mRNA_H-elongata_contig56424.13088.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig56424.13088.1 vs. uniprot
Match: A0A6H5KV09_9PHAE (GH16 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KV09_9PHAE) HSP 1 Score: 192 bits (489), Expect = 4.560e-54 Identity = 90/174 (51.72%), Postives = 114/174 (65.52%), Query Frame = 1
Query: 1 MFNEPWAIPGYIEAEYYDLGGAGVDFHETTSSSNVEHSTLRMPDGVDVIEAESNPSHGHHVGNWDAGEWLAFTSRTEQGGYWNVEASIAS-----------------------DGYDGLGRQGVDLLGGPLSLAATGSWEAFEHPLKEDVWVPEGDHRVLFCADTGMFNLDYLR 453
M+ +PW IPG+IEAEYYD GG GV F++ + STLR+PD V V EA+SNP +GH+VG W GEW+AFT+R ++ +W+V AS+AS DG +GLG GVDLL GPL TGSWEAFE KE+V+VPEG HRVLFCAD G+FN+++LR
Sbjct: 463 MYGDPWVIPGFIEAEYYDYGGNGVSFYKNSPELFYGDSTLRLPDAVGVYEADSNPYNGHYVGYWSTGEWVAFTARADEAAFWDVGASVASGLDGTTVQFRILVNATNCSSAATDGLNGLGDTGVDLLNGPLFAGYTGSWEAFEMVYKEEVYVPEGTHRVLFCADDGIFNMNFLR 636
BLAST of mRNA_H-elongata_contig56424.13088.1 vs. uniprot
Match: A0A537LUF1_9BACT (Carbohydrate-binding protein n=2 Tax=Terrabacteria group bacterium ANGP1 TaxID=2569760 RepID=A0A537LUF1_9BACT) HSP 1 Score: 86.7 bits (213), Expect = 6.820e-17 Identity = 52/150 (34.67%), Postives = 76/150 (50.67%), Query Frame = 1
Query: 13 PWAIPGYIEAEYYDLGGAGVDFHETTSSSNVEHSTLRMPDGVDVIEAESNPSHGHHV-GNWDAGEWLAFTSRTEQGGYWNVEASIASDGYDGLGRQGVD--LLGGPLSLAATGSWEAFEHPLKEDVWVPEGDHRVLFCADTGMFNLDYLR 453
PWAIPG ++AE +D+GG GV +H+TT + + RM VD+I +G +V N+ GEWL +T G + +E ++S R +D + G LS+ TGSW F+ V + G H + AD FNLD +R
Sbjct: 746 PWAIPGVVQAENFDVGGEGVAYHDTTPGN--QGGQYRMDVDVDIIA-----DNGRYVINNFQTGEWLEYTINVTATGVYRIEVLVSSQFSASRFRMALDGQNVTGSLSVPNTGSWHTFQWVGASGVGLTMGLHVLRVYADQQYFNLDAIR 888
BLAST of mRNA_H-elongata_contig56424.13088.1 vs. uniprot
Match: UPI0015EF858A (glycosyl hydrolase n=1 Tax=Halorhabdus sp. FL145 TaxID=2750670 RepID=UPI0015EF858A) HSP 1 Score: 85.5 bits (210), Expect = 1.780e-16 Identity = 54/150 (36.00%), Postives = 78/150 (52.00%), Query Frame = 1
Query: 22 IPGYIEAEYYDLGGAGVDFHETTSSSNVEHSTLRMPDGVDVIEAESNPSHGHHVGNWDAGEWLAFTSRTEQGGYWNVEASIASDGYDGLGRQGVDLLG----GPLSLAATGSWEAF-EHPLKEDVWVPEGDHRVLFCADTGMFNLDYLRF 456
IPG IEAEY+D GG GV +HET+ ++ P VD+ EA + +G GEWL ++ E +++ S+AS +G G +++ G G + + TGSW + E E V + EGDH V AD G +N DY+RF
Sbjct: 1033 IPGQIEAEYFDEGGEGVSYHETSENNQAGADYRDHP--VDIGEASGG---NYTIGYIPGGEWLEYSVTVESTAEYDIIVSVAS--AEGGGPVHIEVDGEDVTGSIDVPNTGSWTGYTEVTGAEGVELEEGDHIVRVVADGGAWNFDYMRF 1175
BLAST of mRNA_H-elongata_contig56424.13088.1 vs. uniprot
Match: UPI00178C79D5 (DUF5010 C-terminal domain-containing protein n=1 Tax=Halorubrum sp. T3 TaxID=1194088 RepID=UPI00178C79D5) HSP 1 Score: 83.2 bits (204), Expect = 9.950e-16 Identity = 51/153 (33.33%), Postives = 83/153 (54.25%), Query Frame = 1
Query: 4 FNEPWAIPGYIEAEYYDLGGAGVDFHETTSSSNVEHSTLRMPDGVDVIEAESNPSHGHHVGNWDAGEWLAFTSRTEQGGYWNVEASIASDGYDGLGRQGVDLLG-GPLSLAATGSWEAFEHPLKEDVWVPEGDHRVLFC-ADTGMFNLDYLRF 456
++E W +PG IEAE YD GGAGV + +TT + + DG IEA S+ G+++ DAGEW +T ++ G Y +++ +AS+ +G R +D G + + TG W+ ++ D+ + E D VL A G +NL+++ F
