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Homology
BLAST of mRNA_H-elongata_contig56731.13123.1 vs. uniprot
Match: A0A6H5JCN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCN9_9PHAE) HSP 1 Score: 77.4 bits (189), Expect = 2.080e-12 Identity = 51/124 (41.13%), Postives = 69/124 (55.65%), Query Frame = 1
Query: 94 GAAVLEETAFSFTGAVALSAFCCCSTMSFVALCIKFITWMWGNRQRRPRVVIQNCYTHNGHNSEQRMYEVVGVNATRNIDHDTELRKGVGAVAISEVELREMP-QTLEKQR----SCNWDTDIV 450
G L ETA SFTG +++ FCCCSTMS VALCIK +WM+G+R RR RV + N +E+++Y + E R G + SE+ELR++P LE QR S + D D+V
Sbjct: 9 GGGGLRETALSFTGIISIITFCCCSTMSCVALCIKLASWMFGHRGRRQRVPLLPHEQQNDGEAEEQLYSPHHQPVIILDTNSAEKRSGY-TLHASEIELRQVPFGNLEAQRETKNSDDGDDDVV 131
BLAST of mRNA_H-elongata_contig56731.13123.1 vs. uniprot
Match: D7FQF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQF6_ECTSI) HSP 1 Score: 75.1 bits (183), Expect = 1.260e-11 Identity = 48/111 (43.24%), Postives = 63/111 (56.76%), Query Frame = 1
Query: 94 GAAVLEETAFSFTGAVALSAFCCCSTMSFVALCIKFITWMWGNRQRRPRVVIQNCYTHNGHNSEQRMYEVVGVNATRNIDHDTELRKGVGAVAISEVELREMP-QTLEKQR 423
G L ETA SFTG V++ FCCCSTMS VALCIK +WM+G+R RR RV + N +E+++Y + E R G + SE+ELR++P LE QR
Sbjct: 9 GGGGLRETALSFTGIVSIITFCCCSTMSCVALCIKLASWMFGHRGRRQRVPLLPHEQQNDGEAEEQLYYPHQQPVIILDTNPAEQRSGC-TLRASEIELRQVPFGNLEAQR 118
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-01_006310.1 |
| Exons | 2 |
| Model size | 1929 |
| Cds size | 375 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622930922.45873-UTR-H-elongata_contig56731:267..1740 | 1622930922.45873-UTR-H-elongata_contig56731:267..1740 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig56731 268..1740 - |
| 1691679626.06787-UTR-H-elongata_contig56731:267..1740 | 1691679626.06787-UTR-H-elongata_contig56731:267..1740 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig56731 268..1740 - |
| 1622930922.5037374-UTR-H-elongata_contig56731:2568..2649 | 1622930922.5037374-UTR-H-elongata_contig56731:2568..2649 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig56731 2569..2649 - |
| 1691679626.0995255-UTR-H-elongata_contig56731:2568..2649 | 1691679626.0995255-UTR-H-elongata_contig56731:2568..2649 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig56731 2569..2649 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622930922.476285-CDS-H-elongata_contig56731:1740..2106 | 1622930922.476285-CDS-H-elongata_contig56731:1740..2106 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig56731 1741..2106 - |
