mRNA_H-elongata_contig56261.13072.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig56261.13072.1
Unique NamemRNA_H-elongata_contig56261.13072.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig56261.13072.1 vs. uniprot
Match: A0A6H5K3S5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K3S5_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 1.130e-53
Identity = 106/204 (51.96%), Postives = 122/204 (59.80%), Query Frame = 1 
Query:    1 MMRSMEVLRQRGAPSVEGTHAYIPLQVSDANEVGEDEKEFEYWTSGDELGVGRR-----RRWRKREQAGTGEGGRRLGDRESD--------LLPHYTPLYTNMKVLRRKRLDASMVYYRAGPGTKVCFLLSLWGVCFLTWLGVMLAGGSPYIIPKDSSETKLALSRPVFGGAAMYLVCASLAGFSWYKSSYGKGRLPTMGDSSL 573
            MMR++E LRQR  PS+     Y P+ +SD+          E+  +G   G GR      RR R+                           L P YTPLYTNMKVLRRKRLDASM+Y RAGP TK+CFL SLWG  FLTWLG  LA GSPYIIP+D   T LA SR VFG AAMYLVCA L G+SWYKSS+G   LPT+GDS+L
Sbjct:    1 MMRAVETLRQRLPPSL----GYAPVLLSDSXXXXXXXXRGEFEIAGGNFGGGRHQDRDLRRPRRXXXXXXXXXXXXXXXXXXXXXXXXXXLLWPPYTPLYTNMKVLRRKRLDASMMYSRAGPCTKICFLTSLWGASFLTWLGFTLASGSPYIIPEDPPATNLARSRSVFGAAAMYLVCACLTGYSWYKSSWGARPLPTLGDSTL 200
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56261.13072.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K3S5_9PHAE1.130e-5351.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56261contigH-elongata_contig56261:900..2492 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_002760.1
Exons2
Model size585
Cds size585
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930916.4055202-CDS-H-elongata_contig56261:899..11561622930916.4055202-CDS-H-elongata_contig56261:899..1156Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56261 900..1156 -
1691679623.646747-CDS-H-elongata_contig56261:899..11561691679623.646747-CDS-H-elongata_contig56261:899..1156Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56261 900..1156 -
1622930916.4250672-CDS-H-elongata_contig56261:2164..24921622930916.4250672-CDS-H-elongata_contig56261:2164..2492Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56261 2165..2492 -
1691679623.6552358-CDS-H-elongata_contig56261:2164..24921691679623.6552358-CDS-H-elongata_contig56261:2164..2492Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56261 2165..2492 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56261.13072.1prot_H-elongata_contig56261.13072.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig56261 900..2492 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig56261.13072.1

>prot_H-elongata_contig56261.13072.1 ID=prot_H-elongata_contig56261.13072.1|Name=mRNA_H-elongata_contig56261.13072.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=195bp
MMRSMEVLRQRGAPSVEGTHAYIPLQVSDANEVGEDEKEFEYWTSGDELG
VGRRRRWRKREQAGTGEGGRRLGDRESDLLPHYTPLYTNMKVLRRKRLDA
SMVYYRAGPGTKVCFLLSLWGVCFLTWLGVMLAGGSPYIIPKDSSETKLA
LSRPVFGGAAMYLVCASLAGFSWYKSSYGKGRLPTMGDSSLESR*
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mRNA from alignment at H-elongata_contig56261:900..2492-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig56261.13072.1 ID=mRNA_H-elongata_contig56261.13072.1|Name=mRNA_H-elongata_contig56261.13072.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1593bp|location=Sequence derived from alignment at H-elongata_contig56261:900..2492- (Himanthalia elongata Himel1 dioecious)
