prot_H-elongata_contig56099.13048.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig56099.13048.1
Unique Nameprot_H-elongata_contig56099.13048.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length143
Homology
BLAST of mRNA_H-elongata_contig56099.13048.1 vs. uniprot
Match: D7FIM6_ECTSI (SCO1 homolog, cytochrome c oxidase copper chaperone n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIM6_ECTSI)

HSP 1 Score: 254 bits (649), Expect = 1.130e-82
Identity = 116/136 (85.29%), Postives = 126/136 (92.65%), Query Frame = 0
Query:    7 SRGPLTWGAVGLLGVVGTLIVGYYRVKWDEKQNRVASEVTSTGKPALGGPFTLVDMHGRPVTDKDFHGSFVMLYFGFCHCPDICPSELVKVGAITEKLVAKLGGGVIKPVFVSVDPDRDSLAQLRHYSQDFHPRYA 142
            SRGPLTWGAVGLLG+V TL VGYYR+KW+EKQNR ASEVTSTGKPALGGPFTLVDMHG+PVT+KD+HGSFV+LYFGFCHCPDICPSELVKVGAI  KL  KLG GV+KPVFVSVDPDRDSLAQL+HY+QDFH R A
Sbjct:  140 SRGPLTWGAVGLLGIVATLAVGYYRMKWEEKQNRTASEVTSTGKPALGGPFTLVDMHGKPVTEKDYHGSFVLLYFGFCHCPDICPSELVKVGAIATKLEGKLGAGVVKPVFVSVDPDRDSLAQLKHYAQDFHHRSA 275          
BLAST of mRNA_H-elongata_contig56099.13048.1 vs. uniprot
Match: A0A6H5KBL1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBL1_9PHAE)

HSP 1 Score: 249 bits (637), Expect = 1.970e-80
Identity = 113/132 (85.61%), Postives = 124/132 (93.94%), Query Frame = 0
Query:    7 SRGPLTWGAVGLLGVVGTLIVGYYRVKWDEKQNRVASEVTSTGKPALGGPFTLVDMHGRPVTDKDFHGSFVMLYFGFCHCPDICPSELVKVGAITEKLVAKLGGGVIKPVFVSVDPDRDSLAQLRHYSQDFH 138
            SRGPLTWGAVGLLG+V +L VGYYR+KW+EKQNR ASEVTSTGKPALGGPFTLVDMHG+PVT+KD+HGSFV+LYFGFCHCPDICPSELVKVGAI  KL  KLG GV+KPVFVSVDPDRDSLAQL+HY+QDFH
Sbjct:  140 SRGPLTWGAVGLLGIVASLAVGYYRMKWEEKQNRTASEVTSTGKPALGGPFTLVDMHGKPVTEKDYHGSFVLLYFGFCHCPDICPSELVKVGAIATKLEDKLGAGVVKPVFVSVDPDRDSLAQLKHYAQDFH 271          
BLAST of mRNA_H-elongata_contig56099.13048.1 vs. uniprot
Match: A0A4D9DEH7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DEH7_9STRA)

HSP 1 Score: 171 bits (433), Expect = 2.350e-51
Identity = 77/131 (58.78%), Postives = 99/131 (75.57%), Query Frame = 0
Query:   10 PLTWGAVGLLGVVGTLIVGYYRVKWDEKQNRVASEVTSTGKPALGGPFTLVDMHGRPVTDKDFHGSFVMLYFGFCHCPDICPSELVKVGAITEKLVAKLGGGVIKPVFVSVDPDRDSLAQLRHYSQDFHPR 140
            P+TW  + ++ V GT +  +Y+V+ +  Q +   +VTS GKPALGGP+TLVD  GRPVTD DF G F++LYFGF HCPDICPSELVKVG I + L  +    V++PVF+SVDPDRD++ QLRHY+QDFHPR
Sbjct:    2 PVTWIGLAIMAVTGTGLAYFYQVEKERMQQQALGKVTSYGKPALGGPWTLVDFTGRPVTDADFRGEFLLLYFGFTHCPDICPSELVKVGKILDLLDREPNLPVVRPVFISVDPDRDNVGQLRHYAQDFHPR 132          
BLAST of mRNA_H-elongata_contig56099.13048.1 vs. uniprot
Match: A0A835ZB06_9STRA (SCO1 family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB06_9STRA)

