mRNA_H-elongata_contig57093.13164.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57093.13164.1
Unique NamemRNA_H-elongata_contig57093.13164.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig57093.13164.1 vs. uniprot
Match: D7G918_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G918_ECTSI)

HSP 1 Score: 294 bits (753), Expect = 7.180e-90
Identity = 169/296 (57.09%), Postives = 198/296 (66.89%), Query Frame = 1 
Query:   94 TIGAKRASTGNGKDQVDNFPTEDWSLTPPEAFAPSNRESKRGKTLSELHRLVIMRHSSRLDDPILERQQKLKAASVTSGSE---IMDTGGINSLGLNARDSDDPLAVPWPDRALRPYDCPIVDNDLPARQAKELCQYGFGKDTLILCSPFRRCLQTAGVVARTLGVDSITVHLEFGERMDKVRKEMTEEMEHRAMRRAEESSRGLRDAPLPQPAFCYLPKAGMLEALGGGVRLQGIVGKQPPANESGVEAKERFTDTISNVRKDHLPTRKVMVVTHGDALNSAGESLASQIIFEGE 972
            TIGAKR S+ NG       P E+W L  PE FAPS RE      L   H L +MRHS+RLDD I ERQ+KL A +  SGS+           S GL + D D+  AVPWPDRALRPYD PIVD DLPARQAK L + G G  T+I+CSPFRRCLQTAGVVARTLGV S+TVHL+ GERMDKVRKE+ E         +EE S G        PAF YL +A M  ALG GV+L+GIVG+QPP  ESG+EAK+RF  TI+NVR++ L    V+VV HGD L +AGESLASQI+FE +
Sbjct:  499 TIGAKRMSSENGM----GSPAEEWILDAPEGFAPSKREK-----LQSEHPLAVMRHSARLDDAIFERQRKLGAMTAGSGSDEDVAKKAVSDGSKGLESCDGDELAAVPWPDRALRPYDSPIVDTDLPARQAKALGRLGMGSQTVIICSPFRRCLQTAGVVARTLGVASVTVHLQVGERMDKVRKEIAE-----LALDSEERSDGTLATKETVPAFSYLAEADMRAALGAGVQLEGIVGEQPPEEESGIEAKQRFIVTIANVREEQLRDSPVLVVAHGDTLGAAGESLASQIVFEAD 780
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BLAST of mRNA_H-elongata_contig57093.13164.1 vs. uniprot
Match: A0A6H5KJH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH9_9PHAE)

HSP 1 Score: 290 bits (742), Expect = 2.080e-88
Identity = 169/296 (57.09%), Postives = 200/296 (67.57%), Query Frame = 1 
Query:   94 TIGAKRASTGNGKDQVDNFPTEDWSLTPPEAFAPSNRESKRGKTLSELHRLVIMRHSSRLDDPILERQQKLKAASVTSGSE---IMDTGGINSLGLNARDSDDPLAVPWPDRALRPYDCPIVDNDLPARQAKELCQYGFGKDTLILCSPFRRCLQTAGVVARTLGVDSITVHLEFGERMDKVRKEMTEEMEHRAMRRAEESSRGLRDAPLPQPAFCYLPKAGMLEALGGGVRLQGIVGKQPPANESGVEAKERFTDTISNVRKDHLPTRKVMVVTHGDALNSAGESLASQIIFEGE 972
            TIGAKR S+ NG       P E+W L  PE FAPS    KRGK  SE H L +MRHS+RLDD I ERQ+ L A +  SGS+           S GL + D D+  AVPWPDRALRPYD PIVD DLPARQAK L + G G  T+I+CSPFRRCLQTAGVVARTLGV S+TVHL+ GERMDKVRKE+ E         +EE S G        PAF YL +A M  ALG GV+L+ I+G+QPP  ESG+EAK+RF  TI+ VR++ L    V+VV HGD L++AGESLASQI+FEG+
Sbjct:  496 TIGAKRMSSENGM----GSPAEEWILDSPEGFAPS----KRGKLQSE-HPLAVMRHSARLDDAIFERQRMLGAITAGSGSDEDVAKKAVSDGSKGLESGDGDELAAVPWPDRALRPYDPPIVDTDLPARQAKALGRLGMGSQTVIVCSPFRRCLQTAGVVARTLGVASVTVHLQVGERMDKVRKEIAE-----LALDSEERSDGTLATKEAVPAFSYLEEADMRAALGAGVQLERIIGEQPPEEESGIEAKQRFIATIAKVREEQLRDSPVLVVAHGDTLDAAGESLASQIVFEGQ 777
