mRNA_H-elongata_contig56943.13148.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig56943.13148.1
Unique NamemRNA_H-elongata_contig56943.13148.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig56943.13148.1 vs. uniprot
Match: A0A6H5K3N5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3N5_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 4.980e-40
Identity = 85/129 (65.89%), Postives = 94/129 (72.87%), Query Frame = 1 
Query:    1 QDDRTAFFFACEHCHKPVAEFLVDQRGVNVNEKDKPAGHSPLHRACIAGQTRDAKAAVAEGLVSWLLSEGDADANAADLAGRVPGEADLAREAPKLRPTPQAPGIRKMLEHARMGVAPGTPSVPAVAAG 387
            +DDRTAFFFACEHCH PVA FLV Q GV VN KDKP+GH+ LHRACIAGQTR+ KA   E L+SWLLS   ADA A DL GR+PG ADL+ EAP L+PT QAP I K LE AR G    TP+  A A G
Sbjct:   77 KDDRTAFFFACEHCHTPVANFLVGQAGVEVNAKDKPSGHTALHRACIAGQTRE-KAQATE-LISWLLSSAKADAKATDLGGRMPGNADLSAEAPSLKPTAQAPAIAKSLEDARSGGGVTTPAAAAPAPG 203
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BLAST of mRNA_H-elongata_contig56943.13148.1 vs. uniprot
Match: D7FHR2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHR2_ECTSI)

HSP 1 Score: 155 bits (393), Expect = 7.840e-39
Identity = 79/115 (68.70%), Postives = 87/115 (75.65%), Query Frame = 1 
Query:    1 QDDRTAFFFACEHCHKPVAEFLVDQRGVNVNEKDKPAGHSPLHRACIAGQTRDAKAAVAEGLVSWLLSEGDADANAADLAGRVPGEADLAREAPKLRPTPQAPGIRKMLEHARMG 345
            +DDRTAFFFACEHCH PVA FLV Q GV VN KDKP+GH+ LHRACIAGQTR+ KA   E L+SWLLS   AD  A DL GR+PG ADL+ EAP L+PT QAP I K LE AR G
Sbjct:   26 KDDRTAFFFACEHCHTPVANFLVGQAGVEVNAKDKPSGHTALHRACIAGQTRE-KAQATE-LISWLLSSAKADTKATDLGGRMPGNADLSAEAPSLKPTAQAPAITKSLEDARSG 138
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56943.13148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K3N5_9PHAE4.980e-4065.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHR2_ECTSI7.840e-3968.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56943contigH-elongata_contig56943:388..1948 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1059
Cds size1059
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56943.13148.1prot_H-elongata_contig56943.13148.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig56943 388..1948 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930925.5616655-CDS-H-elongata_contig56943:387..5521622930925.5616655-CDS-H-elongata_contig56943:387..552Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56943 388..552 +
1691679627.4778109-CDS-H-elongata_contig56943:387..5521691679627.4778109-CDS-H-elongata_contig56943:387..552Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56943 388..552 +
1622930925.5830567-CDS-H-elongata_contig56943:919..11141622930925.5830567-CDS-H-elongata_contig56943:919..1114Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56943 920..1114 +
1691679627.4910753-CDS-H-elongata_contig56943:919..11141691679627.4910753-CDS-H-elongata_contig56943:919..1114Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56943 920..1114 +
