mRNA_H-elongata_contig56191.13064.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig56191.13064.1 vs. uniprot
Match: A0A6H5JIS9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIS9_9PHAE) HSP 1 Score: 114 bits (286), Expect = 2.760e-28 Identity = 65/187 (34.76%), Postives = 101/187 (54.01%), Query Frame = 1
Query: 64 KVGQDGKVDKYKCRLTEK-------------YSPTPSTASILMLLATSAAKDGELRHFDAEQAFLKADIDEELYMEIPEEYQKFPGPVGRLNKTLY*LVQAGKCWNNTFCDDMAAIGFEQGKADPCVFHEVVDGEAEVVVAVHVDDILAHTKYKATMDRFAAALGQKFKLKNMGDARYYMDCHITRN 585
K ++GKVDK+K L + SP PS+ASI ++LA + K L H+D +QA+ A +DEE+++ IP Y + + + +Y L Q+G+ W D + GFEQ KADPCVF ++VD +V+ ++VDDIL + + A+L +KF KN G+ ++ C I R+
Sbjct: 10 KTNKEGKVDKFKALLVARGFSQIPNVDFFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLRIPAGYGDKSHKIVQAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMVIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNRGEYEWFDGCAIDRD 195
BLAST of mRNA_H-elongata_contig56191.13064.1 vs. uniprot
Match: A0A6D2KBY5_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KBY5_9BRAS) HSP 1 Score: 120 bits (301), Expect = 4.190e-28 Identity = 72/207 (34.78%), Postives = 110/207 (53.14%), Query Frame = 1
Query: 19 PKDKLVVGTKMLYNRKVGQDGKVDKYKCRL-------------TEKYSPTPSTASILMLLATSAAKDGELRHFDAEQAFLKADIDEELYMEIPEEYQKF-----PGPVGRLNKTLY*LVQAGKCWNNTFCDDMAAIGFEQGKADPCVFHEVVDGEAEVVVAVHVDDILAHTKYKATMDRFAAALGQKFKLKNMGDARYYMDCHITRN 585
P K VVG K +Y K DG +++YK RL TE +SP S+ +LLA +A K L D AFL +D+DEE+YM +P+ Y P PV RL+K+LY L QA + W + D + GF+Q +D +F + V GE V V+VDDI+ + + + ++L +FK+K++G+ R+++ I R+
Sbjct: 29 PPGKNVVGCKWVYTIKYKADGTIERYKARLVAKGFTQQEGVDFTENFSPVAKLTSVKLLLALAAIKGWSLFQMDVSNAFLHSDLDEEIYMSLPQGYTPSSGSLPPNPVCRLHKSLYGLKQASRQWYHCLSDVLLRSGFKQSASDNTLFAKQV-GEKFTAVLVYVDDIMIASNSEDEVTSIKSSLSSEFKIKDLGELRFFLGLEIARS 234
BLAST of mRNA_H-elongata_contig56191.13064.1 vs. uniprot
Match: UPI0006A6DEFC (uncharacterized protein LOC106336398 n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=UPI0006A6DEFC) HSP 1 Score: 120 bits (300), Expect = 6.480e-28 Identity = 72/208 (34.62%), Postives = 110/208 (52.88%), Query Frame = 1
Query: 19 PKDKLVVGTKMLYNRKVGQDGKVDKYKCRLTEK-------------YSPTPSTASILMLLATSAAKDGELRHFDAEQAFLKADIDEELYMEIPEEYQKF------PGPVGRLNKTLY*LVQAGKCWNNTFCDDMAAIGFEQGKADPCVFHEVVDGEAEVVVAVHVDDILAHTKYKATMDRFAAALGQKFKLKNMGDARYYMDCHITRN 585
P K VG K ++ K DG V+++K R+ K +SP ++ +LLA +AAK + H D AFL D+DEE+YM++P+ Y++ P V RL+K+LY L QA WN+ + GF+Q +D +F + VD + +VV V+VDDIL ++RF L FKL+++G A+Y++ I RN
Sbjct: 736 PPGKQSVGCKWIHTIKYNPDGTVERHKSRVVAKGYTQLEGLDYLDTFSPVAKIGTLRLLLAVAAAKQWSITHLDVSNAFLNGDLDEEIYMKLPQGYEELTGKKVPPNSVCRLHKSLYGLKQASHQWNHKLSHVITGDGFKQTHSDHSLFVKYVD-KVYLVVLVYVDDILIVGNDDDAVERFKTVLKSAFKLRDLGPAKYFLGFEIARN 942
BLAST of mRNA_H-elongata_contig56191.13064.1 vs. uniprot
Match: A0A6H5JLS1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLS1_9PHAE) HSP 1 Score: 118 bits (295), Expect = 2.160e-27 Identity = 64/202 (31.68%), Postives = 108/202 (53.47%), Query Frame = 1