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BLAST of mRNA_H-elongata_contig57093.13164.1 vs. uniprot
Match: A0A835YJL4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJL4_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 2.310e-16
Identity = 76/206 (36.89%), Postives = 96/206 (46.60%), Query Frame = 1 
Query:  409 WPDRALRPYDCPIVDNDLPARQAKELCQ--------YGFGKDTLI--------------------------LC---SPFRRCLQTAGVVARTLGVDSITVHLEFGERMDKVRKEMTEEMEHRAMRRAEESSR---GLRDAPLP------QPAFCYLPKAGMLEALGGGVRLQGIVGKQPPANESGVEAKERFTDTISNV-RKDHLP 885
            W DRA RPYD PIVD+   AR A  +          Y    D  +                          LC   SPFRRCLQTAG VAR  G   + VHL  GERMDKVR+E         +  AEE+ R      DAP P      + AF YL    M +ALG GV L  ++G++PP  ES ++AK R++  ++ + R   LP
Sbjct:  395 WTDRAARPYDTPIVDDGRAARAALAVLDSGALEGAWYSGASDATVWEMAAAGAPIGXXXXXXXXXXXXXXXLCIVSSPFRRCLQTAGHVARVFGCGVVHVHLGVGERMDKVRQECGPGT--LLVDPAEEAQRPDASASDAPPPAASSLRRVAFAYLTPEEMGDALGEGVALGTVLGERPPLTESAMQAKLRYSHVLARMCRGKELP 598
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BLAST of mRNA_H-elongata_contig57093.13164.1 vs. uniprot
Match: A0A812JSX5_9DINO (VAPB protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812JSX5_9DINO)

HSP 1 Score: 55.5 bits (132), Expect = 9.570e-5
Identity = 32/79 (40.51%), Postives = 42/79 (53.16%), Query Frame = 1 
Query:  409 WPDRALRPYDCPIVDNDLPARQAKELCQYGFGKDTL--------ILCSPFRRCLQTAGVVARTLGVDSITVHLEFGERM 621
            WPD   RPYD PI + +LP   A+ L      K++L        ++ SPFRRCLQTA +  R LG+  + V    GE M
Sbjct:   34 WPDAGQRPYDTPISNEELPLESAQVL------KESLPEGVAVCAVVSSPFRRCLQTAALAGRQLGLKMLHVDNRLGELM 106
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57093.13164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G918_ECTSI7.180e-9057.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJH9_9PHAE2.080e-8857.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YJL4_9STRA2.310e-1636.89Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A812JSX5_9DINO9.570e-540.51VAPB protein n=1 Tax=Symbiodinium natans TaxID=878... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57093contigH-elongata_contig57093:245..1216 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHistidine phosphatase superfamily, clade-1
Ec32 orthologEc-15_002240.1
Exons1
Model size972
Cds size972
