mRNA_H-elongata_contig56131.13057.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig56131.13057.1
Unique NamemRNA_H-elongata_contig56131.13057.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig56131.13057.1 vs. uniprot
Match: D7FGW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGW3_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 2.920e-42
Identity = 125/299 (41.81%), Postives = 162/299 (54.18%), Query Frame = 1 
Query:    1 QDTDNSWNSRLTPMTRLLIAAGLSSSGVRAVHFIEDHQATFSY--PSTQERIRSETKAG-----GGVRGRKEDPFSRPLEGQIGVLRLDR---RSEFMVTSAEEGQSLDDVNRLSIAAPVV----YEANGRRDNS-NGRGGGG-ECVKFVTDVGSLGQEDQRKWFPEDRDARELLLALDNFCPISWLRRE------------KAETDDGDEDMVGEM------AWREVDRGVIWAGEAPGVYRR-------------RNPGALISNRKDDKRKVIIYQRDRDRKLLKSKEVRSVLGLLL 756
            +D+D SWNSRL+PMTRLL+AAGLSS GVR VHF++ + A+FSY  PS+                GG     E   S P  GQ GVL LD     S+F+V++    Q L D  RL+++AP+     ++  G  D +  GRGGG  ECVKFV  VG  GQ+ + KWFPE+ D RELL ALD+FCPI+WLR+E            K   DDGDE   G +      A  +  RG    G   G+Y               R   A    R+ + RK++IYQRDRDRKLLK++E+   L + L
Sbjct:   38 KDSDTSWNSRLSPMTRLLVAAGLSSVGVRDVHFVDGNHASFSYAAPSSXXXXXXXXXXXXXALRGGSSSSSEIGDS-PRPGQTGVLHLDEIGYMSQFVVSTE---QPLPD--RLAVSAPLSPVRRWDGGGAEDVAIEGRGGGARECVKFVDTVGDWGQK-RDKWFPEEEDPRELLRALDSFCPIAWLRKEEXXXXXXXXXXGKKGVDDGDEGTGGLVSPLPAGAGGDEFRGAGGRGSR-GLYATVVGGPERGFAGGGRGFRAGAKKRQPEPRKLVIYQRDRDRKLLKTEELMDELWIRL 328
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BLAST of mRNA_H-elongata_contig56131.13057.1 vs. uniprot
Match: A0A6H5JCF3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCF3_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 6.690e-39
Identity = 120/299 (40.13%), Postives = 163/299 (54.52%), Query Frame = 1 
Query:    1 QDTDNSWNSRLTPMTRLLIAAGLSSSGVRAVHFIEDHQATFSYPSTQERIRSE-------TKAGGGVRGRKEDPFSRPLEGQIGVLRLDR---RSEFMVTSAEEGQSLDDVNRLSIAAPVV----YEANGRRDNS-NGRGGGG-ECVKFVTDVGSLGQEDQRKWFPEDRDARELLLALDNFCPISWLRREKAE-------------TDDGDED---MVGEM---AWREVDRGV-------IWAGEAPGVYRR-----RNPGALISNRKDDKRKVIIYQRDRDRKLLKSKEVRSVLGLLL 756
            +D+D SWNSRL+PMTRLLIAAGLSS GV  VHF++ + A+FS+                 T   GG+   +     RP  GQ GVL LD     S+F+V++    Q L D  RL+++AP+     ++  G  + +  GRGGG  ECVKFV  VG  GQ+ + KWFPE+ D RELL ALD+FCPI+WLR+E+                D GDE    +V  +   A R+  RG        ++A    G  R      R  GA    R+ + RK++IYQRDR+RKLLK++E+   L + L
Sbjct:  199 KDSDTSWNSRLSPMTRLLIAAGLSSVGVHDVHFVDGNHASFSFXXXXXXXXXXXXXXXXXTALRGGISSSEIGDSPRP--GQTGVLHLDEIGYMSQFVVSTE---QPLPD--RLAVSAPLSPVRRWDGGGVENVAIEGRGGGARECVKFVDTVGDWGQK-RDKWFPEEEDPRELLRALDSFCPIAWLRKEEXXXXXXXXXXXGRRGVDGGDEGTGALVSPLPAGAGRDEFRGAGGRGSRGLYATVVAGPERGAAGGGRGFGAGAKKRQPEPRKLVIYQRDRNRKLLKTEELMDELWIRL 489
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56131.13057.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FGW3_ECTSI2.920e-4241.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCF3_9PHAE6.690e-3940.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56131contigH-elongata_contig56131:2497..3336 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score164.1
Seed ortholog evalue8.6e-38
Seed eggNOG ortholog2880.D7FGW3
EggNOG OGs2C9EE@1,2SQH4@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGlycosyltransferase AER61, uncharacterised
Ec32 orthologEc-11_000880.1
Exons2
Model size756
Cds size756
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930914.6152132-CDS-H-elongata_contig56131:2496..28801622930914.6152132-CDS-H-elongata_contig56131:2496..2880Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56131 2497..2880 +
1691679622.8940992-CDS-H-elongata_contig56131:2496..28801691679622.8940992-CDS-H-elongata_contig56131:2496..2880Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56131 2497..2880 +
1622930914.632003-CDS-H-elongata_contig56131:2964..33361622930914.632003-CDS-H-elongata_contig56131:2964..3336Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56131 2965..3336 +
1691679622.905963-CDS-H-elongata_contig56131:2964..33361691679622.905963-CDS-H-elongata_contig56131:2964..3336Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56131 2965..3336 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56131.13057.1prot_H-elongata_contig56131.13057.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig56131 2497..3336 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig56131.13057.1

>prot_H-elongata_contig56131.13057.1 ID=prot_H-elongata_contig56131.13057.1|Name=mRNA_H-elongata_contig56131.13057.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=252bp
QDTDNSWNSRLTPMTRLLIAAGLSSSGVRAVHFIEDHQATFSYPSTQERI
RSETKAGGGVRGRKEDPFSRPLEGQIGVLRLDRRSEFMVTSAEEGQSLDD
VNRLSIAAPVVYEANGRRDNSNGRGGGGECVKFVTDVGSLGQEDQRKWFP
EDRDARELLLALDNFCPISWLRREKAETDDGDEDMVGEMAWREVDRGVIW
AGEAPGVYRRRNPGALISNRKDDKRKVIIYQRDRDRKLLKSKEVRSVLGL
LL
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mRNA from alignment at H-elongata_contig56131:2497..3336+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig56131.13057.1 ID=mRNA_H-elongata_contig56131.13057.1|Name=mRNA_H-elongata_contig56131.13057.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=840bp|location=Sequence derived from alignment at H-elongata_contig56131:2497..3336+ (Himanthalia elongata Himel1 dioecious)
CAGGACACGGATAACTCCTGGAATTCCAGGCTGACGCCTATGACCCGGCT
CCTAATCGCCGCCGGCCTCTCCAGCTCGGGGGTCAGGGCCGTCCACTTCA
TCGAGGACCACCAGGCAACGTTCTCCTACCCCTCAACCCAGGAGAGAATA
CGAAGCGAAACAAAAGCGGGGGGAGGCGTTCGCGGGAGAAAGGAGGACCC
GTTCAGCCGTCCCCTGGAGGGGCAGATCGGGGTTCTCCGGCTGGACAGGC
GAAGCGAGTTCATGGTCACCTCTGCAGAGGAGGGGCAGTCGTTGGACGAT
GTCAACAGGCTGTCGATTGCGGCGCCCGTGGTGTATGAAGCTAACGGGAG
GAGAGATAACAGTAATGGGCGAGGTGGCGGAGGCGTTTTGGCGAGGCGGG
GAGAGGGTACCGGGGGTACGGGCTCTCGAGGTGGAAAATATGGAGCAACA
ACGGCTGCGGCGGGGGAGGAGTGCGTGAAATTCGTCACTGACGTGGGATC
CTTGGGGCAAGAAGACCAGAGAAAATGGTTCCCCGAGGACCGCGATGCCA
GGGAGCTGCTGCTCGCGCTCGACAACTTCTGTCCGATCTCGTGGCTCCGG
AGGGAAAAAGCAGAGACGGATGATGGGGACGAGGACATGGTGGGCGAGAT
GGCTTGGAGGGAGGTTGACCGGGGTGTTATCTGGGCTGGGGAAGCACCGG
GGGTTTACCGTCGGAGGAATCCCGGGGCGCTGATAAGCAATCGCAAGGAC
GATAAGCGAAAAGTGATCATCTATCAGAGAGATCGCGACCGGAAGCTTCT
CAAGTCGAAAGAGGTGAGGAGTGTTTTGGGGTTGTTGTTG
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Coding sequence (CDS) from alignment at H-elongata_contig56131:2497..3336+

>mRNA_H-elongata_contig56131.13057.1 ID=mRNA_H-elongata_contig56131.13057.1|Name=mRNA_H-elongata_contig56131.13057.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1512bp|location=Sequence derived from alignment at H-elongata_contig56131:2497..3336+ (Himanthalia elongata Himel1 dioecious)
CAGGACACGGATAACTCCTGGAATTCCAGGCTGACGCCTATGACCCGGCT
CCTAATCGCCGCCGGCCTCTCCAGCTCGGGGGTCAGGGCCGTCCACTTCA
TCGAGGACCACCAGGCAACGTTCTCCTACCCCTCAACCCAGGAGAGAATA
CGAAGCGAAACAAAAGCGGGGGGAGGCGTTCGCGGGAGAAAGGAGGACCC
GTTCAGCCGTCCCCTGGAGGGGCAGATCGGGGTTCTCCGGCTGGACAGGC
GAAGCGAGTTCATGGTCACCTCTGCAGAGGAGGGGCAGTCGTTGGACGAT
GTCAACAGGCTGTCGATTGCGGCGCCCGTGGTGTATGAAGCTAACGGGAG
GAGAGATAACAGTAATGGGCGAGGTGGCGGAGGCCAGGACACGGATAACT
CCTGGAATTCCAGGCTGACGCCTATGACCCGGCTCCTAATCGCCGCCGGC
CTCTCCAGCTCGGGGGTCAGGGCCGTCCACTTCATCGAGGACCACCAGGC
AACGTTCTCCTACCCCTCAACCCAGGAGAGAATACGAAGCGAAACAAAAG
CGGGGGGAGGCGTTCGCGGGAGAAAGGAGGACCCGTTCAGCCGTCCCCTG
GAGGGGCAGATCGGGGTTCTCCGGCTGGACAGGCGAAGCGAGTTCATGGT
CACCTCTGCAGAGGAGGGGCAGTCGTTGGACGATGTCAACAGGCTGTCGA
TTGCGGCGCCCGTGGTGTATGAAGCTAACGGGAGGAGAGATAACAGTAAT
GGGCGAGGTGGCGGAGGCGAGTGCGTGAAATTCGTCACTGACGTGGGATC
CTTGGGGCAAGAAGACCAGAGAAAATGGTTCCCCGAGGACCGCGATGCCA
GGGAGCTGCTGCTCGCGCTCGACAACTTCTGTCCGATCTCGTGGCTCCGG
AGGGAAAAAGCAGAGACGGATGATGGGGACGAGGACATGGTGGGCGAGAT
GGCTTGGAGGGAGGTTGACCGGGGTGTTATCTGGGCTGGGGAAGCACCGG
GGGTTTACCGTCGGAGGAATCCCGGGGCGCTGATAAGCAATCGCAAGGAC
GATAAGCGAAAAGTGATCATCTATCAGAGAGATCGCGACCGGAAGCTTCT
CAAGTCGAAAGAGGTGAGGAGTGTTTTGGGGTTGTTGTTGGAGTGCGTGA
AATTCGTCACTGACGTGGGATCCTTGGGGCAAGAAGACCAGAGAAAATGG
TTCCCCGAGGACCGCGATGCCAGGGAGCTGCTGCTCGCGCTCGACAACTT
CTGTCCGATCTCGTGGCTCCGGAGGGAAAAAGCAGAGACGGATGATGGGG
ACGAGGACATGGTGGGCGAGATGGCTTGGAGGGAGGTTGACCGGGGTGTT
ATCTGGGCTGGGGAAGCACCGGGGGTTTACCGTCGGAGGAATCCCGGGGC
GCTGATAAGCAATCGCAAGGACGATAAGCGAAAAGTGATCATCTATCAGA
GAGATCGCGACCGGAAGCTTCTCAAGTCGAAAGAGGTGAGGAGTGTTTTG
GGGTTGTTGTTG
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