HSP 1 Score: 169 bits (429), Expect = 4.720e-50
Identity = 78/133 (58.65%), Postives = 102/133 (76.69%), Query Frame = 0
Query:    8 RGPLTWGAVGLLGVVGTLIVGYYRVKWDEKQNRVASEVTSTGKPALGGPFTLVDMHGRPVTDKDFHGSFVMLYFGFCHCPDICPSELVKVGAITEKLVAKLGGGV-IKPVFVSVDPDRDSLAQLRHYSQDFHP 139
            R P+TW +VGL+G+VG  +  YY  + +++  +  S+VTS GKP LGGP+TLVDMHG P TDKD+ GS+ +LYFGF HCPDICP+ELVK+G I ++   +L   V +KPVF+SVDPDRDSL QLR Y++DFHP
Sbjct:   55 RTPVTWASVGLVGIVGAGLAWYYTNEKEKRMTQTVSQVTSIGKPNLGGPWTLVDMHGVPKTDKDYLGSYTLLYFGFAHCPDICPAELVKLGHILQEASKQLKRPVPVKPVFISVDPDRDSLRQLRFYAKDFHP 187          
BLAST of mRNA_H-elongata_contig56099.13048.1 vs. uniprot
Match: W7U1H0_9STRA (Sco1 family protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U1H0_9STRA)

HSP 1 Score: 160 bits (405), Expect = 3.430e-47
Identity = 73/130 (56.15%), Postives = 95/130 (73.08%), Query Frame = 0
Query:   10 PLTWGAVGLLGVVGTLIVGYYRVKWDEKQNRVASEVTSTGKPALGGPFTLVDMHGRPVTDKDFHGSFVMLYFGFCHCPDICPSELVKVGAITEKLVAKLGGGVIKPVFVSVDPDRDSLAQLRHYSQDFHP 139
            P+TW  + ++ V GT +  +Y+V+ +  Q +   +VTS GKPALGGP+TLVD  GRPVTD DF G F++LYFGF HCPDICPSELVKVG I + L  +    V++PVF+SVDPDRD++ QLRHY+Q   P
Sbjct:   66 PVTWVGLAIMAVTGTGLAYFYQVEKERMQQQALGKVTSYGKPALGGPWTLVDFTGRPVTDADFRGEFLLLYFGFTHCPDICPSELVKVGKILDSLDREPNLPVVRPVFISVDPDRDNVGQLRHYAQGALP 195          
BLAST of mRNA_H-elongata_contig56099.13048.1 vs. uniprot
Match: A0A7S1VVL7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VVL7_9STRA)

HSP 1 Score: 153 bits (386), Expect = 9.780e-44
Identity = 69/142 (48.59%), Postives = 100/142 (70.42%), Query Frame = 0
Query:    7 SRGPLTWGAVGLLGVVGTLIVGYYRVKWDEKQNRVASEVTSTGKPALGGPFTLVDMHGRPVTDKDFHGSFVMLYFGFCHCPDICPSELVKVGAITE-------KLVAKLGGGVIKPVFVSVDPDRDSLAQLRHYSQDFHPRY 141
            SRGP++W A+GL+ V     VGYY+++ + +      ++ STGKPA+GGP++LVD+ G+ VT+K+F G +++LYFGF  CPDICPSE++KVG + +       KL AK     ++P+FVSVDP RDSL  L+ Y++DFHP Y
Sbjct:   85 SRGPVSWSALGLVTVAAATAVGYYQIERERRLENAMGKIVSTGKPAIGGPWSLVDLEGKLVTNKNFEGKWLLLYFGFARCPDICPSEMLKVGKVMDALKEQHPKLAAK-----VQPIFVSVDPARDSLLALKEYAKDFHPSY 221          
BLAST of mRNA_H-elongata_contig56099.13048.1 vs. uniprot
Match: A0A662XZY4_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XZY4_9STRA)

