mRNA_H-elongata_contig56788.13128.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig56788.13128.1
Unique NamemRNA_H-elongata_contig56788.13128.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig56788.13128.1 vs. uniprot
Match: D7FVS6_ECTSI (G-rich sequence factor 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVS6_ECTSI)

HSP 1 Score: 300 bits (767), Expect = 1.640e-95
Identity = 146/298 (48.99%), Postives = 208/298 (69.80%), Query Frame = 1 
Query:    1 ISIRGLKGISEHEMKQFLEEESGVVPVSVRVLPDNPVRNQSGLAFAEFETPEQATKALSLDGMNIMSRWIDVSLHMSKKRVKGPRAGVDSSPPFGENAKDGIIMVLKGLPFSLLDDEASTIKAFLLQYDISEDDILQMKVPKHNNTISNTGMAFLSLKDEEAAQKVIALKGTYIGNRWVDVSRWGDGAK-TPRMSHKAAIESARTTVPAALRKKYPDLPCVVVSGLPFHKTKNEISEYFIEQGIPQAAVEEMQMPLFLSTPNNTGACWLVINEAKAYNRIMSLNGAIIDDRWVTIADA 891
            I+I+GL+G  E E+    EE  G  PV V+++ +NP R++ GLAF +FE P+ A  AL LDG NI ++W+DVSLH+ K+     R G  S PPFG +  D ++++LKGLPFSLL+DE   IKAF+L ++I+ED+I+ + VPK N T  NTG+A +  K +E+  + + LKGT+IG RWVDVSRW +  K   R SH+  +E  R+ V  +L++K+P LP V +SGLPFHKT+ E+ E+    G+P++A+ E++MPLFL T NNTG CW+VI++  AY  +M LNGA +DDRW+T+ DA
Sbjct:  211 ITIKGLQGFPESEVVAIFEEAVGAAPVEVKIV-ENPNRSR-GLAFIKFEMPDLARAALHLDGTNIQNQWVDVSLHVMKQSSNEFRLGTGSQPPFGPDVPDEMVVMLKGLPFSLLEDE---IKAFILNHEIAEDEIVAINVPKFNETQFNTGIAMIHFKSDESVARALELKGTHIGERWVDVSRWNERNKPNQRKSHRDQMEETRSAVKTSLKEKHPSLPVVSISGLPFHKTEEEVIEFLEASGVPRSAMLEVEMPLFLQTQNNTGTCWVVISDEGAYETLMELNGATLDDRWLTVVDA 503
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BLAST of mRNA_H-elongata_contig56788.13128.1 vs. uniprot
Match: A0A6H5KVQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVQ1_9PHAE)

HSP 1 Score: 280 bits (716), Expect = 4.740e-88
Identity = 139/273 (50.92%), Postives = 192/273 (70.33%), Query Frame = 1 
Query:    1 ISIRGLKGISEHEMKQFLEEESGVVPVSVRVLPDNPVRNQSGLAFAEFETPEQATKALSLDGMNIMSRWIDVSLHMSKKRVKGPRAGVDSSPPFGENAKDGIIMVLKGLPFSLLDDEASTIKAFLLQYDISEDDILQMKVPKHNNTISNTGMAFLSLKDEEAAQKVIALKGTYIGNRWVDVSRWGDGAK-TPRMSHKAAIESARTTVPAALRKKYPDLPCVVVSGLPFHKTKNEISEYFIEQGIPQAAVEEMQMPLFLSTPNNTGACWLVINE 816
            ++I+GL G  E E+    EE  G  PV V ++ +NP R++ GLAF +FETP+ A  AL LDG NI ++W+DVSLH+ K+  K  R G  S PPFG +  D ++++LKGLPFSLLDDE   IKAF+L +DI+ED+I+ M VPK N T  NTG+A +  K +E+  + + LKGTYIG RWVDVSRW D  K   + SH+  +E  R+ V A+L++K+P LP V +SGLPFHKT+ E+ E+    G+P++A+ E++MPLFL T NNTGACW+VI++
Sbjct:  211 VTIKGLHGFPEGEVVAIFEEAVGAAPVEVNII-ENPNRSR-GLAFVKFETPDLARAALHLDGSNIQNQWVDVSLHVMKQTSKEFRLGSGSQPPFGPDVPDEMVVMLKGLPFSLLDDE---IKAFILNHDIAEDEIVAMSVPKFNETQFNTGIAMIHFKSDESVARALELKGTYIGERWVDVSRWNDRNKPNQKKSHRQQMEETRSAVQASLKEKHPSLPVVSISGLPFHKTEEEVIEFLEASGVPRSAMLEVEMPLFLQTQNNTGACWVVISD 478
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BLAST of mRNA_H-elongata_contig56788.13128.1 vs. uniprot
