mRNA_H-elongata_contig56344.13082.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig56344.13082.1
Unique NamemRNA_H-elongata_contig56344.13082.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig56344.13082.1 vs. uniprot
Match: F6MHT6_SACJA (Carbonic anhydrase n=1 Tax=Saccharina japonica TaxID=88149 RepID=F6MHT6_SACJA)

HSP 1 Score: 131 bits (330), Expect = 1.760e-35
Identity = 60/109 (55.05%), Postives = 85/109 (77.98%), Query Frame = 3 
Query:    3 ADT*TVEESTGFKIEFFPHTCMSDELFFIANERVFEVLFDRYSEQAYLDFNDEQCNLIQIHIHSPSEHAIGGSLRAGKIHWVHIKDGTEAELRVVGVLFDVSEYGTNVE 329
            AD  TV + + ++++F+P+ C SDEL F A+ERV+E+LF   S+  +++F  E+ NL+QIHIHSPSEH IGGS  + +IHWVH+K+GTE +L VVGVLFD ++YG+NVE
Sbjct:   79 ADLETVVKGSAYELKFYPNECKSDELLFQADERVWEILFGGCSDVPHVEFKGERYNLLQIHIHSPSEHMIGGSEHSAEIHWVHVKEGTEDQLLVVGVLFDTTDYGSNVE 187
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BLAST of mRNA_H-elongata_contig56344.13082.1 vs. uniprot
Match: D8LB10_ECTSI (Carbonic anhydrase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB10_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 1.150e-21
Identity = 47/96 (48.96%), Postives = 63/96 (65.62%), Query Frame = 3 
Query:   42 IEFFPHTCMSDELFFIANERVFEVLFDRYSEQAYLDFNDEQCNLIQIHIHSPSEHAIGGSLRAGKIHWVHIKDGTEAELRVVGVLFDVSEYGTNVE 329
            I FFP  C S EL F ++  V++V F   ++  YL +  E  NL+Q HIHSPSEH +GG+  A +IH VH+K  T   L VVG++F+VS+YG NVE
Sbjct:   97 IAFFPSECNSTELVFKSDFAVWQVDFSGCTDAPYLQYQGETYNLLQFHIHSPSEHVLGGAEHAAEIHLVHLKQNTTDGLLVVGIMFEVSDYGQNVE 192
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BLAST of mRNA_H-elongata_contig56344.13082.1 vs. uniprot
Match: A0A872YNN4_SACJA (Carbonic anhydrase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A872YNN4_SACJA)

HSP 1 Score: 93.2 bits (230), Expect = 1.210e-20
Identity = 50/111 (45.05%), Postives = 69/111 (62.16%), Query Frame = 3 
Query:    3 ADT*TVEESTGFKIEFFPHTCMSDELFFIANERVFEVLFDRYSEQAYLDFNDEQCNLIQIHIHSPSEHAIGGSLRAGKIHWVHIKD---GTEAELRVVGVLFDVSEYGTNV 326
            A+  T+ E+T F +E F   C S EL F AN  V+E+ F   +  + L F+  + +L+Q+HIHSPSEH + GSL   +IH VH +D   GTE+EL V+GV  D  E+G NV
Sbjct:   86 ANVGTLVEATEFNLELFGAECASKELDFEANGHVWEIDFSECTSTSNLSFDGGKYSLLQMHIHSPSEHMVAGSLHDAEIHLVHSRDDSDGTESELLVIGVFLDAKEHGWNV 196
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BLAST of mRNA_H-elongata_contig56344.13082.1 vs. uniprot
Match: Q9SMD6_9PHAE (Carbonic anhydrase alpha type (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q9SMD6_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 3.090e-8
Identity = 24/40 (60.00%), Postives = 32/40 (80.00%), Query Frame = 3 
Query:  210 IGGSLRAGKIHWVHIKDGTEAELRVVGVLFDVSEYGTNVE 329
            IGGS    +IHWVH+K GT+ +L V+GVLFD ++YG+NVE
Sbjct:    2 IGGSEHEAEIHWVHVKAGTDDQLLVIGVLFDTTQYGSNVE 41
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BLAST of mRNA_H-elongata_contig56344.13082.1 vs. uniprot
Match: A0A7S3XQ34_HETAK (Carbonic anhydrase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQ34_HETAK)

