prot_H-elongata_contig56191.13064.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig56191.13064.1
Unique Nameprot_H-elongata_contig56191.13064.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length89
Homology
BLAST of mRNA_H-elongata_contig56191.13064.1 vs. uniprot
Match: A0A6D2HGS3_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HGS3_9BRAS)

HSP 1 Score: 69.7 bits (169), Expect = 6.220e-12
Identity = 39/105 (37.14%), Postives = 54/105 (51.43%), Query Frame = 0
Query:    2 LYNRKVGQDGKVDKYKCRL-------------TEKYSPTPSTASILMLLATSAAKDGELRHFDAEQAFLKADIDEELYMEIPEEYQKF-----PGPVGRLNKTLY 88
            +Y  K   DG +++YK RL             TE +SP     S+ +LLA +A K   L H D   AFL +D+DEE+YM +P+ Y        P PV R +K+LY
Sbjct:  886 VYTIKYKADGTIERYKARLVAKGFTQQEGVDFTETFSPVAKLTSVKLLLALAAIKGWSLCHMDVSNAFLHSDLDEEIYMSLPQGYTPASGTLPPNPVCRFHKSLY 990          
BLAST of mRNA_H-elongata_contig56191.13064.1 vs. uniprot
Match: A0A6D2KBY5_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KBY5_9BRAS)

HSP 1 Score: 68.6 bits (166), Expect = 1.550e-11
Identity = 39/105 (37.14%), Postives = 54/105 (51.43%), Query Frame = 0
Query:    2 LYNRKVGQDGKVDKYKCRL-------------TEKYSPTPSTASILMLLATSAAKDGELRHFDAEQAFLKADIDEELYMEIPEEYQKF-----PGPVGRLNKTLY 88
            +Y  K   DG +++YK RL             TE +SP     S+ +LLA +A K   L   D   AFL +D+DEE+YM +P+ Y        P PV RL+K+LY
Sbjct:   40 VYTIKYKADGTIERYKARLVAKGFTQQEGVDFTENFSPVAKLTSVKLLLALAAIKGWSLFQMDVSNAFLHSDLDEEIYMSLPQGYTPSSGSLPPNPVCRLHKSLY 144          
BLAST of mRNA_H-elongata_contig56191.13064.1 vs. uniprot
Match: A0A6D2ISQ4_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2ISQ4_9BRAS)

HSP 1 Score: 66.6 bits (161), Expect = 7.180e-11
Identity = 37/105 (35.24%), Postives = 53/105 (50.48%), Query Frame = 0
Query:    2 LYNRKVGQDGKVDKYKCRL-------------TEKYSPTPSTASILMLLATSAAKDGELRHFDAEQAFLKADIDEELYMEIPEEYQKF-----PGPVGRLNKTLY 88
            +Y  K   DG +++YK +L             T+ +SP    AS+ +LL  SA K   L   D   AFL +D+DEE+YM +P+ Y        P PV RL K++Y
Sbjct:   31 VYTIKYKADGSIERYKAQLVAKGFTQQEGVDFTDTFSPVAKLASVKLLLGLSAIKGWSLSQMDVSNAFLHSDLDEEIYMSLPQGYTPASGTLPPNPVCRLRKSIY 135          
BLAST of mRNA_H-elongata_contig56191.13064.1 vs. uniprot
Match: UPI00123185CF (hypothetical protein n=1 Tax=Pseudomonas aeruginosa TaxID=287 RepID=UPI00123185CF)

HSP 1 Score: 63.2 bits (152), Expect = 8.250e-11
Identity = 30/67 (44.78%), Postives = 43/67 (64.18%), Query Frame = 0
Query:   22 EKYSPTPSTASILMLLATSAAKDGELRHFDAEQAFLKADIDEELYMEIPEEYQKFPGPVGRLNKTLY 88
            E YSP  S  ++  L A +A+KD  +  FD + AFL  +++E +YM IP+ Y+K PG V RL K+LY
Sbjct:   49 EIYSPVVSQLTLKSLFALAASKDYNMMTFDVKTAFLYGELEENVYMNIPDGYEKQPGKVCRLKKSLY 115          
BLAST of mRNA_H-elongata_contig56191.13064.1 vs. uniprot
Match: UPI0006A6DEFC (uncharacterized protein LOC106336398 n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=UPI0006A6DEFC)

HSP 1 Score: 66.2 bits (160), Expect = 1.030e-10
Identity = 35/106 (33.02%), Postives = 56/106 (52.83%), Query Frame = 0
Query:    2 LYNRKVGQDGKVDKYKCRLTEK-------------YSPTPSTASILMLLATSAAKDGELRHFDAEQAFLKADIDEELYMEIPEEYQKF------PGPVGRLNKTLY 88
            ++  K   DG V+++K R+  K             +SP     ++ +LLA +AAK   + H D   AFL  D+DEE+YM++P+ Y++       P  V RL+K+LY
Sbjct:  747 IHTIKYNPDGTVERHKSRVVAKGYTQLEGLDYLDTFSPVAKIGTLRLLLAVAAAKQWSITHLDVSNAFLNGDLDEEIYMKLPQGYEELTGKKVPPNSVCRLHKSLY 852          
BLAST of mRNA_H-elongata_contig56191.13064.1 vs. uniprot
Match: A0A2K3JLR7_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3JLR7_TRIPR)

