prot_H-elongata_contig56788.13128.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig56788.13128.1
Unique Nameprot_H-elongata_contig56788.13128.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length298
Homology
BLAST of mRNA_H-elongata_contig56788.13128.1 vs. uniprot
Match: D7FVS6_ECTSI (G-rich sequence factor 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVS6_ECTSI)

HSP 1 Score: 300 bits (767), Expect = 1.640e-95
Identity = 146/298 (48.99%), Postives = 208/298 (69.80%), Query Frame = 0
Query:    1 ISIRGLKGISEHEMKQFLEEESGVVPVSVRVLPDNPVRNQSGLAFAEFETPEQATKALSLDGMNIMSRWIDVSLHMSKKRVKGPRAGVDSSPPFGENAKDGIIMVLKGLPFSLLDDEASTIKAFLLQYDISEDDILQMKVPKHNNTISNTGMAFLSLKDEEAAQKVIALKGTYIGNRWVDVSRWGDGAK-TPRMSHKAAIESARTTVPAALRKKYPDLPCVVVSGLPFHKTKNEISEYFIEQGIPQAAVEEMQMPLFLSTPNNTGACWLVINEAKAYNRIMSLNGAIIDDRWVTIADA 297
            I+I+GL+G  E E+    EE  G  PV V+++ +NP R++ GLAF +FE P+ A  AL LDG NI ++W+DVSLH+ K+     R G  S PPFG +  D ++++LKGLPFSLL+DE   IKAF+L ++I+ED+I+ + VPK N T  NTG+A +  K +E+  + + LKGT+IG RWVDVSRW +  K   R SH+  +E  R+ V  +L++K+P LP V +SGLPFHKT+ E+ E+    G+P++A+ E++MPLFL T NNTG CW+VI++  AY  +M LNGA +DDRW+T+ DA
Sbjct:  211 ITIKGLQGFPESEVVAIFEEAVGAAPVEVKIV-ENPNRSR-GLAFIKFEMPDLARAALHLDGTNIQNQWVDVSLHVMKQSSNEFRLGTGSQPPFGPDVPDEMVVMLKGLPFSLLEDE---IKAFILNHEIAEDEIVAINVPKFNETQFNTGIAMIHFKSDESVARALELKGTHIGERWVDVSRWNERNKPNQRKSHRDQMEETRSAVKTSLKEKHPSLPVVSISGLPFHKTEEEVIEFLEASGVPRSAMLEVEMPLFLQTQNNTGTCWVVISDEGAYETLMELNGATLDDRWLTVVDA 503          
BLAST of mRNA_H-elongata_contig56788.13128.1 vs. uniprot
Match: A0A6H5KVQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVQ1_9PHAE)

HSP 1 Score: 280 bits (716), Expect = 4.740e-88
Identity = 139/273 (50.92%), Postives = 192/273 (70.33%), Query Frame = 0
Query:    1 ISIRGLKGISEHEMKQFLEEESGVVPVSVRVLPDNPVRNQSGLAFAEFETPEQATKALSLDGMNIMSRWIDVSLHMSKKRVKGPRAGVDSSPPFGENAKDGIIMVLKGLPFSLLDDEASTIKAFLLQYDISEDDILQMKVPKHNNTISNTGMAFLSLKDEEAAQKVIALKGTYIGNRWVDVSRWGDGAK-TPRMSHKAAIESARTTVPAALRKKYPDLPCVVVSGLPFHKTKNEISEYFIEQGIPQAAVEEMQMPLFLSTPNNTGACWLVINE 272
            ++I+GL G  E E+    EE  G  PV V ++ +NP R++ GLAF +FETP+ A  AL LDG NI ++W+DVSLH+ K+  K  R G  S PPFG +  D ++++LKGLPFSLLDDE   IKAF+L +DI+ED+I+ M VPK N T  NTG+A +  K +E+  + + LKGTYIG RWVDVSRW D  K   + SH+  +E  R+ V A+L++K+P LP V +SGLPFHKT+ E+ E+    G+P++A+ E++MPLFL T NNTGACW+VI++
Sbjct:  211 VTIKGLHGFPEGEVVAIFEEAVGAAPVEVNII-ENPNRSR-GLAFVKFETPDLARAALHLDGSNIQNQWVDVSLHVMKQTSKEFRLGSGSQPPFGPDVPDEMVVMLKGLPFSLLDDE---IKAFILNHDIAEDEIVAMSVPKFNETQFNTGIAMIHFKSDESVARALELKGTYIGERWVDVSRWNDRNKPNQKKSHRQQMEETRSAVQASLKEKHPSLPVVSISGLPFHKTEEEVIEFLEASGVPRSAMLEVEMPLFLQTQNNTGACWVVISD 478          
BLAST of mRNA_H-elongata_contig56788.13128.1 vs. uniprot
Match: A0A0D9X580_9ORYZ (Uncharacterized protein n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9X580_9ORYZ)