HSP 1 Score: 55.8 bits (133), Expect = 7.150e-7
Identity = 31/82 (37.80%), Postives = 43/82 (52.44%), Query Frame = 3 
Query:   78 LFFIANERVFEVLFDRYSEQAYLDFNDEQCNLIQIHIHSPSEHAIGGSLRAGKIHWVHIKDGTEAELRVVGVLFDVSEYGTN 323
            ++ I N   ++V      +  Y  +      LIQ H HSPSE+ IGG     ++H VH     E EL V+GV+FDV +YG N
Sbjct:  139 VYLIDNYHTWKVDMTSCDDAYYATWKGTDYYLIQFHFHSPSENTIGGGYFDAEMHLVHAS--AEGELLVIGVMFDVVDYGGN 218
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BLAST of mRNA_H-elongata_contig56344.13082.1 vs. uniprot
Match: H6WB77_VAULI (Carbonic anhydrase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB77_VAULI)

HSP 1 Score: 55.5 bits (132), Expect = 8.970e-7
Identity = 34/89 (38.20%), Postives = 47/89 (52.81%), Query Frame = 3 
Query:   63 CMSDELFFIANERVFEVLFDRYSEQA-YLDFNDEQCNLIQIHIHSPSEHAIGGSLRAGKIHWVHIKDGTEAELRVVGVLFDVSEYGTNV 326
            CM D+L + A+ + + V FD Y +    +  N    NL+Q H+HS SEH IGG     +IH+VH        L VVGV+  +S    NV
Sbjct:   44 CMLDDLDYKADGKGWTVTFDGYCQTTPTITINGAVFNLLQFHLHSVSEHVIGGGYYDAEIHFVHYSALDPTSLAVVGVM--ISSTSDNV 130
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BLAST of mRNA_H-elongata_contig56344.13082.1 vs. uniprot
Match: H6WB76_VAULI (Carbonic anhydrase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB76_VAULI)

HSP 1 Score: 55.1 bits (131), Expect = 1.560e-6
Identity = 31/79 (39.24%), Postives = 43/79 (54.43%), Query Frame = 3 
Query:   63 CMSDELFFIANERVFEVLFDRYSEQA-YLDFNDEQCNLIQIHIHSPSEHAIGGSLRAGKIHWVHIKDGTEAELRVVGVL 296
            CM D+L + A+ + + V FD Y +    +  N    NL+Q H+HS SEH IGG     +IH+VH        L VVGV+
Sbjct:  120 CMLDDLDYKADGKGWTVTFDGYCQTTPTITINGAVFNLLQFHLHSVSEHVIGGGYYDAEIHFVHYSALDPTSLAVVGVM 198
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BLAST of mRNA_H-elongata_contig56344.13082.1 vs. uniprot
Match: A0A7W3FQ27_9GAMM (Carbonic anhydrase n=1 Tax=Stenotrophomonas tumulicola TaxID=1685415 RepID=A0A7W3FQ27_9GAMM)

HSP 1 Score: 52.8 bits (125), Expect = 8.420e-6
Identity = 25/60 (41.67%), Postives = 36/60 (60.00%), Query Frame = 3 
Query:  141 YLDFNDEQCNLIQIHIHSPSEHAIGGSLRAGKIHWVHIKDGTEAELRVVGVLFDVSEYGT 320
            Y++   E+ NL+Q H+H+PSEH + G   A ++H VH     + +L VV V FDV E  T
Sbjct:  105 YIELEGERFNLLQFHVHTPSEHRVDGREHAMELHLVHAN--ADGKLAVVAVFFDVGEPNT 162
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BLAST of mRNA_H-elongata_contig56344.13082.1 vs. uniprot
Match: UPI001C8A9205 (carbonic anhydrase family protein n=1 Tax=Qipengyuania polymorpha TaxID=2867234 RepID=UPI001C8A9205)