Match: A0A0D9X580_9ORYZ (Uncharacterized protein n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9X580_9ORYZ)

HSP 1 Score: 65.5 bits (158), Expect = 3.040e-8
Identity = 49/177 (27.68%), Postives = 87/177 (49.15%), Query Frame = 1 
Query:   25 ISEHEMKQFLEEESGVVPVSVRVLPDNPVRNQSGLAFAEFETPEQATKALSLDGMNIMSRWIDVSLHMSKKRVKGPRAGVDSSPPFGENAKDGIIMVLKGLPFSLLDDEASTIKAFLLQYDISEDDILQMKVPKHNNTISNTGMAFLSLKDEEAAQKVIALKGTYIG--NRWVDVSR 549
            I   ++K+F +E + V  V +    D   R   G    EF +PE A KAL ++G ++M R   V L ++++R        + +  F +  + G  + +KG   SL   E S IK  L  +     +I ++ VP    T ++ G+A++  KD+ +  K + L G+ +G  N +VD ++
Sbjct:  353 IDSDQVKEFFQEVAEVADVRLATHEDGTPR---GFGHVEFASPEDAKKALEMNGKDLMGR--QVRLDLARERGAYTPQSRNGAGSFQKQNRGGQSIFIKGFDSSL---EESKIKESLEGHFAECGEITRVSVPMDRETGASKGIAYIDFKDQASFSKALELSGSDLGGYNLYVDEAK 521
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56788.13128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FVS6_ECTSI1.640e-9548.99G-rich sequence factor 1 n=1 Tax=Ectocarpus silicu... [more]
A0A6H5KVQ1_9PHAE4.740e-8850.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0D9X580_9ORYZ3.040e-827.68Uncharacterized protein n=1 Tax=Leersia perrieri T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56788contigH-elongata_contig56788:1..2368 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score75.1
Seed ortholog evalue6.2e-11
Seed eggNOG ortholog4558.Sb01g019710.1
KEGG koko:K11294
KEGG Pathwayko05130,map05130
GOsGO:0000003,GO:0000469,GO:0000478,GO:0003002,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0007275,GO:0007389,GO:0008150,GO:0008152,GO:0009653,GO:0009790,GO:0009791,GO:0009793,GO:0009965,GO:0009987,GO:0010016,GO:0010051,GO:0010154,GO:0010305,GO:0010467,GO:0010588,GO:0016070,GO:0016072,GO:0022414,GO:0022613,GO:0022622,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048316,GO:0048364,GO:0048366,GO:0048367,GO:0048598,GO:0048608,GO:0048731,GO:0048825,GO:0048826,GO:0048827,GO:0048856,GO:0061458,GO:0070013,GO:0071704,GO:0071840,GO:0080056,GO:0080057,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0090698,GO:0097159,GO:0099402,GO:1901360,GO:1901363,GO:1905392
EggNOG free text desc.RNA recognition motif
EggNOG OGs37HJM@33090,3GEMF@35493,3ICTX@38820,3KTZ7@4447,KOG4210@1,KOG4210@2759
Ec32 ortholog descriptionNucleotide-binding alpha-beta plait domain
Ec32 orthologEc-01_001970.1
COG Functional cat.A
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009,ko03036
Hectar predicted targeting categoryother localisation
Exons6
Model size894
Cds size894