HSP 1 Score: 150 bits (380), Expect = 3.710e-43
Identity = 72/134 (53.73%), Postives = 94/134 (70.15%), Query Frame = 0
Query:    9 GPLTWGAVGLLGVVGTLIVGYYRVKWDEKQNRVASEVTSTGKPALGGPFTLVDMH-GRPVTDKDFHGSFVMLYFGFCHCPDICPSELVKVGAITEKLVAKLGGGVIKPVFVSVDPDRDSLAQLRHYSQDFHPRY 141
            GP+TW  + L GVVG+  V YY  + D  Q +  S+VTS GKP LGGP+TLVD   GR VTD  FHG   +LYFGF HCPDICP+ELV++G + +KL A+    V+ P+FV+VDP RD++AQ++ Y  DFHP +
Sbjct:   21 GPITWSGLALAGVVGSGAVYYYYSEKDRLQTQTTSKVTSVGKPLLGGPWTLVDCDTGRAVTDASFHGKHTLLYFGFTHCPDICPNELVRIGEVLDKLQAENAPEVV-PLFVTVDPRRDTIAQMQIYKADFHPAF 153          
BLAST of mRNA_H-elongata_contig56099.13048.1 vs. uniprot
Match: A0A7S1C0X5_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1C0X5_9STRA)

HSP 1 Score: 150 bits (379), Expect = 1.170e-42
Identity = 69/136 (50.74%), Postives = 94/136 (69.12%), Query Frame = 0
Query:    8 RGPLTWGAVGLLGVVGTLIVGYYRVKWDEKQNRVASEVTSTGKPALGGPFTLVDMHGRPVTDKDFHGSFVMLYFGFCHCPDICPSELVKVGAITEKLVAKLGGGV---IKPVFVSVDPDRDSLAQLRHYSQDFHPR 140
            RGP+TW  + L  V     VGYY+++ ++K  +   EVT+TGKPA+GGP+TLVD  GR V +  + G + +LYFGF HCPDICPSELVKV  + ++L A+ G      + P+FVSVDP RDS+ +L+ Y +DFHPR
Sbjct:   46 RGPVTWIGLTLTAVASFSAVGYYKIEQEKKAEKKMREVTTTGKPAVGGPWTLVDRSGRLVNETSYAGKYTLLYFGFAHCPDICPSELVKVAQVMDRLEAECGREAADRVVPLFVSVDPARDSIQKLKEYGRDFHPR 181          
BLAST of mRNA_H-elongata_contig56099.13048.1 vs. uniprot
Match: A0A7S2KWS8_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KWS8_9STRA)

HSP 1 Score: 149 bits (377), Expect = 8.900e-42
Identity = 68/139 (48.92%), Postives = 96/139 (69.06%), Query Frame = 0
Query:    7 SRGPLTWGAVGLLGVVGTLIVGYYRVKWDEKQNRVASEVTSTGKPALGGPFTLVDMHGRPVTDKDFHGSFVMLYFGFCHCPDICPSELVKVGAIT---EKLVAKLGGGVIKPVFVSVDPDRDSLAQLRHYSQDFHPRYA 142
            +RGP+TW A+GL+ +     V YY+++ + +      ++ STGKPA+GGP++LVD+ G  VT++ F G + +LYFGF  CPDICPSE+VK+G +    EK   KL G  I+P+FVS+DP RDSL  LR Y++DFHP Y 
Sbjct:   94 TRGPVTWPALGLVAIAAASAVSYYKIERERRLENAMGKIVSTGKPAIGGPWSLVDLDGNLVTNESFKGKWTLLYFGFARCPDICPSEMVKIGKVMDTLEKEHPKLRGQ-IQPIFVSIDPARDSLKALRDYAKDFHPSYV 231          
BLAST of mRNA_H-elongata_contig56099.13048.1 vs. uniprot
Match: A0A3R7GYF8_9STRA (Uncharacterized protein n=5 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GYF8_9STRA)