HSP 1 Score: 50.1 bits (118), Expect = 7.140e-5
Identity = 27/69 (39.13%), Postives = 40/69 (57.97%), Query Frame = 3 
Query:  129 SEQAYLDFND--------EQCNLIQIHIHSPSEHAIGGSLRAGKIHWVHIKDGTEAELRVVGVLFDVSE 311
            +E+  +DF +        ++ NLIQ+H H+PSEHA+ G       H+VH  D  E EL V+GV+F+  E
Sbjct:   82 TEKVQVDFEEGFGMNSGGKEFNLIQVHFHTPSEHAVSGKRYPLVAHFVHATD--EGELGVLGVMFEEGE 148
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BLAST of mRNA_H-elongata_contig56344.13082.1 vs. uniprot
Match: A0A0P7ZVU7_9CYAN (Carbonic anhydrase n=1 Tax=Phormidesmis priestleyi Ana TaxID=1666911 RepID=A0A0P7ZVU7_9CYAN)

HSP 1 Score: 50.1 bits (118), Expect = 8.840e-5
Identity = 24/61 (39.34%), Postives = 36/61 (59.02%), Query Frame = 3 
Query:  126 YSEQAYLDFNDEQCNLIQIHIHSPSEHAIGGSLRAGKIHWVHIKDGTEAELRVVGVLFDVS 308
            Y+  +Y+  N +Q NL+Q H+HSPSEH +   +   ++H VH  D  + +L VV VL   S
Sbjct:  148 YAPGSYIRLNGQQYNLLQFHLHSPSEHTVNNRVWDAELHLVHQSD--KGDLAVVAVLLQSS 206
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56344.13082.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
F6MHT6_SACJA1.760e-3555.05Carbonic anhydrase n=1 Tax=Saccharina japonica Tax... [more]
D8LB10_ECTSI1.150e-2148.96Carbonic anhydrase n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A872YNN4_SACJA1.210e-2045.05Carbonic anhydrase n=1 Tax=Saccharina japonica Tax... [more]
Q9SMD6_9PHAE3.090e-860.00Carbonic anhydrase alpha type (Fragment) n=1 Tax=L... [more]
A0A7S3XQ34_HETAK7.150e-737.80Carbonic anhydrase (Fragment) n=1 Tax=Heterosigma ... [more]
H6WB77_VAULI8.970e-738.20Carbonic anhydrase n=1 Tax=Vaucheria litorea TaxID... [more]
H6WB76_VAULI1.560e-639.24Carbonic anhydrase n=1 Tax=Vaucheria litorea TaxID... [more]
A0A7W3FQ27_9GAMM8.420e-641.67Carbonic anhydrase n=1 Tax=Stenotrophomonas tumuli... [more]
UPI001C8A92057.140e-539.13carbonic anhydrase family protein n=1 Tax=Qipengyu... [more]
A0A0P7ZVU7_9CYAN8.840e-539.34Carbonic anhydrase n=1 Tax=Phormidesmis priestleyi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56344contigH-elongata_contig56344:1823..3573 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.5
Seed ortholog evalue1.4e-14
Seed eggNOG ortholog2880.D8LB10
KEGG rclassRC02807
KEGG koko:K01672,ko:K01674,ko:K04413
KEGG ReactionR00132,R10092
KEGG Pathwayko00910,map00910
GOsGO:0005575,GO:0005623,GO:0042597,GO:0044464
EggNOG free text desc.carbonate dehydratase activity
EggNOG OGsCOG3338@1,KOG0382@2759
EC2.7.11.1,4.2.1.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Hectar predicted targeting categoryother localisation
Exons4
Model size329
Cds size264
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56344.13082.1prot_H-elongata_contig56344.13082.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig56344 1823..2887 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930917.441663-CDS-H-elongata_contig56344:1822..19421622930917.441663-CDS-H-elongata_contig56344:1822..1942Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56344 1823..1942 -
1691679623.9740214-CDS-H-elongata_contig56344:1822..19421691679623.9740214-CDS-H-elongata_contig56344:1822..1942Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56344 1823..1942 -
1622930917.4663978-CDS-H-elongata_contig56344:2158..22571622930917.4663978-CDS-H-elongata_contig56344:2158..2257Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56344 2159..2257 -
1691679623.9863262-CDS-H-elongata_contig56344:2158..22571691679623.9863262-CDS-H-elongata_contig56344:2158..2257Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56344 2159..2257 -
1622930917.4875998-CDS-H-elongata_contig56344:2842..28871622930917.4875998-CDS-H-elongata_contig56344:2842..2887Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56344 2843..2887 -
1691679624.002336-CDS-H-elongata_contig56344:2842..28871691679624.002336-CDS-H-elongata_contig56344:2842..2887Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56344 2843..2887 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930917.5120819-UTR-H-elongata_contig56344:2887..29261622930917.5120819-UTR-H-elongata_contig56344:2887..2926Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56344 2888..2926 -
1691679624.0204663-UTR-H-elongata_contig56344:2887..29261691679624.0204663-UTR-H-elongata_contig56344:2887..2926Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56344 2888..2926 -
1622930917.5299447-UTR-H-elongata_contig56344:3547..35731622930917.5299447-UTR-H-elongata_contig56344:3547..3573Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56344 3548..3573 -
1691679624.0330257-UTR-H-elongata_contig56344:3547..35731691679624.0330257-UTR-H-elongata_contig56344:3547..3573Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56344 3548..3573 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig56344.13082.1