Sbjct: 180 YDEQWNLPGKIEAEDYDTGGAGVAYSDTTDQNMGGYR-----DGAVDIEATSDDGGGYNIAWTDAGEWTEYTVGSDAGTY-DIDLRVASNRGEGKIRVSLDGTALGTVDIPQTGGWQNWQTVTVPDIELDETDGSVLRIEAVEGGYNLNWIEF 326
BLAST of mRNA_H-elongata_contig56424.13088.1 vs. uniprot
Match: UPI0016822ED7 (carbohydrate-binding protein n=1 Tax=Paenibacillus sp. IB182493 TaxID=2772299 RepID=UPI0016822ED7) HSP 1 Score: 80.1 bits (196), Expect = 1.350e-14 Identity = 50/161 (31.06%), Postives = 81/161 (50.31%), Query Frame = 1
Query: 4 FNEPWAIPGYIEAEYYDLGGAGVDFHETTSSSNVEHSTLRMPDGV------DVIEAESNPS-HGHHVGNWDAGEWLAFTSRTEQGGYWNVEASIASDGYDGLGRQ--GVDL-LGGPLSLAATGSWEAFEHPLKEDVWVPEGDHRVLFCADTGMFNLDYLRF 456
F+ P A+PG IEA +Y+ GG GV +H+ R PD + D ++ +N + +G +VG AGEWL + ++ G + VE + A+ D R G D L GP+++ +TG+W + ++PEG+H + F G F+ L+F
Sbjct: 661 FDLPKAVPGIIEAPFYNTGGEGVGYHD------------RTPDNIGGAYRSDSVDIRTNANFNGLNVGWNQAGEWLKYNVDVKRAGTYRVEITAATTFTDNQARLWLGDDTDLTGPVNIPSTGNWNTWLTTPSPSFYLPEGEHTIRFETVKGEFDFARLKF 809
BLAST of mRNA_H-elongata_contig56424.13088.1 vs. uniprot
Match: A0A7M2X2X7_9BACT (Carbohydrate-binding protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7M2X2X7_9BACT) HSP 1 Score: 79.7 bits (195), Expect = 1.840e-14 Identity = 47/140 (33.57%), Postives = 71/140 (50.71%), Query Frame = 1
Query: 13 PWAIPGYIEAEYYDLGGAGVDFHETTSSSNVEHSTLRMPDGVDVIEAESNPSHGHHVGNWDAGEWLAFTSRTEQGGYWNVEASIASDGYDGLGRQGVDLL--GGPLSLAATGSWEAFEHPLKEDVWVPEGDHRVLFCADT 426
PWA+PG I+ E +D GGAG+ + ++ +NV S GVD IE + G +G+ AGEWL +T G +N+ AS G VD + GG L+L +TG W+ ++ + +P G H + F D+
Sbjct: 514 PWALPGTIQFENFDEGGAGISYQDS-DPTNVGGSYRST--GVD-IEPSGDTDSGFALGHVTAGEWLEYTVNIASAGQYNLGVRFASSNLGGSAHLEVDGVQTGGSLALTSTGGWQTWQTFALNGLTLPAGQHVLRFSLDS 649
BLAST of mRNA_H-elongata_contig56424.13088.1 vs. uniprot
Match: A0A7V9SIJ1_9BACT (Carbohydrate-binding protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7V9SIJ1_9BACT) HSP 1 Score: 78.6 bits (192), Expect = 4.390e-14 Identity = 54/157 (34.39%), Postives = 82/157 (52.23%), Query Frame = 1
Query: 7 NEPWAIPGYIEAEYYDLGGAGVDFHETTSSSNVEHSTLRMPDGVDVIEAESNPSHGHHVGNWDAGEWLAFTSRTEQGGYWNVEASIASDGYDG---LGRQGVDLLGGPLSLAATGSWEAFEHPLKEDVWVPEGDH----RVLFCADTGMF-NLDYLR 453
P +PG I+AE +D GGA V + +TTS ++ + R D VD IE S+ G++VG AGEWL +T G + +EA +A+ G G + GVD+ G P+++ TG W+ + K V + G ++ TG+ NL+YLR
Sbjct: 107 GSPIGLPGTIQAENFDEGGASVAYVDTTSGNS--GAQYRSTD-VD-IEGTSDTGGGYNVGWMAAGEWLKYTVNVTTAGTYTIEARVAASGNGGTFHVEANGVDITG-PMTVPNTGGWQTWTTVSKTGVALSAGQQVWTVKIDAAGSTGIVGNLNYLR 258
BLAST of mRNA_H-elongata_contig56424.13088.1 vs. uniprot
Match: Q21GD0_SACD2 (Putative retaining b-glycosidase n=2 Tax=Saccharophagus degradans TaxID=86304 RepID=Q21GD0_SACD2) HSP 1 Score: 78.6 bits (192), Expect = 4.550e-14 Identity = 53/145 (36.55%), Postives = 77/145 (53.10%), Query Frame = 1
Query: 22 IPGYIEAEYYDLGGAGVDFHETTSSSNVEHSTLRMPDGVDVIEAESNPSHGHHVGNWDAGEWLAFTSRTEQGGYWNV---EASIASDGYDGLGRQGVDLLGGPLSLA-ATGSWEAFEHPLKEDVWVPEGDHRVLFCADTGMFNLD 444
