prot_H-elongata_contig56261.13072.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig56261.13072.1
Unique Name	prot_H-elongata_contig56261.13072.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	195

Homology

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BLAST of mRNA_H-elongata_contig56261.13072.1 vs. uniprot
Match: A0A6H5K3S5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K3S5_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 1.130e-53
Identity = 106/204 (51.96%), Postives = 122/204 (59.80%), Query Frame = 0

Query:    1 MMRSMEVLRQRGAPSVEGTHAYIPLQVSDANEVGEDEKEFEYWTSGDELGVGRR-----RRWRKREQAGTGEGGRRLGDRESD--------LLPHYTPLYTNMKVLRRKRLDASMVYYRAGPGTKVCFLLSLWGVCFLTWLGVMLAGGSPYIIPKDSSETKLALSRPVFGGAAMYLVCASLAGFSWYKSSYGKGRLPTMGDSSL 191
            MMR++E LRQR  PS+     Y P+ +SD+          E+  +G   G GR      RR R+                           L P YTPLYTNMKVLRRKRLDASM+Y RAGP TK+CFL SLWG  FLTWLG  LA GSPYIIP+D   T LA SR VFG AAMYLVCA L G+SWYKSS+G   LPT+GDS+L
Sbjct:    1 MMRAVETLRQRLPPSL----GYAPVLLSDSXXXXXXXXRGEFEIAGGNFGGGRHQDRDLRRPRRXXXXXXXXXXXXXXXXXXXXXXXXXXLLWPPYTPLYTNMKVLRRKRLDASMMYSRAGPCTKICFLTSLWGASFLTWLGFTLASGSPYIIPEDPPATNLARSRSVFGAAAMYLVCACLTGYSWYKSSWGARPLPTLGDSTL 200

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig56261.13072.1 vs. uniprot

BLAST of mRNA_H-elongata_contig56261.13072.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A6H5K3S5_9PHAE	1.130e-53	51.96	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 113..135
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 175..194
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 136..154
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 155..174
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..112
None	No IPR available	TMHMM	TMhelix		coord: 113..135
None	No IPR available	TMHMM	TMhelix		coord: 155..174

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig56261	contig	H-elongata_contig56261:900..2492 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig56261.13072.1	mRNA_H-elongata_contig56261.13072.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig56261 900..2492 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig56261.13072.1 ID=prot_H-elongata_contig56261.13072.1|Name=mRNA_H-elongata_contig56261.13072.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=195bp
MMRSMEVLRQRGAPSVEGTHAYIPLQVSDANEVGEDEKEFEYWTSGDELG
VGRRRRWRKREQAGTGEGGRRLGDRESDLLPHYTPLYTNMKVLRRKRLDA
SMVYYRAGPGTKVCFLLSLWGVCFLTWLGVMLAGGSPYIIPKDSSETKLA
LSRPVFGGAAMYLVCASLAGFSWYKSSYGKGRLPTMGDSSLESR*