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56788.13128.1prot_H-elongata_contig56788.13128.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig56788 1..2368 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930922.8280675-CDS-H-elongata_contig56788:0..1681622930922.8280675-CDS-H-elongata_contig56788:0..168Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56788 1..168 +
1691679626.2035213-CDS-H-elongata_contig56788:0..1681691679626.2035213-CDS-H-elongata_contig56788:0..168Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56788 1..168 +
1622930922.8506162-CDS-H-elongata_contig56788:516..7081622930922.8506162-CDS-H-elongata_contig56788:516..708Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56788 517..708 +
1691679626.2187026-CDS-H-elongata_contig56788:516..7081691679626.2187026-CDS-H-elongata_contig56788:516..708Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56788 517..708 +
1622930922.8709128-CDS-H-elongata_contig56788:1015..11851622930922.8709128-CDS-H-elongata_contig56788:1015..1185Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56788 1016..1185 +
1691679626.2285597-CDS-H-elongata_contig56788:1015..11851691679626.2285597-CDS-H-elongata_contig56788:1015..1185Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56788 1016..1185 +
1622930922.8881707-CDS-H-elongata_contig56788:1498..16721622930922.8881707-CDS-H-elongata_contig56788:1498..1672Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56788 1499..1672 +
1691679626.2419856-CDS-H-elongata_contig56788:1498..16721691679626.2419856-CDS-H-elongata_contig56788:1498..1672Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56788 1499..1672 +
1622930922.9057364-CDS-H-elongata_contig56788:1941..20571622930922.9057364-CDS-H-elongata_contig56788:1941..2057Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56788 1942..2057 +
1691679626.250131-CDS-H-elongata_contig56788:1941..20571691679626.250131-CDS-H-elongata_contig56788:1941..2057Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56788 1942..2057 +
1622930922.9252734-CDS-H-elongata_contig56788:2294..23681622930922.9252734-CDS-H-elongata_contig56788:2294..2368Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56788 2295..2368 +
1691679626.259057-CDS-H-elongata_contig56788:2294..23681691679626.259057-CDS-H-elongata_contig56788:2294..2368Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56788 2295..2368 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig56788.13128.1

>prot_H-elongata_contig56788.13128.1 ID=prot_H-elongata_contig56788.13128.1|Name=mRNA_H-elongata_contig56788.13128.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=298bp
ISIRGLKGISEHEMKQFLEEESGVVPVSVRVLPDNPVRNQSGLAFAEFET
PEQATKALSLDGMNIMSRWIDVSLHMSKKRVKGPRAGVDSSPPFGENAKD