IPG +EAE+YDLGGAG + + ++ +N LR D VD IEA +N G+H+G DAGEWL ++ QG ++V AS +S G G + P+ + ATG W+ F L + + G+ + D G FN+D
Sbjct: 543 IPGLVEAEHYDLGGAGAAYADVSTGNN--GGVLRADD-VD-IEANAN---GYHIGWLDAGEWLEYSVNVNQGQSFDVLIASASASSGGQFHFEVNGESV--SPILVTPATGGWKTFVSTLHRGLQLNAGEQVLRLVIDGGEFNID 678
BLAST of mRNA_H-elongata_contig56424.13088.1 vs. uniprot
Match: I0BJY1_9BACL (Glycoside hydrolase n=1 Tax=Paenibacillus mucilaginosus K02 TaxID=997761 RepID=I0BJY1_9BACL) HSP 1 Score: 77.8 bits (190), Expect = 8.660e-14 Identity = 48/155 (30.97%), Postives = 75/155 (48.39%), Query Frame = 1
Query: 4 FNEPWAIPGYIEAEYYDLGGAGVDFHETTSSSNVEHSTLRMPDGVDVIEAESNPSHGHHVGNWDAGEWLAFTSRTEQGGYWNVEASIASDGYDGLGR----QGVDLLGGPLSLAATGSWEAFEHPLKEDVWVPEGDHRVLFCADTGMFNLDYLRF 456
+N +PG +EA YY+ GG G+ +HET S N+ LR D ++ +N +GH+VG GEWL + ++ G +N E + A+ R G DL G + L +G W + KE V++P+G H + G ++ L F
Sbjct: 681 YNAYKPLPGIVEAPYYNDGGEGIGYHET-SPENIG-GALRG----DAVDVRTNSFNGHNVGWNQTGEWLKYNVEVKEAGLYNFELTTATTMNATQARLWLEDGTDLTG-VMDLPTSGDWNRWVTAKKEGVYLPQGKHTLKLETVHGEYDFARLAF 828
BLAST of mRNA_H-elongata_contig56424.13088.1 vs. uniprot
Match: A0A5R9G639_9BACL (Carbohydrate-binding protein n=1 Tax=Paenibacillus antri TaxID=2582848 RepID=A0A5R9G639_9BACL) HSP 1 Score: 76.6 bits (187), Expect = 2.190e-13 Identity = 44/149 (29.53%), Postives = 76/149 (51.01%), Query Frame = 1
Query: 22 IPGYIEAEYYDLGGAGVDFHETTSSSNVEHSTLRMPDGVDVIEAESNPSH-GHHVGNWDAGEWLAFTSRTEQGGYWNVEASIASDGYDGLGRQGVDL---LGGPLSLAATGSWEAFEHPLKEDVWVPEGDHRVLFCADTGMFNLDYLRF 456
+PG +EA +Y+ GG GV +H+TT + + D ++ +N ++ G +VG AGEWL + ++ G + VE + A+ D R ++ L G + + ATG W A++ L ++PEG H + F G ++ L+F
Sbjct: 675 VPGIVEAPFYNTGGEGVGYHDTTPEN------IGGAYRGDSVDIRTNTNYNGLNVGWNRAGEWLKYNVEVKRAGTYRVEVTAATTFADNEARLWLNDTTDLTGAIDIKATGDWNAWKTTLSPSFYLPEGRHTITFETVKGEYDFARLKF 817 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56424.13088.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig56424.13088.1 >prot_H-elongata_contig56424.13088.1 ID=prot_H-elongata_contig56424.13088.1|Name=mRNA_H-elongata_contig56424.13088.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=152bp MFNEPWAIPGYIEAEYYDLGGAGVDFHETTSSSNVEHSTLRMPDGVDVIEback to top mRNA from alignment at H-elongata_contig56424:2250..3471- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig56424.13088.1 ID=mRNA_H-elongata_contig56424.13088.1|Name=mRNA_H-elongata_contig56424.13088.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1222bp|location=Sequence derived from alignment at H-elongata_contig56424:2250..3471- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig56424:2250..3471- >mRNA_H-elongata_contig56424.13088.1 ID=mRNA_H-elongata_contig56424.13088.1|Name=mRNA_H-elongata_contig56424.13088.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=912bp|location=Sequence derived from alignment at H-elongata_contig56424:2250..3471- (Himanthalia elongata Himel1 dioecious)back to top |