HSP 1 Score: 63.2 bits (152), Expect = 1.120e-10
Identity = 36/101 (35.64%), Postives = 52/101 (51.49%), Query Frame = 0
Query:    2 LYNRKVGQDGKVDKYKCRLTEK-------------YSPTPSTASILMLLATSAAKDGELRHFDAEQAFLKADIDEELYMEIPEEYQ-KFPGPVGRLNKTLY 88
            +Y  K    G+V+KYK RL  K             ++P     ++  LL+ + AK  EL   D   AFL  D++EE+YM++P+ YQ    G V RL K+LY
Sbjct:   31 VYKVKYKASGEVEKYKARLVAKGFTQIEGEDFNETFAPVAKMTTVRCLLSVAVAKGWELHQMDVSNAFLHGDLEEEVYMQVPDGYQVPKEGMVCRLRKSLY 131          
BLAST of mRNA_H-elongata_contig56191.13064.1 vs. uniprot
Match: A0A6H5JSV1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSV1_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.370e-10
Identity = 28/67 (41.79%), Postives = 47/67 (70.15%), Query Frame = 0
Query:   22 EKYSPTPSTASILMLLATSAAKDGELRHFDAEQAFLKADIDEELYMEIPEEYQKFPGPVGRLNKTLY 88
            E Y+PT + +S+ +L A +  ++  LRH D +QAF+ +D+DE+++M +PE+  +  G V RLNK+LY
Sbjct:  604 ETYAPTEAVSSVRLLAAMACEQNLSLRHIDIKQAFVPSDLDEDVFMRLPEDCGRLSGKVVRLNKSLY 670          
BLAST of mRNA_H-elongata_contig56191.13064.1 vs. uniprot
Match: A0A6H5KRJ6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRJ6_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 2.450e-10
Identity = 27/67 (40.30%), Postives = 48/67 (71.64%), Query Frame = 0
Query:   22 EKYSPTPSTASILMLLATSAAKDGELRHFDAEQAFLKADIDEELYMEIPEEYQKFPGPVGRLNKTLY 88
            E Y+PT + +S+ +L A +  ++  LRHFD +QAF+++D+DE+++M +PE   +  G + +LNK+LY
Sbjct:  191 ETYAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLY 257          
BLAST of mRNA_H-elongata_contig56191.13064.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 2.450e-10
Identity = 27/67 (40.30%), Postives = 48/67 (71.64%), Query Frame = 0
Query:   22 EKYSPTPSTASILMLLATSAAKDGELRHFDAEQAFLKADIDEELYMEIPEEYQKFPGPVGRLNKTLY 88
            E Y+PT + +S+ +L A +  ++  LRHFD +QAF+++D+DE+++M +PE   +  G + +LNK+LY
Sbjct:   10 ETYAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLY 76          
BLAST of mRNA_H-elongata_contig56191.13064.1 vs. uniprot
Match: A0A6H5KSD7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSD7_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 2.530e-10
Identity = 27/67 (40.30%), Postives = 48/67 (71.64%), Query Frame = 0
Query:   22 EKYSPTPSTASILMLLATSAAKDGELRHFDAEQAFLKADIDEELYMEIPEEYQKFPGPVGRLNKTLY 88
            E Y+PT + +S+ +L A +  ++  LRHFD +QAF+++D+DE+++M +PE   +  G + +LNK+LY
Sbjct:  184 ETYAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLY 250          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56191.13064.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6D2HGS3_9BRAS6.220e-1237.14Integrase catalytic domain-containing protein n=1 ... [more]
A0A6D2KBY5_9BRAS1.550e-1137.14Uncharacterized protein n=1 Tax=Microthlaspi errat... [more]
A0A6D2ISQ4_9BRAS7.180e-1135.24Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI00123185CF8.250e-1144.78hypothetical protein n=1 Tax=Pseudomonas aeruginos... [more]
UPI0006A6DEFC1.030e-1033.02uncharacterized protein LOC106336398 n=1 Tax=Brass... [more]
A0A2K3JLR7_TRIPR1.120e-1035.64Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5JSV1_9PHAE1.370e-1041.79Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KRJ6_9PHAE2.450e-1040.30Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JLN0_9PHAE2.450e-1040.30Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSD7_9PHAE2.530e-1040.30Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 88..88
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 13..88
e-value: 2.0E-8
score: 34.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56191contigH-elongata_contig56191:2298..2603 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56191.13064.1mRNA_H-elongata_contig56191.13064.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig56191 2025..2651 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig56191.13064.1 ID=prot_H-elongata_contig56191.13064.1|Name=mRNA_H-elongata_contig56191.13064.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
MLYNRKVGQDGKVDKYKCRLTEKYSPTPSTASILMLLATSAAKDGELRHF
DAEQAFLKADIDEELYMEIPEEYQKFPGPVGRLNKTLY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2