GIIMVLKGLPFSLLDDEASTIKAFLLQYDISEDDILQMKVPKHNNTISNT
GMAFLSLKDEEAAQKVIALKGTYIGNRWVDVSRWGDGAKTPRMSHKAAIE
SARTTVPAALRKKYPDLPCVVVSGLPFHKTKNEISEYFIEQGIPQAAVEE
MQMPLFLSTPNNTGACWLVINEAKAYNRIMSLNGAIIDDRWVTIADA*
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mRNA from alignment at H-elongata_contig56788:1..2368+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig56788.13128.1 ID=mRNA_H-elongata_contig56788.13128.1|Name=mRNA_H-elongata_contig56788.13128.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2368bp|location=Sequence derived from alignment at H-elongata_contig56788:1..2368+ (Himanthalia elongata Himel1 dioecious)
ATTTCGATAAGAGGCTTGAAGGGTATTTCTGAACACGAAATGAAGCAGTT
TCTGGAGGAGGAATCGGGGGTGGTTCCCGTGAGTGTACGGGTCTTGCCCG
ACAACCCCGTCCGAAACCAGAGTGGGCTTGCGTTCGCAGAATTCGAAACC
CCGGAGCAGGCCACGAAGGTAAGCCGTGCAGCAGAGGGGTCTGGAGCGCG
ACGGAATTGAACCGTTGCCATGGCGCAGGCGAATCACAAACCATCAGCGT
GTCGCAGAATGTTGCGGTAATCAGAGCGGAAGGAGATGGCCATGAAACTA
TCTCTGTACGGTTGGTTGTATGGTAACATGGATGTAGCGTGTCGTGTCGT
TGTACTCAATGAACCACATTCCCTTCGGCGACGACCCCCCGCGTTGAGCA
TCGATGGTAAGTCATTATGCTCATGGTTGACAATCCCTCTGTCCCCGTAG
CGTTGAATTGGTTCCCCTTGCTTTCGTCACCTAACTGCCCCGCCGACTCT
GCCGCCCCAACACCAGGCGCTCTCCCTGGACGGTATGAACATCATGAGTC
GGTGGATTGATGTGTCGCTGCACATGTCGAAGAAGCGGGTCAAGGGACCT
CGCGCGGGTGTGGATTCCAGCCCTCCGTTCGGCGAGAACGCCAAGGACGG
AATAATAATGGTGTTGAAGGGACTGCCGTTCTCGCTTTTAGATGACGAGG
CGAGTACGGTACAAACGTATAAAAATCGAAACTAATTTTAGGCGAAGGTT
AGAGCCTTTTCAATGAGCGACGGACATATCTCGTCGGTAGACAAGGCGCA
GATCAACCAAGAATCATTACCCTTGTTTTGACGGGACGACGCTGGCTCGT
GAAATCTAAGAACATAAGAGTCAAATTACGCCGTGTAGTGTTTTTCTCGA
AACGTGACCGAGAAATTTCATTCTGTGGTAAATTTAAGAATTAGCTTAAA
AAATACCCTGCATTTTTGTTGCGTCGTCTCTAACCGTTCTCGTCTCTTCC
TCTCGCAATCCTCAGATCAAGGCGTTCCTTTTGCAGTACGATATCTCCGA
AGACGACATCTTGCAGATGAAGGTACCGAAGCACAACAACACGATCTCCA
ACACGGGCATGGCGTTTCTGTCCCTGAAGGACGAGGAGGCCGCCCAGAAG
GTCATAGCCCTCAAGGGGACTTACATCGGCAACAGGTGAGGGGCAGAGGT
AGAAGTTCCCTTTTAAATGCGTCGTAGCTTGTTAAGGGCTGACCAATCTT
TGCATCGAGACCGACTTCTTCCTTGTATCGGTGTCTTGAGTCGATGTATG
CCATAAAGGCCTATTAATAGTGCCTCGACGTTTTCATATCGTGATGTGTG
TGTGTCTGTGCTATGCTAGGTCTAATAAATTACGTAGTTTATCATATTTG
CAACCGAAGCACAAATTGCTCCTGCAGTCGGCCGTAACCGTATCCCTGAA
GATCGATGGCTTATCATCCCCCCAACGCCTCCGCTTCCCACTCGGTAGAT
GGGTAGATGTCTCGCGGTGGGGCGACGGGGCGAAGACGCCGAGAATGTCC
CACAAGGCGGCCATCGAAAGCGCGCGCACCACGGTGCCCGCTGCGCTAAG
GAAAAAATACCCCGACCTTCCGTGTGTTGTGGTCTCGGGTCTCCCCTTCC
ACAAGACGAAGAATGAAATAAGGTGAGATTTGCTTGCTTGCGCGAGACGG
GCGGGCGCCCATGTCAGGTAGTCGGGAGTTTCTCTTCTTCTTTTTCTCCT
CCCTAGTGATAACTGGTGGTTTGTCAAAAAGTACTACAAAACAAAATTAG
GTTACTATTTTTCACACGTCTGTCGAAGCGGCGTGTGCTCGGCCTCCCAT
CTGACACATTTTGAAGATCGCTCTCGGGTTCTGCCTCCCGCGCTTGTGTC
GACCATCACTTTTTCTTTTTCTTTTTTTTCTGTGTCTCCAGTGAGTACTT