>prot_H-elongata_contig56344.13082.1 ID=prot_H-elongata_contig56344.13082.1|Name=mRNA_H-elongata_contig56344.13082.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
MSDELFFIANERVFEVLFDRYSEQAYLDFNDEQCNLIQIHIHSPSEHAIG
GSLRAGKIHWVHIKDGTEAELRVVGVLFDVSEYGTNVE
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mRNA from alignment at H-elongata_contig56344:1823..3573-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig56344.13082.1 ID=mRNA_H-elongata_contig56344.13082.1|Name=mRNA_H-elongata_contig56344.13082.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1751bp|location=Sequence derived from alignment at H-elongata_contig56344:1823..3573- (Himanthalia elongata Himel1 dioecious)
CGGCCGACACGTAAACGGTTGAGGAGGTGAGAACTATCGGGGGGCTCTGT
TGGACGATTCCCGCTGCCCAAGTACGGTAAAATGCTCTTCGTCGCCCGTG
TATACTCTAGGTAGTATGTTTATTTTTTCCAACCATATTCTGCATCCTAC
AAGAAACGCCCTCGCTATGACAAAAAACGTGCTGAATATAATTAGCTTTA
TTTGTTCTATACTCTTTGCAAGATATATATATATATATATTGTAGGCACT
GATTGATGCGAGAATAGGTTATTCGGAAAAATAAAAAAAAACAGCCTGCG
ACGATAACTAACATGAATAACCAGGCACTGTAAGCGCTTCCATTATTATT
GTGAAACGATAGGGAACTATTATGTGGATACTATGTGGATTTCTTATATT
TTCGAGTCAGATGAACGATTTTGCGCAATCTTCATAACATTAAACTCTTA
ATAGTGTAAACTAAGGTAATTAATTTAATATGTCCACTTTGCCTCACAAT
TTCAATGGGTGTGATGTAGTTTTCGAAGAAGAAGGGGTGTTTGAGTGTGT
CTACCCTCATTGCGGGAAGGGGAGAGCTGACCCCCGTTTCCTTGCCTCCC
CTGTTACTCTCCCTGACGCGGTTGTACGTATTATCACCCGAGAGCAGTCG
ACCGGATTCAAAATCGAGTTCTTCCCGCACACATGCATGTCGGATGAATT
ATTCTTCATTGCTAATGAGCGCGTGTTTGAGGTGAGGAGCAGGCGCCAAG
CAAGGTAGTGCTGAATGGCTGCAGTAGTTGTGGTCGTTGGGTGTCGAGAT
AAAATAAAAAAAAACTAGAAAATATATTTTATGGCCGGCCGTGAGAGATT
TTTGCGTAGTAATAATCCAACGATAGGGGGGAGGGGTGAACTCGCGAAAA
CGCCCCCGGTTCACGGAGGGGACATGTTAAAATTTCCCCTCCTGTTAACA
AAAACATATACACCCCCTCTTTCGTTGCAATCAGATACCGCATCTGAATC
ACTACGACCGGGGATACGGCGATTCGATCCCCGGAAGAAGAGGACGAACT
AGGGCCCTACCCTCCAAAAAGAAGAGACGATTATGTTACGTCCTTTGAAC
TTGGAAAACTAAGGGTGGAACTTTTAGTATTTTAAGTTGACTTCAAGGCC
GAACCGCTCCACAGGCAGTGAAGCCATAACGTCATAACCAGATATCAACA
AATATGACTTAGAGGTCGGAAATGCTGTCGTCGTCCTCCCTTCCCCTTTG
AGCGTGAGGCCGCAACGTAAAGAAGCCCCTTCTCTTATAATGAAAACGTA
TTTGTTTTCGACGCAGGTACTTTTCGACCGATATTCGGAGCAGGCCTACT
TAGACTTTAACGACGAGCAGTGCAATCTGATTCAGATCCACATCCATTCT
CCCTCGGAGCACGCGGTGAGAAGAGGATGTGCCCTGAGAGATTAATTTGG
CGTATCTATTTTGCGTGCGGGCCTCTGGTGTAAGGCGAAGAGTCATGCTT
GTATCCGAGCATATCCGAGGAGCATTGATTCTCGTTCGCTCAAAGATGTC
GTCTTTGGTTTCTACAACTTCTACCGACCCGTAGTATTAGCCTTAGGGTC
TCGATTTCCGCTGCACTCTTTTTGATGACAGATCGGTGGATCTCTGCGTG
CGGGCAAAATCCACTGGGTGCACATTAAGGATGGCACGGAGGCCGAATTG
CGTGTGGTTGGCGTGCTCTTTGACGTCAGCGAGTACGGCACCAACGTTGA
G
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Coding sequence (CDS) from alignment at H-elongata_contig56344:1823..3573-