Query: 19 PKDKLVVGTKMLYNRKVGQDGKVDKYKCRLTEK-------------YSPTPSTASILMLLATSAAKDGELRHFDAEQAFLKADIDEELYMEIPEEYQKFPGPVGRLNKTLY*LVQAGKCWNNTFCDDMAAIGFEQGKADPCVFHEVVDGEAEVVVAVHVDDILAHTKYKATMDRFAAALGQKFKLKNMGDARYYMDCHITRN 585
P+ + V K ++ K +GK+ K+K RL + SP PS+ASI ++LA + K L H+D +QA+ A +DEE+++ +P +G+ + +Y L Q+G+ W D + GFEQ KADPCVF ++VD +++ ++VDD+L + + A+L +KF KN+G+ ++ C I R+
Sbjct: 201 PEGRRPVSPKWCFSWKTNNEGKIHKFKARLVARGFSKIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEIFLRLPAGCGDKSHKIGKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDMLV-AESDEDCEELLASLKKKFPTKNLGECEWFHRCAIERD 401
BLAST of mRNA_H-elongata_contig56191.13064.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE) HSP 1 Score: 118 bits (296), Expect = 2.230e-27 Identity = 64/202 (31.68%), Postives = 111/202 (54.95%), Query Frame = 1
Query: 19 PKDKLVVGTKMLYNRKVGQDGKVDKYKCRLTEK-------------YSPTPSTASILMLLATSAAKDGELRHFDAEQAFLKADIDEELYMEIPEEYQKFPGPVGRLNKTLY*LVQAGKCWNNTFCDDMAAIGFEQGKADPCVFHEVVDGEAEVVVAVHVDDILAHTKYKATMDRFAAALGQKFKLKNMGDARYYMDCHITRN 585
P+ + V +K ++ K ++GK+D +K RL + SP PS+ASI ++LA + K L H+D +QA+ A +DEE+++++P + + + +Y L Q+G+ W D + GFEQ KADPCVF ++VD +++ ++VDDIL + + A+L +KF KN+G+ +++ C I R+
Sbjct: 776 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERD 976
BLAST of mRNA_H-elongata_contig56191.13064.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 118 bits (296), Expect = 2.290e-27 Identity = 64/202 (31.68%), Postives = 111/202 (54.95%), Query Frame = 1
Query: 19 PKDKLVVGTKMLYNRKVGQDGKVDKYKCRLTEK-------------YSPTPSTASILMLLATSAAKDGELRHFDAEQAFLKADIDEELYMEIPEEYQKFPGPVGRLNKTLY*LVQAGKCWNNTFCDDMAAIGFEQGKADPCVFHEVVDGEAEVVVAVHVDDILAHTKYKATMDRFAAALGQKFKLKNMGDARYYMDCHITRN 585
P+ + V +K ++ K ++GK+D +K RL + SP PS+ASI ++LA + K L H+D +QA+ A +DEE+++++P + + + +Y L Q+G+ W D + GFEQ KADPCVF ++VD +++ ++VDDIL + + A+L +KF KN+G+ +++ C I R+
Sbjct: 1155 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERD 1355
BLAST of mRNA_H-elongata_contig56191.13064.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 118 bits (296), Expect = 2.300e-27 Identity = 64/202 (31.68%), Postives = 111/202 (54.95%), Query Frame = 1
Query: 19 PKDKLVVGTKMLYNRKVGQDGKVDKYKCRLTEK-------------YSPTPSTASILMLLATSAAKDGELRHFDAEQAFLKADIDEELYMEIPEEYQKFPGPVGRLNKTLY*LVQAGKCWNNTFCDDMAAIGFEQGKADPCVFHEVVDGEAEVVVAVHVDDILAHTKYKATMDRFAAALGQKFKLKNMGDARYYMDCHITRN 585
P+ + V +K ++ K ++GK+D +K RL + SP PS+ASI ++LA + K L H+D +QA+ A +DEE+++++P + + + +Y L Q+G+ W D + GFEQ KADPCVF ++VD +++ ++VDDIL + + A+L +KF KN+G+ +++ C I R+
Sbjct: 1175 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERD 1375
BLAST of mRNA_H-elongata_contig56191.13064.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 118 bits (296), Expect = 2.310e-27 Identity = 64/202 (31.68%), Postives = 111/202 (54.95%), Query Frame = 1
Query: 19 PKDKLVVGTKMLYNRKVGQDGKVDKYKCRLTEK-------------YSPTPSTASILMLLATSAAKDGELRHFDAEQAFLKADIDEELYMEIPEEYQKFPGPVGRLNKTLY*LVQAGKCWNNTFCDDMAAIGFEQGKADPCVFHEVVDGEAEVVVAVHVDDILAHTKYKATMDRFAAALGQKFKLKNMGDARYYMDCHITRN 585
