mRNA_H-elongata_contig56229.13067.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig56229.13067.1
Unique NamemRNA_H-elongata_contig56229.13067.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig56229.13067.1 vs. uniprot
Match: D7FU11_ECTSI (BRO1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU11_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 2.480e-15
Identity = 38/52 (73.08%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:    1 ALVAGTTPKTLLARLCLGVVRLLDDSVSAMRRGGGSSQYEKLDAPFLVHITF 156
            ALVAG TPKTLLARLC GV   L+++VSAMR+GG SS Y KLD+PFLVHI+F
Sbjct:  220 ALVAGKTPKTLLARLCEGVRGQLEEAVSAMRKGGSSSAYHKLDSPFLVHISF 271
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56229.13067.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FU11_ECTSI2.480e-1573.08BRO1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56229contigH-elongata_contig56229:1191..1355 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.2
Seed ortholog evalue1.4e-12
Seed eggNOG ortholog2880.D7FU11
EggNOG free text desc.BRO1-like domain
EggNOG OGs2E3RK@1,2SAS3@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size165
Cds size165
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930915.6800802-CDS-H-elongata_contig56229:1190..13551622930915.6800802-CDS-H-elongata_contig56229:1190..1355Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56229 1191..1355 -
1691679623.3048887-CDS-H-elongata_contig56229:1190..13551691679623.3048887-CDS-H-elongata_contig56229:1190..1355Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56229 1191..1355 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56229.13067.1prot_H-elongata_contig56229.13067.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig56229 1191..1355 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig56229.13067.1

>prot_H-elongata_contig56229.13067.1 ID=prot_H-elongata_contig56229.13067.1|Name=mRNA_H-elongata_contig56229.13067.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bp
ALVAGTTPKTLLARLCLGVVRLLDDSVSAMRRGGGSSQYEKLDAPFLVHI
TFHR*
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mRNA from alignment at H-elongata_contig56229:1191..1355-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig56229.13067.1 ID=mRNA_H-elongata_contig56229.13067.1|Name=mRNA_H-elongata_contig56229.13067.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=165bp|location=Sequence derived from alignment at H-elongata_contig56229:1191..1355- (Himanthalia elongata Himel1 dioecious)
GCCCTGGTCGCGGGGACAACTCCCAAAACGCTTCTCGCCCGTCTGTGCCT
GGGGGTGGTGAGGCTGCTGGACGACAGCGTTTCCGCGATGAGGAGAGGAG
GGGGCTCGTCCCAGTACGAGAAGCTCGACGCGCCTTTCCTTGTCCACATC
ACGTTCCATCGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig56229:1191..1355-

>mRNA_H-elongata_contig56229.13067.1 ID=mRNA_H-elongata_contig56229.13067.1|Name=mRNA_H-elongata_contig56229.13067.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at H-elongata_contig56229:1191..1355- (Himanthalia elongata Himel1 dioecious)
GCCCTGGTCGCGGGGACAACTCCCAAAACGCTTCTCGCCCGTCTGTGCCT
GGGGGTGGTGAGGCTGCTGGACGACAGCGTTTCCGCGATGAGGAGAGGAG
GGGGCTCGTCCCAGTACGAGAAGCTCGACGCGCCTTTCCTTGTCCACATC
ACGTTCCATCGGTGAGCCCTGGTCGCGGGGACAACTCCCAAAACGCTTCT
CGCCCGTCTGTGCCTGGGGGTGGTGAGGCTGCTGGACGACAGCGTTTCCG
CGATGAGGAGAGGAGGGGGCTCGTCCCAGTACGAGAAGCTCGACGCGCCT
TTCCTTGTCCACATCACGTTCCATCGGTGA
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