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930927.3312345-CDS-H-elongata_contig57093:244..12161622930927.3312345-CDS-H-elongata_contig57093:244..1216Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57093 245..1216 -
1691679628.2060306-CDS-H-elongata_contig57093:244..12161691679628.2060306-CDS-H-elongata_contig57093:244..1216Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57093 245..1216 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57093.13164.1prot_H-elongata_contig57093.13164.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57093 245..1216 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57093.13164.1

>prot_H-elongata_contig57093.13164.1 ID=prot_H-elongata_contig57093.13164.1|Name=mRNA_H-elongata_contig57093.13164.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=324bp
AEEENEEEDENETGLRGSDGGPDLAGGKETGTIGAKRASTGNGKDQVDNF
PTEDWSLTPPEAFAPSNRESKRGKTLSELHRLVIMRHSSRLDDPILERQQ
KLKAASVTSGSEIMDTGGINSLGLNARDSDDPLAVPWPDRALRPYDCPIV
DNDLPARQAKELCQYGFGKDTLILCSPFRRCLQTAGVVARTLGVDSITVH
LEFGERMDKVRKEMTEEMEHRAMRRAEESSRGLRDAPLPQPAFCYLPKAG
MLEALGGGVRLQGIVGKQPPANESGVEAKERFTDTISNVRKDHLPTRKVM
VVTHGDALNSAGESLASQIIFEGE
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mRNA from alignment at H-elongata_contig57093:245..1216-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57093.13164.1 ID=mRNA_H-elongata_contig57093.13164.1|Name=mRNA_H-elongata_contig57093.13164.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=972bp|location=Sequence derived from alignment at H-elongata_contig57093:245..1216- (Himanthalia elongata Himel1 dioecious)
GCCGAAGAGGAAAACGAAGAGGAAGATGAGAACGAAACTGGTCTGCGAGG
ATCGGACGGCGGTCCTGATCTGGCAGGAGGAAAGGAGACGGGAACGATCG
GAGCAAAACGAGCGTCCACTGGAAACGGAAAGGACCAGGTCGATAATTTC
CCGACAGAGGACTGGAGTTTAACGCCGCCGGAGGCATTCGCCCCTTCTAA
TCGCGAGAGTAAACGTGGGAAGACCCTGTCGGAGTTGCATCGTCTTGTCA
TCATGCGGCACTCTTCTCGCCTGGATGATCCCATCCTAGAGCGACAGCAG
AAACTCAAGGCTGCGTCGGTGACCAGCGGTAGCGAAATAATGGACACCGG
AGGGATAAACAGTCTAGGCTTGAACGCCCGAGACAGCGATGACCCGCTAG
CAGTGCCTTGGCCGGACAGGGCTCTCCGACCATACGACTGCCCAATCGTC
GACAATGACCTACCCGCGCGACAGGCGAAAGAGCTCTGTCAATATGGGTT
CGGCAAAGACACCTTGATTCTGTGTTCTCCCTTTCGACGCTGTCTCCAGA
CCGCGGGCGTCGTGGCAAGAACGCTAGGCGTGGACAGCATCACGGTGCAC
CTGGAATTTGGAGAACGCATGGACAAGGTGCGCAAGGAGATGACGGAAGA
GATGGAACACCGGGCGATGAGGCGCGCGGAGGAAAGCTCCCGTGGTCTTC
GCGATGCTCCGTTACCCCAACCTGCGTTTTGCTACCTCCCCAAAGCCGGC
ATGCTTGAAGCGCTCGGCGGAGGAGTGCGATTACAAGGGATCGTCGGGAA
GCAGCCGCCGGCGAATGAGAGCGGAGTCGAAGCCAAGGAACGGTTCACAG
ACACGATCAGTAACGTTCGAAAGGACCATCTGCCTACGCGGAAAGTGATG
GTTGTGACTCACGGCGATGCGCTAAATTCAGCGGGGGAATCGCTTGCGTC