P+ + V +K ++ K ++GK+D +K RL + SP PS+ASI ++LA + K L H+D +QA+ A +DEE+++++P + + + +Y L Q+G+ W D + GFEQ KADPCVF ++VD +++ ++VDDIL + + A+L +KF KN+G+ +++ C I R+
Sbjct: 1318 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERD 1518
BLAST of mRNA_H-elongata_contig56191.13064.1 vs. uniprot
Match: A0A6H5JTV6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTV6_9PHAE) HSP 1 Score: 118 bits (295), Expect = 2.970e-27 Identity = 64/202 (31.68%), Postives = 110/202 (54.46%), Query Frame = 1
Query: 19 PKDKLVVGTKMLYNRKVGQDGKVDKYKCRLTEK-------------YSPTPSTASILMLLATSAAKDGELRHFDAEQAFLKADIDEELYMEIPEEYQKFPGPVGRLNKTLY*LVQAGKCWNNTFCDDMAAIGFEQGKADPCVFHEVVDGEAEVVVAVHVDDILAHTKYKATMDRFAAALGQKFKLKNMGDARYYMDCHITRN 585
P+ + V +K ++ K ++GK+D +K RL + SP PS+ASI ++LA + K L H+D +QA+ A +DEE+++++P + + + +Y L Q+G+ W D + GFEQ KADPCVF ++VD +++ ++VDDIL + + A+L +KF KN+G+ ++ C I R+
Sbjct: 576 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECEWFDGCAIERD 776
BLAST of mRNA_H-elongata_contig56191.13064.1 vs. uniprot
Match: A0A6D2HGS3_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HGS3_9BRAS) HSP 1 Score: 118 bits (295), Expect = 3.070e-27 Identity = 71/207 (34.30%), Postives = 109/207 (52.66%), Query Frame = 1
Query: 19 PKDKLVVGTKMLYNRKVGQDGKVDKYKCRL-------------TEKYSPTPSTASILMLLATSAAKDGELRHFDAEQAFLKADIDEELYMEIPEEYQKF-----PGPVGRLNKTLY*LVQAGKCWNNTFCDDMAAIGFEQGKADPCVFHEVVDGEAEVVVAVHVDDILAHTKYKATMDRFAAALGQKFKLKNMGDARYYMDCHITRN 585
P K VVG K +Y K DG +++YK RL TE +SP S+ +LLA +A K L H D AFL +D+DEE+YM +P+ Y P PV R +K+LY L QA + W + D + GF Q +D +F + V G+ V V+VDDI+ + + + ++L +FK+K++G+ R+++ I R+
Sbjct: 875 PPGKNVVGCKWVYTIKYKADGTIERYKARLVAKGFTQQEGVDFTETFSPVAKLTSVKLLLALAAIKGWSLCHMDVSNAFLHSDLDEEIYMSLPQGYTPASGTLPPNPVCRFHKSLYGLKQASRQWYHCLSDVLLRSGFIQSASDNTLFAKHV-GDKFTAVLVYVDDIMIASNDEVEVASIKSSLSYEFKIKDLGELRFFLGLEIARS 1080 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56191.13064.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig56191.13064.1 >prot_H-elongata_contig56191.13064.1 ID=prot_H-elongata_contig56191.13064.1|Name=mRNA_H-elongata_contig56191.13064.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp MLYNRKVGQDGKVDKYKCRLTEKYSPTPSTASILMLLATSAAKDGELRHFback to top mRNA from alignment at H-elongata_contig56191:2025..2651- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig56191.13064.1 ID=mRNA_H-elongata_contig56191.13064.1|Name=mRNA_H-elongata_contig56191.13064.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=627bp|location=Sequence derived from alignment at H-elongata_contig56191:2025..2651- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig56191:2025..2651- >mRNA_H-elongata_contig56191.13064.1 ID=mRNA_H-elongata_contig56191.13064.1|Name=mRNA_H-elongata_contig56191.13064.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig56191:2025..2651- (Himanthalia elongata Himel1 dioecious)back to top |