| 1691679626.0775893-CDS-H-elongata_contig56731:1740..2106 | 1691679626.0775893-CDS-H-elongata_contig56731:1740..2106 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig56731 1741..2106 - |
| 1622930922.4886365-CDS-H-elongata_contig56731:2559..2568 | 1622930922.4886365-CDS-H-elongata_contig56731:2559..2568 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig56731 2560..2568 - |
| 1691679626.0893362-CDS-H-elongata_contig56731:2559..2568 | 1691679626.0893362-CDS-H-elongata_contig56731:2559..2568 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig56731 2560..2568 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig56731.13123.1 >prot_H-elongata_contig56731.13123.1 ID=prot_H-elongata_contig56731.13123.1|Name=mRNA_H-elongata_contig56731.13123.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=125bp
MVKDGAAVLEETAFSFTGAVALSAFCCCSTMSFVALCIKFITWMWGNRQR
RPRVVIQNCYTHNGHNSEQRMYEVVGVNATRNIDHDTELRKGVGAVAISE
VELREMPQTLEKQRSCNWDTDIVV* back to topmRNA from alignment at H-elongata_contig56731:268..2649- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig56731.13123.1 ID=mRNA_H-elongata_contig56731.13123.1|Name=mRNA_H-elongata_contig56731.13123.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2382bp|location=Sequence derived from alignment at H-elongata_contig56731:268..2649- (Himanthalia elongata Himel1 dioecious)
CCCGAGGTGACCACCACATCCTGTGCCCTATCCCTGTCCCACCTCGCCAA
ATGCAAGACACATGCGTGATAGAACCAAGTAATGGTCAAGGTGAAACAAT
CTTTGGCTTGCGGGAGCGTTGTCGCAGCCCCCGATTTCCAATGAGATTCT
GAATCTTCGTTCCTCCTTGCTGTTTGATGCCTCGATAATTGGTACAGTGC
TTCTTTGGATATATATTCCTTTTTATTTTACGGTTACCCCCTCCGATCGC
TGTGATTATTATGGTCTCGAGCAGGACTGACCTCGAGTGTTTCAATCGTT
TTTCGCGGTGCACGGACCGGAGCGTTTCGAATCTGTATGTACGGTTAGTG
CGATATATCTGATATCAAGCTATCTAAGCGATTGCGCCTTAGCATTCAAG
GTCTCTTGTTATATACTACGTATACACTATAATACTACCCGCCGTTCTAT
AGAATCAGTGCACACTATTTTTTCTGCATTTCTCTGTTCTAAAATATCAA
TGCTTTTTCTGCTGGGTATGTTCGCATTCCTGCCCGTGACCAGGATGGAG
CTGCGGTGCTCGAGGAGACAGCGTTCTCCTTCACTGGTGCCGTCGCGCTC
AGTGCTTTCTGTTGCTGCAGTACTATGTCGTTTGTTGCGCTCTGCATAAA
GTTCATCACGTGGATGTGGGGGAACCGCCAGAGAAGACCGAGGGTGGTGA
TCCAGAATTGTTACACGCATAACGGTCACAACAGCGAACAGCGGATGTAC
GAAGTGGTCGGTGTCAACGCCACCCGCAACATCGACCATGACACTGAGCT
GCGCAAAGGTGTTGGTGCCGTAGCCATATCAGAAGTCGAACTGCGCGAAA
TGCCTCAAACCTTGGAGAAACAGCGGTCCTGTAACTGGGATACAGATATT
GTAGTTTAGAAGTGTCACTCCGACTGGATTTCTGCTGCAGCTTTCATACG
GCAGCCATGGCGCGTACAATCCCCGGGGTGCTTAGACGTACAGGTATAAG
TCAAATCGATCCTCCTTTTATTAAGCATGTAATGTATGCCATAATTGTTG
ACAGGCGGTCGAACCAGCGGCTGCACCATCGATATGATGGGCCTCGATCG
GGCTTTGTGAAAGATTTATCTCAACAACCACGTTTTTTACTATTTCCCCC