HSP 1 Score: 147 bits (372), Expect = 9.590e-42
Identity = 70/134 (52.24%), Postives = 95/134 (70.90%), Query Frame = 0
Query:    9 GPLTWGAVGLLGVVGTLIVGYYRVKWDEKQNRVASEVTSTGKPALGGPFTLVDMHG-RPVTDKDFHGSFVMLYFGFCHCPDICPSELVKVGAITEKLVAKLGGGVIKPVFVSVDPDRDSLAQLRHYSQDFHPRY 141
            GP++W  + L GVVG  +V YY  + D  Q +  S+VTS GKP LGGP+TLVD    RPVTD  F G + +LYFGF HCPDICP+ELV++G + +KL ++    V+ P+FVSVDP RD++AQ++ Y  DFHP++
Sbjct:   36 GPVSWSGLALAGVVGGSVVYYYYSEKDRLQTQTTSKVTSVGKPLLGGPWTLVDCDTKRPVTDASFRGQYSLLYFGFTHCPDICPNELVRIGDVLDKLESENLPEVV-PLFVSVDPKRDTIAQMQAYKADFHPKF 168          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56099.13048.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIM6_ECTSI1.130e-8285.29SCO1 homolog, cytochrome c oxidase copper chaperon... [more]
A0A6H5KBL1_9PHAE1.970e-8085.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4D9DEH7_9STRA2.350e-5158.78Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A835ZB06_9STRA4.720e-5058.65SCO1 family protein n=1 Tax=Tribonema minus TaxID=... [more]
W7U1H0_9STRA3.430e-4756.15Sco1 family protein n=1 Tax=Nannochloropsis gadita... [more]
A0A7S1VVL7_9STRA9.780e-4448.59Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A662XZY4_9STRA3.710e-4353.73Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A7S1C0X5_9STRA1.170e-4250.74Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S2KWS8_9STRA8.900e-4248.92Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A3R7GYF8_9STRA9.590e-4252.24Uncharacterized protein n=5 Tax=Phytophthora kerno... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.30.10coord: 35..142
e-value: 9.8E-32
score: 111.9
NoneNo IPR availablePANTHERPTHR12151:SF5AT19154Pcoord: 6..140
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..30
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 31..142
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
NoneNo IPR availableTMHMMTMhelixcoord: 10..32
IPR003782Copper chaperone SCO1/SenCPFAMPF02630SCO1-SenCcoord: 54..141
e-value: 2.6E-26
score: 92.1
IPR003782Copper chaperone SCO1/SenCPANTHERPTHR12151SCO1/SENCcoord: 6..140
IPR036249Thioredoxin-like superfamilySUPERFAMILY52833Thioredoxin-likecoord: 51..141

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56099contigH-elongata_contig56099:1923..2351 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56099.13048.1mRNA_H-elongata_contig56099.13048.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig56099 1923..2351 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig56099.13048.1 ID=prot_H-elongata_contig56099.13048.1|Name=mRNA_H-elongata_contig56099.13048.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=143bp
SGGDGRSRGPLTWGAVGLLGVVGTLIVGYYRVKWDEKQNRVASEVTSTGK
PALGGPFTLVDMHGRPVTDKDFHGSFVMLYFGFCHCPDICPSELVKVGAI
TEKLVAKLGGGVIKPVFVSVDPDRDSLAQLRHYSQDFHPRYA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003782SCO1/SenC
IPR036249Thioredoxin-like_sf