1622930925.6052926-CDS-H-elongata_contig56943:1249..19481622930925.6052926-CDS-H-elongata_contig56943:1249..1948Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56943 1250..1948 +
1691679627.509668-CDS-H-elongata_contig56943:1249..19481691679627.509668-CDS-H-elongata_contig56943:1249..1948Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56943 1250..1948 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig56943.13148.1

>prot_H-elongata_contig56943.13148.1 ID=prot_H-elongata_contig56943.13148.1|Name=mRNA_H-elongata_contig56943.13148.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=353bp
QDDRTAFFFACEHCHKPVAEFLVDQRGVNVNEKDKPAGHSPLHRACIAGQ
TRDAKAAVAEGLVSWLLSEGDADANAADLAGRVPGEADLAREAPKLRPTP
QAPGIRKMLEHARMGVAPGTPSVPAVAAGAVGGSVTFHDTVAPRLSSPSR
VAERAAALASKTAPVLSAPTPAVVGSGVSSGTTPAFEAQAKAKAKASASP
GLKAPSSSSPPRKAAENPDASSPPSSPPWNVKLRPGGVKPRSERGHPATA
SSVPAERGGRVRVTPSAALAEKKKTPVTKQYPYGQKKASGSSMPSSGNGP
VAPSSAPLGRFPRQAAGIPTSDTVAPSNSATGASAAAVIGASHGPKASAL
AAA
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mRNA from alignment at H-elongata_contig56943:388..1948+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig56943.13148.1 ID=mRNA_H-elongata_contig56943.13148.1|Name=mRNA_H-elongata_contig56943.13148.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1561bp|location=Sequence derived from alignment at H-elongata_contig56943:388..1948+ (Himanthalia elongata Himel1 dioecious)
CAGGATGACCGCACCGCCTTCTTCTTCGCCTGCGAGCACTGCCACAAGCC
CGTAGCGGAGTTCTTAGTTGACCAGAGAGGCGTTAACGTAAACGAAAAGG
ACAAGCCGGCGGGTCACTCGCCTCTACACCGCGCCTGCATCGCCGGCCAG
ACCAGGGATGCCAAGGTGGGGCAAAAGACCCTAAAGTGTATCACGGGTCT
CTGAAAAGAAGCAGGCCCGGCTTCCCTTGCCCTCACCTTGAATGCAGTGT
CACGGGACCATTGAGCGGTTGCAAGCGCCCTCATTTCCCCGAATTTGGCG
CTGTCCCTATGTTTTAATTGTAAGCATCTATATTACGGGATTAGGCACCG
GCTGAGTAAGCAGAGGCGCGCATTTCATTGCTATTTTTTGGTTGCCGCCT
CAAACACGCTAAAATGTTACTGCGAAAACCACCTGCTACGCTATATCCGA
AGGCAAGTTTGTGCTCGTGTGCCATTTTTTACGACTACTGTGTTTGGTAC
TTATGCCGTATGGTTCGCCACACCGCCTACAGGCAGCCGTCGCGGAGGGC
CTCGTGTCGTGGCTTCTCTCCGAGGGTGATGCGGACGCCAACGCGGCTGA
CCTTGCCGGACGCGTGCCAGGAGAAGCAGACCTGGCAAGGGAAGCCCCTA
AGCTTAGGCCCACTCCGCAGGCACCTGGGATTAGAAAAATGCTTGAGCAC
GCTCGCATGGGAGTCGCCCCGGGTACAGTTTCATCCATGGCCGAGAAGCC
AATGCCGGAGCCAGAGCCTGTCGCCGCTAGAGCCACTGCTACATCGACGA
CCGCTTCCGGGCGCCCGACGATGACGGTCAACGCCGCTAGGGCCAAGACG
TCGATAAAAAAGCCGTCCGTTCCTGCCGTTGCCGCAGGCGCAGTTGGCGG
ATCGGTGACGTTCCACGATACCGTGGCTCCCCGGCTTTCATCCCCCTCCC
GCGTTGCAGAGAGAGCCGCCGCCCTGGCCTCCAAGACAGCTCCGGTTTTG
TCTGCTCCGACGCCGGCCGTGGTCGGGTCGGGGGTTTCTTCTGGGACCAC
TCCAGCTTTCGAAGCGCAGGCAAAGGCCAAGGCCAAGGCGTCGGCATCCC
CTGGCCTGAAAGCGCCGTCCTCGTCTTCGCCGCCGCGAAAGGCAGCCGAG
AACCCCGACGCCTCCTCACCACCCTCCTCCCCGCCGTGGAACGTGAAGCT
GCGTCCTGGAGGAGTGAAACCTCGTTCGGAAAGAGGGCATCCAGCTACGG
CTAGCTCGGTGCCGGCCGAGCGGGGTGGACGCGTACGTGTGACCCCTTCG
GCGGCTCTGGCCGAGAAGAAGAAGACCCCTGTGACGAAGCAATACCCTTA