TCAGATCATTTTCGAAGGTGAG
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Coding sequence (CDS) from alignment at H-elongata_contig57093:245..1216-

>mRNA_H-elongata_contig57093.13164.1 ID=mRNA_H-elongata_contig57093.13164.1|Name=mRNA_H-elongata_contig57093.13164.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1944bp|location=Sequence derived from alignment at H-elongata_contig57093:245..1216- (Himanthalia elongata Himel1 dioecious)
GCCGAAGAGGAAAACGAAGAGGAAGATGAGAACGAAACTGGTCTGCGAGG
ATCGGACGGCGGTCCTGATCTGGCAGGAGGAAAGGAGACGGGAACGATCG
GAGCAAAACGAGCGTCCACTGGAAACGGAAAGGACCAGGTCGATAATTTC
CCGACAGAGGACTGGAGTTTAACGCCGCCGGAGGCATTCGCCCCTTCTAA
TCGCGAGAGTAAACGTGGGAAGACCCTGTCGGAGTTGCATCGTCTTGTCA
TCATGCGGCACTCTTCTCGCCTGGATGATCCCATCCTAGAGCGACAGCAG
AAACTCAAGGCTGCGTCGGTGACCAGCGGTAGCGAAATAATGGACACCGG
AGGGATAAACAGTCTAGGCTTGAACGCCCGAGACAGCGATGACCCGCTAG
CAGTGCCTTGGCCGGACAGGGCTCTCCGACCATACGACTGCCCAATCGTC
GACAATGACCTACCCGCGCGACAGGCGAAAGAGCTCTGTCAATATGGGTT
CGGCAAAGACACCTTGATTCTGTGTTCTCCCTTTCGACGCTGTCTCCAGA
CCGCGGGCGTCGTGGCAAGAACGCTAGGCGTGGACAGCATCACGGTGCAC
CTGGAATTTGGAGAACGCATGGACAAGGTGCGCAAGGAGATGACGGAAGA
GATGGAACACCGGGCGATGAGGCGCGCGGAGGAAAGCTCCCGTGGTCTTC
GCGATGCTCCGTTACCCCAACCTGCGTTTTGCTACCTCCCCAAAGCCGGC
ATGCTTGAAGCGCTCGGCGGAGGAGTGCGATTACAAGGGATCGTCGGGAA
GCAGCCGCCGGCGAATGAGAGCGGAGTCGAAGCCAAGGAACGGTTCACAG
ACACGATCAGTAACGTTCGAAAGGACCATCTGCCTACGCGGAAAGTGATG
GTTGTGACTCACGGCGATGCGCTAAATTCAGCGGGGGAATCGCTTGCGTC
TCAGATCATTTTCGAAGGTGAGGCCGAAGAGGAAAACGAAGAGGAAGATG
AGAACGAAACTGGTCTGCGAGGATCGGACGGCGGTCCTGATCTGGCAGGA
GGAAAGGAGACGGGAACGATCGGAGCAAAACGAGCGTCCACTGGAAACGG
AAAGGACCAGGTCGATAATTTCCCGACAGAGGACTGGAGTTTAACGCCGC
CGGAGGCATTCGCCCCTTCTAATCGCGAGAGTAAACGTGGGAAGACCCTG
TCGGAGTTGCATCGTCTTGTCATCATGCGGCACTCTTCTCGCCTGGATGA
TCCCATCCTAGAGCGACAGCAGAAACTCAAGGCTGCGTCGGTGACCAGCG
GTAGCGAAATAATGGACACCGGAGGGATAAACAGTCTAGGCTTGAACGCC
CGAGACAGCGATGACCCGCTAGCAGTGCCTTGGCCGGACAGGGCTCTCCG
ACCATACGACTGCCCAATCGTCGACAATGACCTACCCGCGCGACAGGCGA
AAGAGCTCTGTCAATATGGGTTCGGCAAAGACACCTTGATTCTGTGTTCT
CCCTTTCGACGCTGTCTCCAGACCGCGGGCGTCGTGGCAAGAACGCTAGG
CGTGGACAGCATCACGGTGCACCTGGAATTTGGAGAACGCATGGACAAGG
TGCGCAAGGAGATGACGGAAGAGATGGAACACCGGGCGATGAGGCGCGCG
GAGGAAAGCTCCCGTGGTCTTCGCGATGCTCCGTTACCCCAACCTGCGTT
TTGCTACCTCCCCAAAGCCGGCATGCTTGAAGCGCTCGGCGGAGGAGTGC
GATTACAAGGGATCGTCGGGAAGCAGCCGCCGGCGAATGAGAGCGGAGTC
GAAGCCAAGGAACGGTTCACAGACACGATCAGTAACGTTCGAAAGGACCA
TCTGCCTACGCGGAAAGTGATGGTTGTGACTCACGGCGATGCGCTAAATT
CAGCGGGGGAATCGCTTGCGTCTCAGATCATTTTCGAAGGTGAG
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