ATGATGCGGTCTATGGAGGTGTTGCGACAGAGGGGGGCTCCGTCTGTTGA
GGGCACTCACGCGTACATACCGCTGCAAGTATCCGACGCGAACGAGGTGG
GCGAAGACGAGAAAGAGTTCGAGTACTGGACCAGTGGTGACGAGTTAGGC
GTTGGCAGAAGGAGGCGTTGGCGAAAAAGAGAACAGGCGGGGACGGGGGA
AGGAGGGAGGCGTCTCGGGGACAGAGAGAGTGATCTCTTGCCGCACTATA
CACCACTCTACACCAACATGAAGGTGTTGAGAAGGAAACGATTGGACGCG
TCAATGGTGTACTACAGGGCGGGCCCTGGTAAGGGGTTGTTTCTACCCGT
ATTGAGAACATGATGGAATATTCGTCCTGAAACCGCTTCATTCTTCAACG
ATGGTGATCTTTTGCGGTTCCATTCCAGCTCCTCACTCGCGTTTCGACCA
TTAGGTTTCGTTCTAAGCGGTTCCTAACGTTTTCTTTCTGAAATAACATG
TCCATATGTTTTTCAATAAAAATGCGTTTGTAATGTAGTGGTAACCATGT
ATAACCCATTCGTGCGGAAAATCATGAATCATGAGTTCGATTCTTACCAG
GATATGTTTATTTTTGTAGCGGAAAGCGTGAGAACCGAAGTTGAATTAGC
TCAACCATTGGCGGATGAGGTGAACGACTGCTAAAACTCGCATCGCGATA
AAAAAATACTTGTAAGGAGGCATTAATTAACGGGGGCGAGATGGGTATAT
CCCCTAAGCACCACGGGCAGGATGGGCAACGTTGCAGTAGGTGAGATTGA
TAACCCATTACTGTAATAGCACTTGAAATGGCTCATCCCATCGGCAGAGA
GTTTGAGAAAAGAAAAGAAAAAAACGTGATCAAGCATGTATTTGCAAAGG
GGTAGTATTTTCAGCCTAAAATCAGCAGCACTGTAGACACTCGCCGCGGT
GGAGAATTCGCCTGTGCTGCTCAACACGTGATACAATCATCGAATTTCTG
GGTACCCAGACTCGGGGAATGCAGCTGCTGCTATCGCCGGCATGCGGAAT
TATTTCAGTCTTACGACCGTAGACGCGCATGATCGTTTCTGCGGGTCCCC
ATCCGGAAATATTATCGTCGGAATCTCTTCGGACCCCCCCTCACCCCCCG
CTGTTGATAAAAAAAATATCCGACAGCTCCCGAAAACCATTTGAGGCAAT
ATGAGTACGACACGATTAAACCACACGGGAATAGGCCGAACGAGCTATGG
CGAGAAGAGAGTGGTGAGTAAGTAATGATAAATTCGCGCCGTCTGACTAC
CCATGTTCTTTCTCTCCCTTCATGCTTCCGCCTCAGGCACGAAGGTCTGC
TTCCTCTTGTCGCTCTGGGGCGTCTGCTTCTTGACCTGGCTCGGGGTCAT
GCTGGCGGGAGGGTCGCCGTACATTATCCCAAAAGACAGCTCGGAGACAA
AGCTAGCGCTGTCGCGCCCCGTCTTCGGCGGCGCCGCGATGTACCTTGTT
TGCGCTTCCCTCGCAGGATTTTCGTGGTACAAGTCGTCGTACGGGAAGGG
GCGGTTGCCAACCATGGGAGATAGCAGCTTGGAGAGTAGATAG
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Coding sequence (CDS) from alignment at H-elongata_contig56261:900..2492-

>mRNA_H-elongata_contig56261.13072.1 ID=mRNA_H-elongata_contig56261.13072.1|Name=mRNA_H-elongata_contig56261.13072.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1170bp|location=Sequence derived from alignment at H-elongata_contig56261:900..2492- (Himanthalia elongata Himel1 dioecious)
ATGATGCGGTCTATGGAGGTGTTGCGACAGAGGGGGGCTCCGTCTGTTGA
GGGCACTCACGCGTACATACCGCTGCAAGTATCCGACGCGAACGAGGTGG
GCGAAGACGAGAAAGAGTTCGAGTACTGGACCAGTGGTGACGAGTTAGGC
GTTGGCAGAAGGAGGCGTTGGCGAAAAAGAGAACAGGCGGGGACGGGGGA
AGGAGGGAGGCGTCTCGGGGACAGAGAGAGTGATCTCTTGCCGCACTATA
CACCACTCTACACCAACATGAAGGTGTTGAGAAGGAAACGATTGGACGCG
TCAATGGTGTACTACAGGGCGGGCCCTGATGATGCGGTCTATGGAGGTGT
TGCGACAGAGGGGGGCTCCGTCTGTTGAGGGCACTCACGCGTACATACCG
CTGCAAGTATCCGACGCGAACGAGGTGGGCGAAGACGAGAAAGAGTTCGA
GTACTGGACCAGTGGTGACGAGTTAGGCGTTGGCAGAAGGAGGCGTTGGC
GAAAAAGAGAACAGGCGGGGACGGGGGAAGGAGGGAGGCGTCTCGGGGAC
AGAGAGAGTGATCTCTTGCCGCACTATACACCACTCTACACCAACATGAA
GGTGTTGAGAAGGAAACGATTGGACGCGTCAATGGTGTACTACAGGGCGG
GCCCTGGCACGAAGGTCTGCTTCCTCTTGTCGCTCTGGGGCGTCTGCTTC
TTGACCTGGCTCGGGGTCATGCTGGCGGGAGGGTCGCCGTACATTATCCC
AAAAGACAGCTCGGAGACAAAGCTAGCGCTGTCGCGCCCCGTCTTCGGCG
GCGCCGCGATGTACCTTGTTTGCGCTTCCCTCGCAGGATTTTCGTGGTAC
AAGTCGTCGTACGGGAAGGGGCGGTTGCCAACCATGGGAGATAGCAGCTT
GGAGAGTAGATAGGCACGAAGGTCTGCTTCCTCTTGTCGCTCTGGGGCGT
CTGCTTCTTGACCTGGCTCGGGGTCATGCTGGCGGGAGGGTCGCCGTACA
TTATCCCAAAAGACAGCTCGGAGACAAAGCTAGCGCTGTCGCGCCCCGTC
TTCGGCGGCGCCGCGATGTACCTTGTTTGCGCTTCCCTCGCAGGATTTTC
GTGGTACAAGTCGTCGTACGGGAAGGGGCGGTTGCCAACCATGGGAGATA
GCAGCTTGGAGAGTAGATAG
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