GTATTCAGGAAACAAAAAACAAAAAACGGTACGGTACACAGTACTCCGGA
ATGACGTGTCATGCCGGTTTGCGCGGTCTAATGCAAATTGAGAGAAAGGA
AAGGGGAGCGAACGTTCTTGGAAGCACAACGATCGGTGGTTGCCTTGATT
TGACCATTCTTGTGGATGTTAGATTTGTTTGATTGAACTCATATGTTTTT
AGAAGAAAAAACAACAACACAGAGTATAGGGCGTAAATCGTAACAGACAC
TGGGTTTCCAACCGCGTGCTATGGTTTTCGATGGAACATCGTTGATTGGT
TCGAATACCCAACCAGGCCAATTTCGATCGGTTACCGTTACAATGTTGGG
GTTTTCATACTCGTATCGAGACGAGATGAATGCCGATATGTTGCGGCTTC
CCTTATTTCACGTGAACGCCGTACGCGCCAGATGGCTCAAATCTTGGTGG
CTGTTTTTGCTTTGTTTCCTTTTGTTTGGAAAACAATCGATTTTGATGGC
GATTCTCTTTTGAAGCGTATTCATTCGTGGAATACTTTTGATCGAACTTT
AAATTATCGACCATGGAGGGTTTGAGGGAGGTTAGCCGTGGGCAGGGGTG
GAGAGATTATTTTAGACTAGTTGTTGGGAAGTCCAGCGCCGTCCATGAGT
GGAGTAGTGAGCTAGAAGAATGGCCGTGGGCTGGAGTCGAGGGAGAAGAA
TCAGAGCGCCGCTGGCAGTAATACTTTCTTTCCAATGGCGGGGTGTTATT
TAAAATAGATTTCATACTTGACATTAAAAAGTTCTTGTAAATAGTCCATC
CAGTAGATGAGTGACTCCAAGGAGGACACTGTCAGCAGCAGGGCTTTAGC
GAAGGCATTGCAGATGGACGTCCCCTCGACGAGCCCCTGCATTTGTCTTT
ATCGCTGGAGTGGTGATGTAGCTAGGATTCACGTAGACCGCGCGGAAATT
AATTGTAGAGCTCGGACATCAGCAAGCAGCTGGATGTATTCTGAATTCCG
GATCGCAAAACGTTGAAGCCCGCGCAAGTAAAATTGTCGTTTGCGTGCGG
AACATTTTCGGAGAGTGCCAAACATCGCTGCCAGCAGCGCTATGAGCCTC
CGTTTTGGACGTAGATCTACAATGGTCGCAGGGGATGGGGCGCGTTGCAG
CAGGCCGGTTGTTAACCTAGCGCTGTAGCGCGTTGATTGACCCCGCCAAA
AAGCGAGAAAAACAAGGATACGTGGACTGTGT back to topCoding sequence (CDS) from alignment at H-elongata_contig56731:268..2649- >mRNA_H-elongata_contig56731.13123.1 ID=mRNA_H-elongata_contig56731.13123.1|Name=mRNA_H-elongata_contig56731.13123.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=750bp|location=Sequence derived from alignment at H-elongata_contig56731:268..2649- (Himanthalia elongata Himel1 dioecious)
ATGGTCAAGATGGTCAAGGATGGAGCTGCGGTGCTCGAGGAGACAGCGTT
CTCCTTCACTGGTGCCGTCGCGCTCAGTGCTTTCTGTTGCTGCAGTACTA
TGTCGTTTGTTGCGCTCTGCATAAAGTTCATCACGTGGATGTGGGGGAAC
CGCCAGAGAAGACCGAGGGTGGTGATCCAGAATTGTTACACGCATAACGG
TCACAACAGCGAACAGCGGATGTACGAAGTGGTCGGTGTCAACGCCACCC
GCAACATCGACCATGACACTGAGCTGCGCAAAGGTGTTGGTGCCGTAGCC
ATATCAGAAGTCGAACTGCGCGAAATGCCTCAAACCTTGGAGAAACAGCG
GTCCTGTAACTGGGATACAGATATTGTAGTTTAGGATGGAGCTGCGGTGC
TCGAGGAGACAGCGTTCTCCTTCACTGGTGCCGTCGCGCTCAGTGCTTTC
TGTTGCTGCAGTACTATGTCGTTTGTTGCGCTCTGCATAAAGTTCATCAC
GTGGATGTGGGGGAACCGCCAGAGAAGACCGAGGGTGGTGATCCAGAATT
GTTACACGCATAACGGTCACAACAGCGAACAGCGGATGTACGAAGTGGTC
GGTGTCAACGCCACCCGCAACATCGACCATGACACTGAGCTGCGCAAAGG
TGTTGGTGCCGTAGCCATATCAGAAGTCGAACTGCGCGAAATGCCTCAAA
CCTTGGAGAAACAGCGGTCCTGTAACTGGGATACAGATATTGTAGTTTAG back to top
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