164 -
1622930927.411174-CDS-H-elongata_contig57110:453..5561622930927.411174-CDS-H-elongata_contig57110:453..556Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57110 454..556 -
1691679628.2302997-CDS-H-elongata_contig57110:453..5561691679628.2302997-CDS-H-elongata_contig57110:453..556Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57110 454..556 -
1622930927.4297502-CDS-H-elongata_contig57110:918..9941622930927.4297502-CDS-H-elongata_contig57110:918..994Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57110 919..994 -
1691679628.2391737-CDS-H-elongata_contig57110:918..9941691679628.2391737-CDS-H-elongata_contig57110:918..994Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57110 919..994 -
1622930927.4452953-CDS-H-elongata_contig57110:1173..13971622930927.4452953-CDS-H-elongata_contig57110:1173..1397Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57110 1174..1397 -
1691679628.2482498-CDS-H-elongata_contig57110:1173..13971691679628.2482498-CDS-H-elongata_contig57110:1173..1397Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57110 1174..1397 -
1622930927.4610198-CDS-H-elongata_contig57110:1545..16671622930927.4610198-CDS-H-elongata_contig57110:1545..1667Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57110 1546..1667 -
1691679628.2625656-CDS-H-elongata_contig57110:1545..16671691679628.2625656-CDS-H-elongata_contig57110:1545..1667Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57110 1546..1667 -
1622930927.4991827-CDS-H-elongata_contig57110:3667..37691622930927.4991827-CDS-H-elongata_contig57110:3667..3769Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57110 3668..3769 -
1691679628.2712343-CDS-H-elongata_contig57110:3667..37691691679628.2712343-CDS-H-elongata_contig57110:3667..3769Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57110 3668..3769 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57110.13165.1

>prot_H-elongata_contig57110.13165.1 ID=prot_H-elongata_contig57110.13165.1|Name=mRNA_H-elongata_contig57110.13165.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=259bp
TRDSEEVLLETSERPEFYHNAGWLGFKPGDYGNNLPEICSIGFRNIWRCG
FDRLTDELYCGDVGQDYIESIYKVECGNNYGWKRFEGSRCTEYSEDEYGS
CADTDRSDFTFPIFEYCHYDYYVTSPTQDDYTGDNDICGDGSLLGNTVIG
GYVYRGQAYADLIYGAYVFADYTARNILYITQEDDGTWTKGSIISDGSMG
AFSFSEDVDGELFIIDESNEIYYLPCGDLCSEPETIPTDDDTVTYTYLGC
YVDDADRVL
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mRNA from alignment at H-elongata_contig57110:15..3769-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57110.13165.1 ID=mRNA_H-elongata_contig57110.13165.1|Name=mRNA_H-elongata_contig57110.13165.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3755bp|location=Sequence derived from alignment at H-elongata_contig57110:15..3769- (Himanthalia elongata Himel1 dioecious)