HSP 1 Score: 65.5 bits (158), Expect = 3.040e-8
Identity = 49/177 (27.68%), Postives = 87/177 (49.15%), Query Frame = 0
Query:    9 ISEHEMKQFLEEESGVVPVSVRVLPDNPVRNQSGLAFAEFETPEQATKALSLDGMNIMSRWIDVSLHMSKKRVKGPRAGVDSSPPFGENAKDGIIMVLKGLPFSLLDDEASTIKAFLLQYDISEDDILQMKVPKHNNTISNTGMAFLSLKDEEAAQKVIALKGTYIG--NRWVDVSR 183
            I   ++K+F +E + V  V +    D   R   G    EF +PE A KAL ++G ++M R   V L ++++R        + +  F +  + G  + +KG   SL   E S IK  L  +     +I ++ VP    T ++ G+A++  KD+ +  K + L G+ +G  N +VD ++
Sbjct:  353 IDSDQVKEFFQEVAEVADVRLATHEDGTPR---GFGHVEFASPEDAKKALEMNGKDLMGR--QVRLDLARERGAYTPQSRNGAGSFQKQNRGGQSIFIKGFDSSL---EESKIKESLEGHFAECGEITRVSVPMDRETGASKGIAYIDFKDQASFSKALELSGSDLGGYNLYVDEAK 521          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56788.13128.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FVS6_ECTSI1.640e-9548.99G-rich sequence factor 1 n=1 Tax=Ectocarpus silicu... [more]
A0A6H5KVQ1_9PHAE4.740e-8850.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0D9X580_9ORYZ3.040e-827.68Uncharacterized protein n=1 Tax=Leersia perrieri T... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 103..182
e-value: 0.059
score: 17.6
coord: 1..73
e-value: 0.025
score: 20.8
coord: 219..295
e-value: 0.76
score: 7.6
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 134..177
e-value: 2.3E-4
score: 20.9
coord: 8..68
e-value: 8.7E-8
score: 31.9
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 1..77
score: 10.548
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 90..205
e-value: 1.8E-9
score: 39.3
coord: 3..86
e-value: 2.6E-10
score: 42.0
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 209..297
e-value: 1.2E-5
score: 27.2
NoneNo IPR availablePANTHERPTHR13976HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATEDcoord: 90..183
coord: 9..73
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 214..294
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 101..189
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 9..83

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56788contigH-elongata_contig56788:1..2368 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56788.13128.1mRNA_H-elongata_contig56788.13128.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig56788 1..2368 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig56788.13128.1 ID=prot_H-elongata_contig56788.13128.1|Name=mRNA_H-elongata_contig56788.13128.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=298bp
ISIRGLKGISEHEMKQFLEEESGVVPVSVRVLPDNPVRNQSGLAFAEFET
PEQATKALSLDGMNIMSRWIDVSLHMSKKRVKGPRAGVDSSPPFGENAKD
GIIMVLKGLPFSLLDDEASTIKAFLLQYDISEDDILQMKVPKHNNTISNT
GMAFLSLKDEEAAQKVIALKGTYIGNRWVDVSRWGDGAKTPRMSHKAAIE
SARTTVPAALRKKYPDLPCVVVSGLPFHKTKNEISEYFIEQGIPQAAVEE
MQMPLFLSTPNNTGACWLVINEAKAYNRIMSLNGAIIDDRWVTIADA*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf