mRNA_H-elongata_contig56099.13048.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig56099.13048.1
Unique NamemRNA_H-elongata_contig56099.13048.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig56099.13048.1 vs. uniprot
Match: D7FIM6_ECTSI (SCO1 homolog, cytochrome c oxidase copper chaperone n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIM6_ECTSI)

HSP 1 Score: 254 bits (649), Expect = 1.130e-82
Identity = 116/136 (85.29%), Postives = 126/136 (92.65%), Query Frame = 1
Query:   19 SRGPLTWGAVGLLGVVGTLIVGYYRVKWDEKQNRVASEVTSTGKPALGGPFTLVDMHGRPVTDKDFHGSFVMLYFGFCHCPDICPSELVKVGAITEKLVAKLGGGVIKPVFVSVDPDRDSLAQLRHYSQDFHPRYA 426
            SRGPLTWGAVGLLG+V TL VGYYR+KW+EKQNR ASEVTSTGKPALGGPFTLVDMHG+PVT+KD+HGSFV+LYFGFCHCPDICPSELVKVGAI  KL  KLG GV+KPVFVSVDPDRDSLAQL+HY+QDFH R A
Sbjct:  140 SRGPLTWGAVGLLGIVATLAVGYYRMKWEEKQNRTASEVTSTGKPALGGPFTLVDMHGKPVTEKDYHGSFVLLYFGFCHCPDICPSELVKVGAIATKLEGKLGAGVVKPVFVSVDPDRDSLAQLKHYAQDFHHRSA 275          
BLAST of mRNA_H-elongata_contig56099.13048.1 vs. uniprot
Match: A0A6H5KBL1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBL1_9PHAE)

HSP 1 Score: 249 bits (637), Expect = 1.970e-80
Identity = 113/132 (85.61%), Postives = 124/132 (93.94%), Query Frame = 1
Query:   19 SRGPLTWGAVGLLGVVGTLIVGYYRVKWDEKQNRVASEVTSTGKPALGGPFTLVDMHGRPVTDKDFHGSFVMLYFGFCHCPDICPSELVKVGAITEKLVAKLGGGVIKPVFVSVDPDRDSLAQLRHYSQDFH 414
            SRGPLTWGAVGLLG+V +L VGYYR+KW+EKQNR ASEVTSTGKPALGGPFTLVDMHG+PVT+KD+HGSFV+LYFGFCHCPDICPSELVKVGAI  KL  KLG GV+KPVFVSVDPDRDSLAQL+HY+QDFH
Sbjct:  140 SRGPLTWGAVGLLGIVASLAVGYYRMKWEEKQNRTASEVTSTGKPALGGPFTLVDMHGKPVTEKDYHGSFVLLYFGFCHCPDICPSELVKVGAIATKLEDKLGAGVVKPVFVSVDPDRDSLAQLKHYAQDFH 271          
BLAST of mRNA_H-elongata_contig56099.13048.1 vs. uniprot
Match: A0A4D9DEH7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DEH7_9STRA)

HSP 1 Score: 171 bits (433), Expect = 2.350e-51
Identity = 77/131 (58.78%), Postives = 99/131 (75.57%), Query Frame = 1
Query:   28 PLTWGAVGLLGVVGTLIVGYYRVKWDEKQNRVASEVTSTGKPALGGPFTLVDMHGRPVTDKDFHGSFVMLYFGFCHCPDICPSELVKVGAITEKLVAKLGGGVIKPVFVSVDPDRDSLAQLRHYSQDFHPR 420
            P+TW  + ++ V GT +  +Y+V+ +  Q +   +VTS GKPALGGP+TLVD  GRPVTD DF G F++LYFGF HCPDICPSELVKVG I + L  +    V++PVF+SVDPDRD++ QLRHY+QDFHPR
Sbjct:    2 PVTWIGLAIMAVTGTGLAYFYQVEKERMQQQALGKVTSYGKPALGGPWTLVDFTGRPVTDADFRGEFLLLYFGFTHCPDICPSELVKVGKILDLLDREPNLPVVRPVFISVDPDRDNVGQLRHYAQDFHPR 132          
BLAST of mRNA_H-elongata_contig56099.13048.1 vs. uniprot
Match: A0A835ZB06_9STRA (SCO1 family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB06_9STRA)

HSP 1 Score: 169 bits (429), Expect = 4.720e-50
Identity = 78/133 (58.65%), Postives = 102/133 (76.69%), Query Frame = 1
Query:   22 RGPLTWGAVGLLGVVGTLIVGYYRVKWDEKQNRVASEVTSTGKPALGGPFTLVDMHGRPVTDKDFHGSFVMLYFGFCHCPDICPSELVKVGAITEKLVAKLGGGV-IKPVFVSVDPDRDSLAQLRHYSQDFHP 417
            R P+TW +VGL+G+VG  +  YY  + +++  +  S+VTS GKP LGGP+TLVDMHG P TDKD+ GS+ +LYFGF HCPDICP+ELVK+G I ++   +L   V +KPVF+SVDPDRDSL QLR Y++DFHP
Sbjct:   55 RTPVTWASVGLVGIVGAGLAWYYTNEKEKRMTQTVSQVTSIGKPNLGGPWTLVDMHGVPKTDKDYLGSYTLLYFGFAHCPDICPAELVKLGHILQEASKQLKRPVPVKPVFISVDPDRDSLRQLRFYAKDFHP 187          
BLAST of mRNA_H-elongata_contig56099.13048.1 vs. uniprot
Match: W7U1H0_9STRA (Sco1 family protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U1H0_9STRA)

HSP 1 Score: 160 bits (405), Expect = 3.430e-47
Identity = 73/130 (56.15%), Postives = 95/130 (73.08%), Query Frame = 1
Query:   28 PLTWGAVGLLGVVGTLIVGYYRVKWDEKQNRVASEVTSTGKPALGGPFTLVDMHGRPVTDKDFHGSFVMLYFGFCHCPDICPSELVKVGAITEKLVAKLGGGVIKPVFVSVDPDRDSLAQLRHYSQDFHP 417
            P+TW  + ++ V GT +  +Y+V+ +  Q +   +VTS GKPALGGP+TLVD  GRPVTD DF G F++LYFGF HCPDICPSELVKVG I + L  +    V++PVF+SVDPDRD++ QLRHY+Q   P
Sbjct:   66 PVTWVGLAIMAVTGTGLAYFYQVEKERMQQQALGKVTSYGKPALGGPWTLVDFTGRPVTDADFRGEFLLLYFGFTHCPDICPSELVKVGKILDSLDREPNLPVVRPVFISVDPDRDNVGQLRHYAQGALP 195          
BLAST of mRNA_H-elongata_contig56099.13048.1 vs. uniprot
Match: A0A7S1VVL7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VVL7_9STRA)

HSP 1 Score: 153 bits (386), Expect = 9.780e-44
Identity = 69/142 (48.59%), Postives = 100/142 (70.42%), Query Frame = 1
Query:   19 SRGPLTWGAVGLLGVVGTLIVGYYRVKWDEKQNRVASEVTSTGKPALGGPFTLVDMHGRPVTDKDFHGSFVMLYFGFCHCPDICPSELVKVGAITE-------KLVAKLGGGVIKPVFVSVDPDRDSLAQLRHYSQDFHPRY 423
            SRGP++W A+GL+ V     VGYY+++ + +      ++ STGKPA+GGP++LVD+ G+ VT+K+F G +++LYFGF  CPDICPSE++KVG + +       KL AK     ++P+FVSVDP RDSL  L+ Y++DFHP Y
Sbjct:   85 SRGPVSWSALGLVTVAAATAVGYYQIERERRLENAMGKIVSTGKPAIGGPWSLVDLEGKLVTNKNFEGKWLLLYFGFARCPDICPSEMLKVGKVMDALKEQHPKLAAK-----VQPIFVSVDPARDSLLALKEYAKDFHPSY 221          
BLAST of mRNA_H-elongata_contig56099.13048.1 vs. uniprot
Match: A0A662XZY4_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XZY4_9STRA)

HSP 1 Score: 150 bits (380), Expect = 3.710e-43
Identity = 72/134 (53.73%), Postives = 94/134 (70.15%), Query Frame = 1
Query:   25 GPLTWGAVGLLGVVGTLIVGYYRVKWDEKQNRVASEVTSTGKPALGGPFTLVDMH-GRPVTDKDFHGSFVMLYFGFCHCPDICPSELVKVGAITEKLVAKLGGGVIKPVFVSVDPDRDSLAQLRHYSQDFHPRY 423
            GP+TW  + L GVVG+  V YY  + D  Q +  S+VTS GKP LGGP+TLVD   GR VTD  FHG   +LYFGF HCPDICP+ELV++G + +KL A+    V+ P+FV+VDP RD++AQ++ Y  DFHP +
Sbjct:   21 GPITWSGLALAGVVGSGAVYYYYSEKDRLQTQTTSKVTSVGKPLLGGPWTLVDCDTGRAVTDASFHGKHTLLYFGFTHCPDICPNELVRIGEVLDKLQAENAPEVV-PLFVTVDPRRDTIAQMQIYKADFHPAF 153          
BLAST of mRNA_H-elongata_contig56099.13048.1 vs. uniprot
Match: A0A7S1C0X5_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1C0X5_9STRA)

HSP 1 Score: 150 bits (379), Expect = 1.170e-42
Identity = 69/136 (50.74%), Postives = 94/136 (69.12%), Query Frame = 1
Query:   22 RGPLTWGAVGLLGVVGTLIVGYYRVKWDEKQNRVASEVTSTGKPALGGPFTLVDMHGRPVTDKDFHGSFVMLYFGFCHCPDICPSELVKVGAITEKLVAKLGGGV---IKPVFVSVDPDRDSLAQLRHYSQDFHPR 420
            RGP+TW  + L  V     VGYY+++ ++K  +   EVT+TGKPA+GGP+TLVD  GR V +  + G + +LYFGF HCPDICPSELVKV  + ++L A+ G      + P+FVSVDP RDS+ +L+ Y +DFHPR
Sbjct:   46 RGPVTWIGLTLTAVASFSAVGYYKIEQEKKAEKKMREVTTTGKPAVGGPWTLVDRSGRLVNETSYAGKYTLLYFGFAHCPDICPSELVKVAQVMDRLEAECGREAADRVVPLFVSVDPARDSIQKLKEYGRDFHPR 181          
BLAST of mRNA_H-elongata_contig56099.13048.1 vs. uniprot
Match: A0A7S2KWS8_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KWS8_9STRA)

HSP 1 Score: 149 bits (377), Expect = 8.900e-42
Identity = 68/139 (48.92%), Postives = 96/139 (69.06%), Query Frame = 1
Query:   19 SRGPLTWGAVGLLGVVGTLIVGYYRVKWDEKQNRVASEVTSTGKPALGGPFTLVDMHGRPVTDKDFHGSFVMLYFGFCHCPDICPSELVKVGAIT---EKLVAKLGGGVIKPVFVSVDPDRDSLAQLRHYSQDFHPRYA 426
            +RGP+TW A+GL+ +     V YY+++ + +      ++ STGKPA+GGP++LVD+ G  VT++ F G + +LYFGF  CPDICPSE+VK+G +    EK   KL G  I+P+FVS+DP RDSL  LR Y++DFHP Y 
Sbjct:   94 TRGPVTWPALGLVAIAAASAVSYYKIERERRLENAMGKIVSTGKPAIGGPWSLVDLDGNLVTNESFKGKWTLLYFGFARCPDICPSEMVKIGKVMDTLEKEHPKLRGQ-IQPIFVSIDPARDSLKALRDYAKDFHPSYV 231          
BLAST of mRNA_H-elongata_contig56099.13048.1 vs. uniprot
Match: A0A3R7GYF8_9STRA (Uncharacterized protein n=5 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GYF8_9STRA)

HSP 1 Score: 147 bits (372), Expect = 9.590e-42
Identity = 70/134 (52.24%), Postives = 95/134 (70.90%), Query Frame = 1
Query:   25 GPLTWGAVGLLGVVGTLIVGYYRVKWDEKQNRVASEVTSTGKPALGGPFTLVDMHG-RPVTDKDFHGSFVMLYFGFCHCPDICPSELVKVGAITEKLVAKLGGGVIKPVFVSVDPDRDSLAQLRHYSQDFHPRY 423
            GP++W  + L GVVG  +V YY  + D  Q +  S+VTS GKP LGGP+TLVD    RPVTD  F G + +LYFGF HCPDICP+ELV++G + +KL ++    V+ P+FVSVDP RD++AQ++ Y  DFHP++
Sbjct:   36 GPVSWSGLALAGVVGGSVVYYYYSEKDRLQTQTTSKVTSVGKPLLGGPWTLVDCDTKRPVTDASFRGQYSLLYFGFTHCPDICPNELVRIGDVLDKLESENLPEVV-PLFVSVDPKRDTIAQMQAYKADFHPKF 168          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56099.13048.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIM6_ECTSI1.130e-8285.29SCO1 homolog, cytochrome c oxidase copper chaperon... [more]
A0A6H5KBL1_9PHAE1.970e-8085.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4D9DEH7_9STRA2.350e-5158.78Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A835ZB06_9STRA4.720e-5058.65SCO1 family protein n=1 Tax=Tribonema minus TaxID=... [more]
W7U1H0_9STRA3.430e-4756.15Sco1 family protein n=1 Tax=Nannochloropsis gadita... [more]
A0A7S1VVL7_9STRA9.780e-4448.59Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A662XZY4_9STRA3.710e-4353.73Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A7S1C0X5_9STRA1.170e-4250.74Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S2KWS8_9STRA8.900e-4248.92Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A3R7GYF8_9STRA9.590e-4252.24Uncharacterized protein n=5 Tax=Phytophthora kerno... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56099contigH-elongata_contig56099:1923..2351 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score256.1
Seed ortholog evalue9.4e-66
Seed eggNOG ortholog2880.D7FIM6
KEGG koko:K07152,ko:K12818
KEGG Pathwayko03040,map03040
EggNOG free text desc.copper ion homeostasis
EggNOG OGsCOG1999@1,KOG2792@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03029,ko03041
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionSCO1 homolog, cytochrome c oxidase copper chaperone
Ec32 orthologEc-27_000320.1
Exons1
Model size429
Cds size429
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930913.4102395-CDS-H-elongata_contig56099:1922..23511622930913.4102395-CDS-H-elongata_contig56099:1922..2351Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56099 1923..2351 -
1691679622.290494-CDS-H-elongata_contig56099:1922..23511691679622.290494-CDS-H-elongata_contig56099:1922..2351Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56099 1923..2351 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56099.13048.1prot_H-elongata_contig56099.13048.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig56099 1923..2351 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig56099.13048.1

>prot_H-elongata_contig56099.13048.1 ID=prot_H-elongata_contig56099.13048.1|Name=mRNA_H-elongata_contig56099.13048.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=143bp
SGGDGRSRGPLTWGAVGLLGVVGTLIVGYYRVKWDEKQNRVASEVTSTGK
PALGGPFTLVDMHGRPVTDKDFHGSFVMLYFGFCHCPDICPSELVKVGAI
TEKLVAKLGGGVIKPVFVSVDPDRDSLAQLRHYSQDFHPRYA*
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mRNA from alignment at H-elongata_contig56099:1923..2351-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig56099.13048.1 ID=mRNA_H-elongata_contig56099.13048.1|Name=mRNA_H-elongata_contig56099.13048.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=429bp|location=Sequence derived from alignment at H-elongata_contig56099:1923..2351- (Himanthalia elongata Himel1 dioecious)
AGCGGCGGAGACGGCAGAAGCAGAGGCCCGCTGACATGGGGTGCGGTGGG TCTTCTCGGGGTAGTCGGCACGCTGATTGTGGGCTACTACCGCGTGAAAT GGGATGAGAAGCAGAACCGGGTGGCCTCGGAGGTGACTTCCACGGGCAAA CCCGCGCTCGGAGGGCCATTCACCCTTGTGGACATGCACGGGCGTCCGGT CACCGACAAGGACTTTCACGGATCGTTCGTGATGCTGTACTTCGGCTTTT GCCACTGTCCGGACATATGTCCCTCTGAGCTCGTGAAAGTCGGCGCGATC ACGGAGAAGCTTGTGGCCAAGTTAGGGGGGGGCGTAATAAAACCGGTGTT TGTGTCCGTCGATCCCGACCGCGACAGCCTCGCACAGCTAAGGCACTACT CTCAGGATTTCCACCCAAGGTACGCTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig56099:1923..2351-

>mRNA_H-elongata_contig56099.13048.1 ID=mRNA_H-elongata_contig56099.13048.1|Name=mRNA_H-elongata_contig56099.13048.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=858bp|location=Sequence derived from alignment at H-elongata_contig56099:1923..2351- (Himanthalia elongata Himel1 dioecious)
AGCGGCGGAGACGGCAGAAGCAGAGGCCCGCTGACATGGGGTGCGGTGGG
TCTTCTCGGGGTAGTCGGCACGCTGATTGTGGGCTACTACCGCGTGAAAT
GGGATGAGAAGCAGAACCGGGTGGCCTCGGAGGTGACTTCCACGGGCAAA
CCCGCGCTCGGAGGGCCATTCACCCTTGTGGACATGCACGGGCGTCCGGT
CACCGACAAGGACTTTCACGGATCGTTCGTGATGCTGTACTTCGGCTTTT
GCCACTGTCCGGACATATGTCCCTCTGAGCTCGTGAAAGTCGGCGCGATC
ACGGAGAAGCTTGTGGCCAAGTTAGGGGGGGGCGTAATAAAACCGGTGTT
TGTGTCCGTCGATCCCGACCGCGACAGCCTCGCACAGCTAAGGCACTACT
CTCAGGATTTCCACCCAAGGTACGCTTAAAGCGGCGGAGACGGCAGAAGC
AGAGGCCCGCTGACATGGGGTGCGGTGGGTCTTCTCGGGGTAGTCGGCAC
GCTGATTGTGGGCTACTACCGCGTGAAATGGGATGAGAAGCAGAACCGGG
TGGCCTCGGAGGTGACTTCCACGGGCAAACCCGCGCTCGGAGGGCCATTC
ACCCTTGTGGACATGCACGGGCGTCCGGTCACCGACAAGGACTTTCACGG
ATCGTTCGTGATGCTGTACTTCGGCTTTTGCCACTGTCCGGACATATGTC
CCTCTGAGCTCGTGAAAGTCGGCGCGATCACGGAGAAGCTTGTGGCCAAG
TTAGGGGGGGGCGTAATAAAACCGGTGTTTGTGTCCGTCGATCCCGACCG
CGACAGCCTCGCACAGCTAAGGCACTACTCTCAGGATTTCCACCCAAGGT
ACGCTTAA
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