ACGCGCGACAGCGAGGAGGTACTCCTCGAAACTAGCGAACGACCCGAGTT TTACCACAACGCGGGCTGGTTGGGCTTCAAACCCGGAGACTACGGCAACA ATGTGAGTTCACGACGGCTTGGTACATGCGACAAAGTTTGTATGTGTTTT TCTGTGGTAGGTAGCGATGGAGTCGAGAATGGCGTGTGTGTGGCAAAAGT TATTATGCGATCTAGATCGAGTCCCTATCTAAACTCATCCACTACTACTA CTACAAGGTAATTTACCCGACTTGACGCACCGCCTCATACTATTTTCGAG AAACGGTGTATTGTTGATAGACGATGTACAGATGCTTATTGCCTTTGTCG CAAAATATCGTATTAATATTATTTTTAATAGTGGCTCGCAAGGGCTTCGT CGCACAGTGATTGTACAATATATTTTATTGAATCATGTTATTTTTAATAC CGCCCCGCAAGAGCTTCGTCGTGCAGGTATAGTCAGGCCGCTGCCGTACT ACTACTACGATTGTTATAGAGCTTTTCCTGATAGCACAAGTTTATACGTA TAAGCTCTAGTAGTATGAACGGGCGTACATCAAAAGCGAGGTTGTTTGTA CAAGCAATCTGCCTCAACAAAACGAGTAGAGCGCGGTACATCAATCGTGT ATGCATCACGCTGCCGGTACCAACGAAATCGAAGTTTAGCTTCGTCGGCA TCTCGAGTAGTACTGTAAAAGTAGCAAGATTGCACGCCATTGTGCTATGG CAGAGGGAGAGGGGCGTCTTGTTGGCTTTTTCTTGCTATATGTGATAAGA ATCGTCCCTGGATTCGCACCGTAAGCTTACAGTAGGAAACCGTTTACTGA ATGTGGGTTTACTTAGTAAGCCTACCTTTGCTTAAACATTTTGCGTTGCC GGGTGCAAAACAAATAATACGGGGTATCAAAGGTAAATGAGTCAAACCAT AGAGCACACAAATGAAGTGTTAGACAACCTCGTGAAACAGAGAAACTTGA GGGGGCCAAAACGAAAGTTTCAATGAAAACAACAAACAAACCCAACCGAG CACGCTATATAGCCTTCTTCCGATTACTACTATATACCATGTCTTGATCA ATCTGTATCCCTTGATTGATTGTCATCAGACAGCACTACGCTGCAGTTAA TTATATTTATATTTATATGCAATGATTGGCAGGAAGTAACGATCTCAGGT GGTACTCAAACGATAAATCAAAACCAGCTGCTCCGTCGCGTCGTCCTAAA CCTAATTCATCTTCTCATCTCCGCCCAAAACGCTGCAGTCCGACTACCAT GAACTGTTCTGGGCCCTAGGAGACGCGGGTCCACAAGAGGACACCCTTGA TCATGGACAGCGCACCGACGTTTTTTTTGCCTCTATGGTGCGAATCACTG TACCCTCCCAAGGCACCGGTTACGAGGTGCCAAATGACAACTACCCGGAT TCAGGTAAACAACACCGAGGAGGAAAGGTTGGGGGGGACGGTATCTGCCA TAGACGGGCATGATCCGTTTGGGGGGGGGTCGAGAATGTGAGCGCATCAA CTCGCAACAGCTTAGATAAAGTTGGGTGGGCACAACAAGTGCATGACATA TGGGCCAATCAAGATTGAAACGTTTCCCATCTTCGTCAAGTTCTCTGTGT ACAGTCTTGAATTCGTCGTATTCGGCCTTGGGCAAGTCATGGTAGCTGTA CGCTAGTAAGCGTTGAATTTTGCCCATGTTATGACGTTAGGTCAGTTTCC GGCCTACGTATATACCCCCTAAGACACATAACACATATAAAAGAGCATAC AATAGCTAGATCCGGCGGGGGGTTCAGCAAGACGACAAGTCGGCCATCGA CTGCGTGTACTGTAGCACGATGTATAGGTTTTTATTTTCAACACATTAGG CCTCATCGTTTTCAGTGACCCTAACTGATTAGAGACGTCGTCAAATGGGC CAAAGCTAGAAATTGGCGGTTGCCCACATGACCTTGGGGAAACAATGGAG CCTTTACGTTTTGAAGAAAGATCCAGCAGCGCGTATATAAACAAGAGTAT GATTTCCACTCTCCCGCCCCCTGCATGTTGACCCTTCTGCTGACGTGCAG AGTTGCCCGAGATATGTTCCATTGGTTTCCGTAACATATGGAGGTGTGGC TTCGACCGTCTCACCGATGAACTCTACTGCGGCGACGTCGGCCAGGATTA CATCGAGAGCATCTACAAAGTCGAGTAAGCAACAACGGTCTGTGGTGTTT GCATCGATCATGCCTCACCTCGCCATCGCCTCTACCCACCTCTCTGAGAT AATATTAATGCCCATATAGCGCCACAACCTATTTGACTGAACGTCACGGC TGAATGGTAAATCACTTGGCAGGTGCGGCAATAACTACGGTTGGAAGCGA TTCGAGGGGTCGCGATGCACGGAATACTCGGAAGACGAGTACGGATCGTG CGCAGATACTGACCGATCAGACTTCACTTTCCCGATATTCGAGTACTGCC ACTACGACTACTACGTGACTTCTCCTACACAAGATGATTACACCGGGGAC AACGACATATGTGGTGACGGGAGCCTTCTAGGGAACACAGTCATCGGTGA GCGTTGTGCATGGGAAAATGTTATACCGCCCAGTAACGAAGACACAGCAT TTTCTTCCCACGCATGGATACGGTTTCCAGAGAGGTGCGTAATATTTTCA GCCTCCACGAGATACCTGGTCATTCGCCATTATTTTTGCCCCGTTGCGCG ACGACTTTCTTAAATGCCGTTTTAGGAGGATATGTTTACAGGGGACAAGC ATACGCCGACCTGATATACGGAGCTTATGTCTTTGCTGACTACACGGCAA GGTGGGTAACATTTGCATCTCCAACGAATGGGATCTGAGCATACCTTTGA AAAATGCTGTTCATGCTGTGTTTCAATGCTGTTCACGCTGTGTTTTGTTG