CGGACAGAAAAAGGCGTCTGGGAGTTCCATGCCCTCATCGGGGAACGGCC
CGGTAGCTCCGTCCTCAGCCCCGTTGGGACGTTTCCCTCGCCAGGCCGCG
GGGATCCCCACGTCGGACACCGTCGCCCCGTCTAACTCTGCAACCGGTGC
TTCCGCTGCCGCAGTGATCGGGGCCTCCCATGGTCCCAAGGCTTCTGCTC
TTGCAGCGGCG
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Coding sequence (CDS) from alignment at H-elongata_contig56943:388..1948+

>mRNA_H-elongata_contig56943.13148.1 ID=mRNA_H-elongata_contig56943.13148.1|Name=mRNA_H-elongata_contig56943.13148.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2118bp|location=Sequence derived from alignment at H-elongata_contig56943:388..1948+ (Himanthalia elongata Himel1 dioecious)
CAGGATGACCGCACCGCCTTCTTCTTCGCCTGCGAGCACTGCCACAAGCC
CGTAGCGGAGTTCTTAGTTGACCAGAGAGGCGTTAACGTAAACGAAAAGG
ACAAGCCGGCGGGTCACTCGCCTCTACACCGCGCCTGCATCGCCGGCCAG
ACCAGGGATGCCAAGCAGGATGACCGCACCGCCTTCTTCTTCGCCTGCGA
GCACTGCCACAAGCCCGTAGCGGAGTTCTTAGTTGACCAGAGAGGCGTTA
ACGTAAACGAAAAGGACAAGCCGGCGGGTCACTCGCCTCTACACCGCGCC
TGCATCGCCGGCCAGACCAGGGATGCCAAGGCAGCCGTCGCGGAGGGCCT
CGTGTCGTGGCTTCTCTCCGAGGGTGATGCGGACGCCAACGCGGCTGACC
TTGCCGGACGCGTGCCAGGAGAAGCAGACCTGGCAAGGGAAGCCCCTAAG
CTTAGGCCCACTCCGCAGGCACCTGGGATTAGAAAAATGCTTGAGCACGC
TCGCATGGGAGTCGCCCCGGGTACAGCAGCCGTCGCGGAGGGCCTCGTGT
CGTGGCTTCTCTCCGAGGGTGATGCGGACGCCAACGCGGCTGACCTTGCC
GGACGCGTGCCAGGAGAAGCAGACCTGGCAAGGGAAGCCCCTAAGCTTAG
GCCCACTCCGCAGGCACCTGGGATTAGAAAAATGCTTGAGCACGCTCGCA
TGGGAGTCGCCCCGGGTACACCGTCCGTTCCTGCCGTTGCCGCAGGCGCA
GTTGGCGGATCGGTGACGTTCCACGATACCGTGGCTCCCCGGCTTTCATC
CCCCTCCCGCGTTGCAGAGAGAGCCGCCGCCCTGGCCTCCAAGACAGCTC
CGGTTTTGTCTGCTCCGACGCCGGCCGTGGTCGGGTCGGGGGTTTCTTCT
GGGACCACTCCAGCTTTCGAAGCGCAGGCAAAGGCCAAGGCCAAGGCGTC
GGCATCCCCTGGCCTGAAAGCGCCGTCCTCGTCTTCGCCGCCGCGAAAGG
CAGCCGAGAACCCCGACGCCTCCTCACCACCCTCCTCCCCGCCGTGGAAC
GTGAAGCTGCGTCCTGGAGGAGTGAAACCTCGTTCGGAAAGAGGGCATCC
AGCTACGGCTAGCTCGGTGCCGGCCGAGCGGGGTGGACGCGTACGTGTGA
CCCCTTCGGCGGCTCTGGCCGAGAAGAAGAAGACCCCTGTGACGAAGCAA
TACCCTTACGGACAGAAAAAGGCGTCTGGGAGTTCCATGCCCTCATCGGG
GAACGGCCCGGTAGCTCCGTCCTCAGCCCCGTTGGGACGTTTCCCTCGCC
AGGCCGCGGGGATCCCCACGTCGGACACCGTCGCCCCGTCTAACTCTGCA
ACCGGTGCTTCCGCTGCCGCAGTGATCGGGGCCTCCCATGGTCCCAAGGC
TTCTGCTCTTGCAGCGGCGCCGTCCGTTCCTGCCGTTGCCGCAGGCGCAG
TTGGCGGATCGGTGACGTTCCACGATACCGTGGCTCCCCGGCTTTCATCC
CCCTCCCGCGTTGCAGAGAGAGCCGCCGCCCTGGCCTCCAAGACAGCTCC
GGTTTTGTCTGCTCCGACGCCGGCCGTGGTCGGGTCGGGGGTTTCTTCTG
GGACCACTCCAGCTTTCGAAGCGCAGGCAAAGGCCAAGGCCAAGGCGTCG
GCATCCCCTGGCCTGAAAGCGCCGTCCTCGTCTTCGCCGCCGCGAAAGGC
AGCCGAGAACCCCGACGCCTCCTCACCACCCTCCTCCCCGCCGTGGAACG
TGAAGCTGCGTCCTGGAGGAGTGAAACCTCGTTCGGAAAGAGGGCATCCA
GCTACGGCTAGCTCGGTGCCGGCCGAGCGGGGTGGACGCGTACGTGTGAC
CCCTTCGGCGGCTCTGGCCGAGAAGAAGAAGACCCCTGTGACGAAGCAAT
ACCCTTACGGACAGAAAAAGGCGTCTGGGAGTTCCATGCCCTCATCGGGG
AACGGCCCGGTAGCTCCGTCCTCAGCCCCGTTGGGACGTTTCCCTCGCCA
GGCCGCGGGGATCCCCACGTCGGACACCGTCGCCCCGTCTAACTCTGCAA
CCGGTGCTTCCGCTGCCGCAGTGATCGGGGCCTCCCATGGTCCCAAGGCT
TCTGCTCTTGCAGCGGCG
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