TATTGAGCAAGGCATCCCCCAGGCCGCTGTGGAGGAGATGCAGATGCCGC
TGTTCCTCTCCACTCCAAACAACACAGGCGCCTGTTGGCTCGTTATCAAT
GAGGCAAGTTTTATTGGGTTTTGTGCTTACCGTCTAACTCGCGGGAGAGC
TCTTTCCTTGGTTGAGATTTTCTGCAATACTGCTAAGTTGTCTGTGTTGA
GAAGTCGCCCTTGCTGCTCAGCTGTGGACGATTCAATACAAATAAACTAA
AATGAAACTCGACTTCACATAAATCATGCCTATCCTCGGTTGAAAAGCCT
TAACGTGTTCGTGGTACGTGATAATGGCTTCAACGCGCAGGAAGAGGCTT
ACAACCGCATCATGTCGTTGAACGGGGCCATCATCGACGATCGCTGGGTT
ACCATCGCCGACGCTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig56788:1..2368+

>mRNA_H-elongata_contig56788.13128.1 ID=mRNA_H-elongata_contig56788.13128.1|Name=mRNA_H-elongata_contig56788.13128.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1788bp|location=Sequence derived from alignment at H-elongata_contig56788:1..2368+ (Himanthalia elongata Himel1 dioecious)
ATTTCGATAAGAGGCTTGAAGGGTATTTCTGAACACGAAATGAAGCAGTT
TCTGGAGGAGGAATCGGGGGTGGTTCCCGTGAGTGTACGGGTCTTGCCCG
ACAACCCCGTCCGAAACCAGAGTGGGCTTGCGTTCGCAGAATTCGAAACC
CCGGAGCAGGCCACGAAGATTTCGATAAGAGGCTTGAAGGGTATTTCTGA
ACACGAAATGAAGCAGTTTCTGGAGGAGGAATCGGGGGTGGTTCCCGTGA
GTGTACGGGTCTTGCCCGACAACCCCGTCCGAAACCAGAGTGGGCTTGCG
TTCGCAGAATTCGAAACCCCGGAGCAGGCCACGAAGGCGCTCTCCCTGGA
CGGTATGAACATCATGAGTCGGTGGATTGATGTGTCGCTGCACATGTCGA
AGAAGCGGGTCAAGGGACCTCGCGCGGGTGTGGATTCCAGCCCTCCGTTC
GGCGAGAACGCCAAGGACGGAATAATAATGGTGTTGAAGGGACTGCCGTT
CTCGCTTTTAGATGACGAGGCGAGTACGGCGCTCTCCCTGGACGGTATGA
ACATCATGAGTCGGTGGATTGATGTGTCGCTGCACATGTCGAAGAAGCGG
GTCAAGGGACCTCGCGCGGGTGTGGATTCCAGCCCTCCGTTCGGCGAGAA
CGCCAAGGACGGAATAATAATGGTGTTGAAGGGACTGCCGTTCTCGCTTT
TAGATGACGAGGCGAGTACGATCAAGGCGTTCCTTTTGCAGTACGATATC
TCCGAAGACGACATCTTGCAGATGAAGGTACCGAAGCACAACAACACGAT
CTCCAACACGGGCATGGCGTTTCTGTCCCTGAAGGACGAGGAGGCCGCCC
AGAAGGTCATAGCCCTCAAGGGGACTTACATCGGCAACAGATCAAGGCGT
TCCTTTTGCAGTACGATATCTCCGAAGACGACATCTTGCAGATGAAGGTA
CCGAAGCACAACAACACGATCTCCAACACGGGCATGGCGTTTCTGTCCCT
GAAGGACGAGGAGGCCGCCCAGAAGGTCATAGCCCTCAAGGGGACTTACA
TCGGCAACAGATGGGTAGATGTCTCGCGGTGGGGCGACGGGGCGAAGACG
CCGAGAATGTCCCACAAGGCGGCCATCGAAAGCGCGCGCACCACGGTGCC
CGCTGCGCTAAGGAAAAAATACCCCGACCTTCCGTGTGTTGTGGTCTCGG
GTCTCCCCTTCCACAAGACGAAGAATGAAATAAGATGGGTAGATGTCTCG
CGGTGGGGCGACGGGGCGAAGACGCCGAGAATGTCCCACAAGGCGGCCAT
CGAAAGCGCGCGCACCACGGTGCCCGCTGCGCTAAGGAAAAAATACCCCG
ACCTTCCGTGTGTTGTGGTCTCGGGTCTCCCCTTCCACAAGACGAAGAAT
GAAATAAGTGAGTACTTTATTGAGCAAGGCATCCCCCAGGCCGCTGTGGA
GGAGATGCAGATGCCGCTGTTCCTCTCCACTCCAAACAACACAGGCGCCT
GTTGGCTCGTTATCAATGAGGCAATGAGTACTTTATTGAGCAAGGCATCC
CCCAGGCCGCTGTGGAGGAGATGCAGATGCCGCTGTTCCTCTCCACTCCA
AACAACACAGGCGCCTGTTGGCTCGTTATCAATGAGGCAAAGGCTTACAA
CCGCATCATGTCGTTGAACGGGGCCATCATCGACGATCGCTGGGTTACCA
TCGCCGACGCTTAAAGGCTTACAACCGCATCATGTCGTTGAACGGGGCCA
TCATCGACGATCGCTGGGTTACCATCGCCGACGCTTAA
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