CTCTGGACAATCGAGATGACATCAGCGTAGTAAAACCCACGCGCAGAAGG CGTTATCGCAGCCTCTTTCTGGAACGTTGAGGCATCCTCAGATCTTTTTG TGTGTGCATGGAACTTCCGCGGAAGCTACACCATCATGAGATAATTTATT TTAGGAAGCTAGATCGCCCTTGGAAAAACGTTCAACTCACGAGAAGAATC TAACTGTACAATGGGGGGTGTCACATTCGCATCGCTTGCTTGTCCGCTTG CTTTGTATGGCAGGAATATATTATACATCACTCAAGAAGACGACGGGACG TGGACAAAAGGCAGTATCATTAGCGACGGAAGTATGGGCGCCTTCTCTTT CTCTGAAGATGTAGACGTGAGCGAGGGATACTTTCTGTGTATCTCCCGTA ATGTTGCAATGAGCCTGCTTTTTTTGCTTCCTAGCGATGATTCTTGACAG TACGCTACGAAAATAATTAGTACTATGCTTGGCATGAAGTATTATGTTTC GCATATTTTCACCTCGCGGCATGTATCCCGTTCGCTTTCACCTCGCGTGA TTTTACACGTGCTTATGAACGATCTTCACCAATTTACACCGCTACACCTG CTGCCATACCGGTGTTGTTGTGACCTGTCCCTGCCCACCCGCCCTGACGC TTCAGGGCGAGTTGTTCATCATCGACGAAAGCAACGAAATATATTACCTA CCCTGCGGTGACCTCTGCTCAGAACCGGAAACTATACCCACTGACGACGA CACTGTCACTTACACGTATCTTGGATGCTACGTTGACGATGCCGATCGCG TCTTG
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Coding sequence (CDS) from alignment at H-elongata_contig57110:15..3769-

>mRNA_H-elongata_contig57110.13165.1 ID=mRNA_H-elongata_contig57110.13165.1|Name=mRNA_H-elongata_contig57110.13165.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1554bp|location=Sequence derived from alignment at H-elongata_contig57110:15..3769- (Himanthalia elongata Himel1 dioecious)
ACGCGCGACAGCGAGGAGGTACTCCTCGAAACTAGCGAACGACCCGAGTT
TTACCACAACGCGGGCTGGTTGGGCTTCAAACCCGGAGACTACGGCAACA
ATACGCGCGACAGCGAGGAGGTACTCCTCGAAACTAGCGAACGACCCGAG
TTTTACCACAACGCGGGCTGGTTGGGCTTCAAACCCGGAGACTACGGCAA
CAATTTGCCCGAGATATGTTCCATTGGTTTCCGTAACATATGGAGGTGTG
GCTTCGACCGTCTCACCGATGAACTCTACTGCGGCGACGTCGGCCAGGAT
TACATCGAGAGCATCTACAAAGTCGATTGCCCGAGATATGTTCCATTGGT
TTCCGTAACATATGGAGGTGTGGCTTCGACCGTCTCACCGATGAACTCTA
CTGCGGCGACGTCGGCCAGGATTACATCGAGAGCATCTACAAAGTCGAGT
GCGGCAATAACTACGGTTGGAAGCGATTCGAGGGGTCGCGATGCACGGAA
TACTCGGAAGACGAGTACGGATCGTGCGCAGATACTGACCGATCAGACTT
CACTTTCCCGATATTCGAGTACTGCCACTACGACTACTACGTGACTTCTC
CTACACAAGATGATTACACCGGGGACAACGACATATGTGGTGACGGGAGC
CTTCTAGGGAACACAGTCATCGGTGCGGCAATAACTACGGTTGGAAGCGA
TTCGAGGGGTCGCGATGCACGGAATACTCGGAAGACGAGTACGGATCGTG
CGCAGATACTGACCGATCAGACTTCACTTTCCCGATATTCGAGTACTGCC
ACTACGACTACTACGTGACTTCTCCTACACAAGATGATTACACCGGGGAC
AACGACATATGTGGTGACGGGAGCCTTCTAGGGAACACAGTCATCGGAGG
ATATGTTTACAGGGGACAAGCATACGCCGACCTGATATACGGAGCTTATG
TCTTTGCTGACTACACGGCAAGGAGGATATGTTTACAGGGGACAAGCATA
CGCCGACCTGATATACGGAGCTTATGTCTTTGCTGACTACACGGCAAGGA
ATATATTATACATCACTCAAGAAGACGACGGGACGTGGACAAAAGGCAGT
ATCATTAGCGACGGAAGTATGGGCGCCTTCTCTTTCTCTGAAGATGTAGA
CGAATATATTATACATCACTCAAGAAGACGACGGGACGTGGACAAAAGGC
AGTATCATTAGCGACGGAAGTATGGGCGCCTTCTCTTTCTCTGAAGATGT
AGACGGCGAGTTGTTCATCATCGACGAAAGCAACGAAATATATTACCTAC
CCTGCGGTGACCTCTGCTCAGAACCGGAAACTATACCCACTGACGACGAC
ACTGTCACTTACACGTATCTTGGATGCTACGTTGACGATGCCGATCGCGT
CTTGGGCGAGTTGTTCATCATCGACGAAAGCAACGAAATATATTACCTAC
CCTGCGGTGACCTCTGCTCAGAACCGGAAACTATACCCACTGACGACGAC
ACTGTCACTTACACGTATCTTGGATGCTACGTTGACGATGCCGATCGCGT
CTTG
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