>mRNA_H-elongata_contig56344.13082.1 ID=mRNA_H-elongata_contig56344.13082.1|Name=mRNA_H-elongata_contig56344.13082.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at H-elongata_contig56344:1823..3573- (Himanthalia elongata Himel1 dioecious)
ATGTCGGATGAATTATTCTTCATTGCTAATGAGCGCGTGTTTGAGATGTC
GGATGAATTATTCTTCATTGCTAATGAGCGCGTGTTTGAGGTACTTTTCG
ACCGATATTCGGAGCAGGCCTACTTAGACTTTAACGACGAGCAGTGCAAT
CTGATTCAGATCCACATCCATTCTCCCTCGGAGCACGCGGTACTTTTCGA
CCGATATTCGGAGCAGGCCTACTTAGACTTTAACGACGAGCAGTGCAATC
TGATTCAGATCCACATCCATTCTCCCTCGGAGCACGCGATCGGTGGATCT
CTGCGTGCGGGCAAAATCCACTGGGTGCACATTAAGGATGGCACGGAGGC
CGAATTGCGTGTGGTTGGCGTGCTCTTTGACGTCAGCGAGTACGGCACCA
ACGTTGAGATCGGTGGATCTCTGCGTGCGGGCAAAATCCACTGGGTGCAC
ATTAAGGATGGCACGGAGGCCGAATTGCGTGTGGTTGGCGTGCTCTTTGA
CGTCAGCGAGTACGGCACCAACGTTGAG
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